Wall clock time and date at job start Fri Apr 10 2020 17:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39678 * 126.06588 * 2 1 4 4 C 1.38405 * 105.36141 * 180.09316 * 3 2 1 5 5 C 1.47157 * 126.88938 * 179.91532 * 4 3 2 6 6 O 1.21631 * 120.00346 * 185.00403 * 5 4 3 7 7 N 1.34777 * 119.99581 * 5.00835 * 5 4 3 8 8 C 1.46507 * 119.99695 * 185.11217 * 7 5 4 9 9 C 1.53008 * 109.46780 * 180.02562 * 8 7 5 10 10 H 1.08994 * 110.91489 * 51.09672 * 9 8 7 11 11 C 1.54905 * 111.00154 * 287.19594 * 9 8 7 12 12 N 1.47428 * 104.83199 * 204.91923 * 11 9 8 13 13 C 1.36936 * 125.65103 * 204.16539 * 12 11 9 14 14 H 1.08000 * 119.99473 * 354.95325 * 13 12 11 15 15 C 1.38808 * 120.00355 * 174.94968 * 13 12 11 16 16 N 1.31620 * 119.99603 * 5.41797 * 15 13 12 17 17 Si 1.86794 * 120.00167 * 185.41361 * 15 13 12 18 18 H 1.48505 * 109.47030 * 95.00465 * 17 15 13 19 19 H 1.48504 * 109.47129 * 214.99589 * 17 15 13 20 20 H 1.48491 * 109.47361 * 335.00001 * 17 15 13 21 21 C 1.47020 * 108.70238 * 24.12880 * 12 11 9 22 22 C 1.54321 * 107.26951 * 358.94034 * 21 12 11 23 23 H 1.09002 * 110.72054 * 96.35098 * 22 21 12 24 24 C 1.53001 * 110.72071 * 219.44391 * 22 21 12 25 25 N 1.36604 * 106.22879 * 359.65844 * 4 3 2 26 26 C 1.46497 * 125.18939 * 180.24894 * 25 4 3 27 27 N 1.28447 * 109.61746 * 0.22069 * 25 4 3 28 28 H 1.08996 * 109.47054 * 270.27537 * 1 2 3 29 29 H 1.09001 * 109.47530 * 30.27975 * 1 2 3 30 30 H 1.09002 * 109.46882 * 150.28254 * 1 2 3 31 31 H 1.08005 * 127.32482 * 359.97438 * 3 2 1 32 32 H 0.97001 * 120.00135 * 5.11319 * 7 5 4 33 33 H 1.08995 * 109.46892 * 60.00509 * 8 7 5 34 34 H 1.08998 * 109.47404 * 299.99746 * 8 7 5 35 35 H 1.09000 * 110.36826 * 86.08016 * 11 9 8 36 36 H 1.08997 * 110.37019 * 323.75563 * 11 9 8 37 37 H 0.97002 * 120.00086 * 179.97438 * 16 15 13 38 38 H 1.09003 * 109.88231 * 239.52794 * 21 12 11 39 39 H 1.09000 * 110.01690 * 118.42887 * 21 12 11 40 40 H 1.09003 * 109.47362 * 58.54779 * 24 22 21 41 41 H 1.09000 * 109.47118 * 178.54722 * 24 22 21 42 42 H 1.09007 * 109.47416 * 298.54589 * 24 22 21 43 43 H 1.08996 * 109.47793 * 84.34037 * 26 25 4 44 44 H 1.09012 * 109.46909 * 204.33953 * 26 25 4 45 45 H 1.09004 * 109.47317 * 324.33414 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3293 1.1291 0.0000 4 6 3.6239 0.6397 -0.0022 5 6 4.8663 1.4284 -0.0048 6 8 5.9420 0.8684 -0.0984 7 7 4.8122 2.7712 0.0966 8 6 6.0386 3.5645 -0.0184 9 6 5.7015 5.0493 0.1330 10 1 5.1074 5.2240 1.0299 11 6 4.9763 5.5852 -1.1266 12 7 5.2565 7.0325 -1.1363 13 6 4.4903 7.9897 -1.7461 14 1 3.6402 7.6996 -2.3457 15 6 4.8062 9.3328 -1.5936 16 7 5.9014 9.6825 -0.9528 17 14 3.6772 10.6437 -2.2979 18 1 2.7410 11.1092 -1.2433 19 1 4.4894 11.7897 -2.7797 20 1 2.9037 10.0744 -3.4304 21 6 6.4943 7.2781 -0.3820 22 6 6.9898 5.9138 0.1421 23 1 7.7433 5.4950 -0.5250 24 6 7.5419 6.0477 1.5627 25 7 3.5173 -0.7221 0.0045 26 6 4.6451 -1.6572 0.0101 27 7 2.2775 -1.0576 0.0056 28 1 -0.3633 0.0049 1.0276 29 1 -0.3634 0.8875 -0.5182 30 1 -0.3633 -0.8925 -0.5095 31 1 2.0205 2.1641 -0.0004 32 1 3.9613 3.2125 0.2458 33 1 6.4925 3.3922 -0.9942 34 1 6.7371 3.2692 0.7646 35 1 3.9036 5.4069 -1.0513 36 1 5.3778 5.1151 -2.0243 37 1 6.1224 10.6210 -0.8465 38 1 6.2918 7.9456 0.4557 39 1 7.2473 7.7203 -1.0344 40 1 6.7648 6.4395 2.2191 41 1 7.8617 5.0695 1.9219 42 1 8.3924 6.7295 1.5594 43 1 4.9886 -1.8061 1.0338 44 1 4.3274 -2.6120 -0.4090 45 1 5.4583 -1.2494 -0.5903 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092489841.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:56:11 Heat of formation + Delta-G solvation = 56.877583 kcal Electronic energy + Delta-G solvation = -25103.364778 eV Core-core repulsion = 21544.004436 eV Total energy + Delta-G solvation = -3559.360342 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.70802 -39.55980 -37.99630 -34.98797 -34.08025 -33.01680 -31.36990 -30.75378 -29.87085 -29.12120 -26.07398 -25.72250 -25.24188 -23.55305 -22.47564 -21.10166 -20.20586 -19.80102 -19.11166 -17.85050 -16.81243 -16.54553 -16.26731 -15.80333 -15.18282 -14.85069 -14.40823 -14.10766 -13.88816 -13.70518 -13.68667 -13.39010 -13.23997 -12.95987 -12.65749 -12.56334 -12.51338 -12.43765 -11.88161 -11.72148 -11.41576 -11.25257 -10.87532 -10.82434 -10.81045 -10.34348 -10.11511 -10.01553 -9.95588 -9.75375 -9.60435 -9.37593 -9.05381 -8.99238 -8.60388 -6.84776 -5.73889 -3.06899 1.10318 2.20041 2.35878 3.08453 3.14496 3.38617 3.44009 3.46017 4.25547 4.41893 4.47902 4.80946 4.93837 4.99767 5.05539 5.15219 5.19352 5.28556 5.32297 5.40864 5.44302 5.50725 5.52573 5.63552 5.71157 5.77294 5.82328 5.98491 6.04466 6.15585 6.24142 6.29117 6.34979 6.45679 6.54386 6.55062 6.59678 6.72044 6.90572 7.35338 7.54281 7.63042 7.82068 7.87110 8.02854 8.24196 9.20044 9.80516 10.46761 11.37857 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.016834 B = 0.003152 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.907691 B = 8882.319515 C =10224.290886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.022 3.978 3 C -0.185 4.185 4 C -0.034 4.034 5 C 0.589 3.411 6 O -0.546 6.546 7 N -0.706 5.706 8 C 0.134 3.866 9 C -0.113 4.113 10 H 0.082 0.918 11 C 0.141 3.859 12 N -0.606 5.606 13 C -0.230 4.230 14 H 0.078 0.922 15 C -0.007 4.007 16 N -0.920 5.920 17 Si 0.910 3.090 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.281 1.281 21 C 0.182 3.818 22 C -0.110 4.110 23 H 0.068 0.932 24 C -0.134 4.134 25 N -0.259 5.259 26 C 0.087 3.913 27 N -0.280 5.280 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.163 0.837 32 H 0.406 0.594 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.037 0.963 36 H 0.019 0.981 37 H 0.252 0.748 38 H 0.052 0.948 39 H 0.039 0.961 40 H 0.054 0.946 41 H 0.044 0.956 42 H 0.054 0.946 43 H 0.083 0.917 44 H 0.093 0.907 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.417 -18.780 4.755 19.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.134 4.134 3 C -0.214 4.214 4 C -0.163 4.163 5 C 0.374 3.626 6 O -0.425 6.425 7 N -0.357 5.357 8 C 0.011 3.989 9 C -0.133 4.133 10 H 0.100 0.900 11 C 0.015 3.985 12 N -0.332 5.332 13 C -0.358 4.358 14 H 0.095 0.905 15 C -0.203 4.203 16 N -0.567 5.567 17 Si 0.741 3.259 18 H -0.216 1.216 19 H -0.218 1.218 20 H -0.206 1.206 21 C 0.058 3.942 22 C -0.130 4.130 23 H 0.086 0.914 24 C -0.192 4.192 25 N -0.046 5.046 26 C -0.053 4.053 27 N -0.114 5.114 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.180 0.820 32 H 0.241 0.759 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.055 0.945 36 H 0.036 0.964 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.057 0.943 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.073 0.927 43 H 0.102 0.898 44 H 0.112 0.888 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.509 -20.181 4.639 21.002 hybrid contribution -0.850 1.829 -0.311 2.040 sum -4.359 -18.352 4.328 19.353 Atomic orbital electron populations 1.20093 0.86345 1.03283 1.02788 1.22013 0.97160 0.88773 1.05500 1.22184 0.90270 1.00489 1.08481 1.21442 0.95821 0.85319 1.13675 1.16891 0.86425 0.82351 0.76900 1.90775 1.29841 1.70875 1.50965 1.45774 1.12409 1.05222 1.72250 1.21494 0.85376 0.89829 1.02202 1.22697 0.98890 0.91321 1.00414 0.89971 1.21598 0.96821 0.86541 0.93552 1.44455 1.26057 1.00310 1.62386 1.19057 1.07108 0.85661 1.23991 0.90461 1.24817 0.97869 0.97008 1.00636 1.69970 1.24281 1.15692 1.46762 0.86123 0.79852 0.81611 0.78339 1.21615 1.21770 1.20638 1.21233 0.87773 0.89793 0.95438 1.22431 0.95194 0.98600 0.96727 0.91399 1.21698 1.00930 1.00396 0.96183 1.45519 1.05088 1.04352 1.49662 1.22320 0.85672 0.92436 1.04840 1.73121 0.89479 1.27939 1.20894 0.90826 0.90345 0.91078 0.81994 0.75921 0.91066 0.91208 0.94490 0.96356 0.93758 0.92979 0.94328 0.92738 0.93684 0.92663 0.89833 0.88849 0.87278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 10.45 36.00 0.38 -0.13 16 2 C 0.02 0.24 7.22 -82.47 -0.60 -0.35 16 3 C -0.19 -2.05 10.43 -38.98 -0.41 -2.46 16 4 C -0.03 -0.43 6.96 -82.06 -0.57 -1.00 16 5 C 0.59 8.00 7.79 -12.64 -0.10 7.90 16 6 O -0.55 -8.58 14.80 5.25 0.08 -8.50 16 7 N -0.71 -8.75 5.48 -61.46 -0.34 -9.09 16 8 C 0.13 1.83 5.14 -4.03 -0.02 1.81 16 9 C -0.11 -1.79 2.50 -88.47 -0.22 -2.01 16 10 H 0.08 1.28 8.04 -51.93 -0.42 0.86 16 11 C 0.14 2.73 6.65 -2.53 -0.02 2.71 16 12 N -0.61 -14.97 3.39 -170.08 -0.58 -15.55 16 13 C -0.23 -6.28 10.27 -15.06 -0.15 -6.43 16 14 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 15 C -0.01 -0.19 5.48 -17.43 -0.10 -0.29 16 16 N -0.92 -26.59 10.34 55.49 0.57 -26.02 16 17 Si 0.91 21.77 29.56 -169.99 -5.02 16.75 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 C 0.18 4.26 4.98 -3.07 -0.02 4.24 16 22 C -0.11 -1.91 3.01 -88.79 -0.27 -2.18 16 23 H 0.07 1.15 8.04 -51.93 -0.42 0.73 16 24 C -0.13 -2.02 9.13 37.16 0.34 -1.68 16 25 N -0.26 -3.19 3.75 -63.88 -0.24 -3.43 16 26 C 0.09 0.81 10.71 59.85 0.64 1.45 16 27 N -0.28 -3.53 11.90 33.64 0.40 -3.13 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.16 1.40 7.62 -52.48 -0.40 1.00 16 32 H 0.41 4.35 7.55 -40.82 -0.31 4.04 16 33 H 0.07 1.04 7.96 -51.93 -0.41 0.62 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.02 0.37 7.91 -51.93 -0.41 -0.04 16 37 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 38 H 0.05 1.35 6.93 -51.93 -0.36 0.99 16 39 H 0.04 1.01 7.64 -51.93 -0.40 0.62 16 40 H 0.05 0.84 8.13 -51.93 -0.42 0.41 16 41 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.05 0.82 8.14 -51.92 -0.42 0.40 16 43 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.09 0.67 8.14 -51.92 -0.42 0.24 16 45 H 0.11 1.08 6.54 -51.93 -0.34 0.74 16 LS Contribution 367.05 15.07 5.53 5.53 Total: -1.00 -32.81 367.05 -7.94 -40.75 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -7.24 Total: 1.11 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -1.11 Total: 1.57 kcal Atomic # 7 Polarization: -57.03 SS G_CDS: -0.18 Total: -57.21 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.08 Total: -8.50 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.81 -7.94 -40.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092489841.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.628 kcal (2) G-P(sol) polarization free energy of solvation -32.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds