Wall clock time and date at job start Fri Apr 10 2020 17:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39678 * 126.06588 * 2 1 4 4 C 1.38405 * 105.36141 * 180.09316 * 3 2 1 5 5 C 1.47157 * 126.88938 * 179.91532 * 4 3 2 6 6 O 1.21631 * 120.00346 * 185.00403 * 5 4 3 7 7 N 1.34777 * 119.99581 * 5.00835 * 5 4 3 8 8 C 1.46507 * 119.99695 * 185.11217 * 7 5 4 9 9 C 1.53008 * 109.46780 * 180.02562 * 8 7 5 10 10 H 1.08994 * 110.91489 * 51.09672 * 9 8 7 11 11 C 1.54905 * 111.00154 * 287.19594 * 9 8 7 12 12 N 1.47428 * 104.83199 * 204.91923 * 11 9 8 13 13 C 1.36936 * 125.65103 * 204.16539 * 12 11 9 14 14 H 1.08000 * 119.99473 * 354.95325 * 13 12 11 15 15 C 1.38808 * 120.00355 * 174.94968 * 13 12 11 16 16 N 1.31620 * 119.99603 * 5.41797 * 15 13 12 17 17 Si 1.86794 * 120.00167 * 185.41361 * 15 13 12 18 18 H 1.48505 * 109.47030 * 95.00465 * 17 15 13 19 19 H 1.48504 * 109.47129 * 214.99589 * 17 15 13 20 20 H 1.48491 * 109.47361 * 335.00001 * 17 15 13 21 21 C 1.47020 * 108.70238 * 24.12880 * 12 11 9 22 22 C 1.54321 * 107.26951 * 358.94034 * 21 12 11 23 23 H 1.09002 * 110.72054 * 96.35098 * 22 21 12 24 24 C 1.53001 * 110.72071 * 219.44391 * 22 21 12 25 25 N 1.36604 * 106.22879 * 359.65844 * 4 3 2 26 26 C 1.46497 * 125.18939 * 180.24894 * 25 4 3 27 27 N 1.28447 * 109.61746 * 0.22069 * 25 4 3 28 28 H 1.08996 * 109.47054 * 270.27537 * 1 2 3 29 29 H 1.09001 * 109.47530 * 30.27975 * 1 2 3 30 30 H 1.09002 * 109.46882 * 150.28254 * 1 2 3 31 31 H 1.08005 * 127.32482 * 359.97438 * 3 2 1 32 32 H 0.97001 * 120.00135 * 5.11319 * 7 5 4 33 33 H 1.08995 * 109.46892 * 60.00509 * 8 7 5 34 34 H 1.08998 * 109.47404 * 299.99746 * 8 7 5 35 35 H 1.09000 * 110.36826 * 86.08016 * 11 9 8 36 36 H 1.08997 * 110.37019 * 323.75563 * 11 9 8 37 37 H 0.97002 * 120.00086 * 179.97438 * 16 15 13 38 38 H 1.09003 * 109.88231 * 239.52794 * 21 12 11 39 39 H 1.09000 * 110.01690 * 118.42887 * 21 12 11 40 40 H 1.09003 * 109.47362 * 58.54779 * 24 22 21 41 41 H 1.09000 * 109.47118 * 178.54722 * 24 22 21 42 42 H 1.09007 * 109.47416 * 298.54589 * 24 22 21 43 43 H 1.08996 * 109.47793 * 84.34037 * 26 25 4 44 44 H 1.09012 * 109.46909 * 204.33953 * 26 25 4 45 45 H 1.09004 * 109.47317 * 324.33414 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3293 1.1291 0.0000 4 6 3.6239 0.6397 -0.0022 5 6 4.8663 1.4284 -0.0048 6 8 5.9420 0.8684 -0.0984 7 7 4.8122 2.7712 0.0966 8 6 6.0386 3.5645 -0.0184 9 6 5.7015 5.0493 0.1330 10 1 5.1074 5.2240 1.0299 11 6 4.9763 5.5852 -1.1266 12 7 5.2565 7.0325 -1.1363 13 6 4.4903 7.9897 -1.7461 14 1 3.6402 7.6996 -2.3457 15 6 4.8062 9.3328 -1.5936 16 7 5.9014 9.6825 -0.9528 17 14 3.6772 10.6437 -2.2979 18 1 2.7410 11.1092 -1.2433 19 1 4.4894 11.7897 -2.7797 20 1 2.9037 10.0744 -3.4304 21 6 6.4943 7.2781 -0.3820 22 6 6.9898 5.9138 0.1421 23 1 7.7433 5.4950 -0.5250 24 6 7.5419 6.0477 1.5627 25 7 3.5173 -0.7221 0.0045 26 6 4.6451 -1.6572 0.0101 27 7 2.2775 -1.0576 0.0056 28 1 -0.3633 0.0049 1.0276 29 1 -0.3634 0.8875 -0.5182 30 1 -0.3633 -0.8925 -0.5095 31 1 2.0205 2.1641 -0.0004 32 1 3.9613 3.2125 0.2458 33 1 6.4925 3.3922 -0.9942 34 1 6.7371 3.2692 0.7646 35 1 3.9036 5.4069 -1.0513 36 1 5.3778 5.1151 -2.0243 37 1 6.1224 10.6210 -0.8465 38 1 6.2918 7.9456 0.4557 39 1 7.2473 7.7203 -1.0344 40 1 6.7648 6.4395 2.2191 41 1 7.8617 5.0695 1.9219 42 1 8.3924 6.7295 1.5594 43 1 4.9886 -1.8061 1.0338 44 1 4.3274 -2.6120 -0.4090 45 1 5.4583 -1.2494 -0.5903 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092489841.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:56:10 Heat of formation + Delta-G solvation = 35.325596 kcal Electronic energy + Delta-G solvation = -25104.299343 eV Core-core repulsion = 21544.004436 eV Total energy + Delta-G solvation = -3560.294907 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.56295 -40.68606 -39.48341 -36.21477 -35.02997 -34.61349 -32.53398 -32.36623 -30.56472 -30.45435 -27.83669 -26.76456 -26.40443 -24.91299 -23.72153 -22.11323 -21.59549 -21.14554 -20.32301 -18.94886 -18.58077 -17.41818 -17.31501 -17.07964 -16.49523 -16.21756 -15.81091 -15.57412 -15.12758 -14.72911 -14.65224 -14.41410 -14.32944 -14.14691 -14.10528 -13.41404 -13.29782 -13.27672 -13.22591 -13.11037 -13.07138 -12.84561 -12.67472 -12.38900 -11.91606 -11.83122 -11.70900 -11.56627 -11.46216 -11.34957 -11.07433 -10.66693 -10.36582 -10.01125 -9.83052 -8.86101 -7.83230 -5.17857 0.17704 1.36789 1.47814 1.48913 1.52788 1.57864 2.10157 2.18018 2.51310 3.34562 3.47217 3.51553 3.62875 3.81020 3.94768 3.97392 4.05622 4.27910 4.31720 4.38544 4.41558 4.52309 4.61095 4.63068 4.66142 4.76612 4.82207 4.87627 4.91059 4.99528 5.02751 5.10561 5.14259 5.16321 5.31029 5.38459 5.47851 5.51543 5.56151 5.73456 5.75231 5.85366 6.23193 6.36682 6.97362 7.06849 7.13135 7.81144 8.45676 9.27186 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.016834 B = 0.003152 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.907691 B = 8882.319515 C =10224.290886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.012 3.988 3 C -0.181 4.181 4 C -0.054 4.054 5 C 0.592 3.408 6 O -0.571 6.571 7 N -0.698 5.698 8 C 0.147 3.853 9 C -0.090 4.090 10 H 0.091 0.909 11 C 0.136 3.864 12 N -0.629 5.629 13 C -0.241 4.241 14 H 0.083 0.917 15 C -0.066 4.066 16 N -0.950 5.950 17 Si 0.975 3.025 18 H -0.286 1.286 19 H -0.298 1.298 20 H -0.268 1.268 21 C 0.190 3.810 22 C -0.100 4.100 23 H 0.076 0.924 24 C -0.128 4.128 25 N -0.268 5.268 26 C 0.084 3.916 27 N -0.299 5.299 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.073 0.927 31 H 0.185 0.815 32 H 0.415 0.585 33 H 0.065 0.935 34 H 0.081 0.919 35 H 0.051 0.949 36 H 0.018 0.982 37 H 0.246 0.754 38 H 0.019 0.981 39 H -0.005 1.005 40 H 0.049 0.951 41 H 0.076 0.924 42 H 0.051 0.949 43 H 0.092 0.908 44 H 0.111 0.889 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.827 -20.169 5.222 21.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.143 4.143 3 C -0.210 4.210 4 C -0.183 4.183 5 C 0.378 3.622 6 O -0.451 6.451 7 N -0.349 5.349 8 C 0.023 3.977 9 C -0.110 4.110 10 H 0.109 0.891 11 C 0.011 3.989 12 N -0.355 5.355 13 C -0.370 4.370 14 H 0.101 0.899 15 C -0.259 4.259 16 N -0.599 5.599 17 Si 0.804 3.196 18 H -0.213 1.213 19 H -0.225 1.225 20 H -0.192 1.192 21 C 0.065 3.935 22 C -0.120 4.120 23 H 0.094 0.906 24 C -0.185 4.185 25 N -0.056 5.056 26 C -0.056 4.056 27 N -0.133 5.133 28 H 0.104 0.896 29 H 0.112 0.888 30 H 0.092 0.908 31 H 0.203 0.797 32 H 0.252 0.748 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.069 0.931 36 H 0.036 0.964 37 H 0.055 0.945 38 H 0.037 0.963 39 H 0.014 0.986 40 H 0.068 0.932 41 H 0.095 0.905 42 H 0.070 0.930 43 H 0.111 0.889 44 H 0.130 0.870 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.947 -21.605 5.105 22.744 hybrid contribution -0.436 2.215 -0.500 2.313 sum -5.383 -19.390 4.604 20.643 Atomic orbital electron populations 1.20221 0.84105 1.04218 1.03838 1.22626 0.98660 0.88443 1.04616 1.22541 0.89590 1.01648 1.07250 1.21464 0.95931 0.85736 1.15141 1.16984 0.86427 0.82465 0.76323 1.90764 1.30800 1.71366 1.52199 1.45624 1.12476 1.04894 1.71909 1.21262 0.85960 0.88122 1.02322 1.22481 0.97307 0.92325 0.98894 0.89056 1.21793 0.98153 0.83751 0.95192 1.44787 1.26276 1.02303 1.62134 1.19466 1.07246 0.86609 1.23718 0.89909 1.25641 0.99335 0.99159 1.01743 1.70196 1.25904 1.15399 1.48371 0.85101 0.77925 0.78634 0.77941 1.21286 1.22483 1.19239 1.20997 0.86595 0.92565 0.93353 1.22302 0.96138 0.95284 0.98259 0.90588 1.21648 1.00556 1.02145 0.94199 1.45796 1.05482 1.04621 1.49653 1.22453 0.84922 0.92757 1.05435 1.73118 0.89823 1.28822 1.21560 0.89646 0.88752 0.90813 0.79740 0.74785 0.91708 0.90064 0.93108 0.96418 0.94516 0.96259 0.98640 0.93203 0.90489 0.92967 0.88908 0.87040 0.88186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.84 10.45 71.23 0.74 -0.10 16 2 C 0.01 0.25 7.22 43.05 0.31 0.56 16 3 C -0.18 -3.60 10.43 22.66 0.24 -3.36 16 4 C -0.05 -1.28 6.96 40.78 0.28 -1.00 16 5 C 0.59 15.01 7.79 86.59 0.67 15.68 16 6 O -0.57 -17.18 14.80 -4.13 -0.06 -17.24 16 7 N -0.70 -15.55 5.48 -466.61 -2.56 -18.11 16 8 C 0.15 3.62 5.14 86.38 0.44 4.07 16 9 C -0.09 -2.66 2.50 -9.40 -0.02 -2.69 16 10 H 0.09 2.59 8.04 -2.39 -0.02 2.57 16 11 C 0.14 5.08 6.65 86.85 0.58 5.66 16 12 N -0.63 -31.30 3.39 -692.00 -2.35 -33.65 16 13 C -0.24 -13.27 10.27 84.03 0.86 -12.41 16 14 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 15 C -0.07 -3.70 5.48 84.86 0.47 -3.24 16 16 N -0.95 -56.77 10.34 21.65 0.22 -56.55 16 17 Si 0.98 45.22 29.56 68.60 2.03 47.25 16 18 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 19 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 20 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 21 C 0.19 9.12 4.98 86.73 0.43 9.55 16 22 C -0.10 -3.39 3.01 -9.61 -0.03 -3.42 16 23 H 0.08 2.47 8.04 -2.39 -0.02 2.45 16 24 C -0.13 -3.62 9.13 71.98 0.66 -2.96 16 25 N -0.27 -6.27 3.75 -356.02 -1.33 -7.60 16 26 C 0.08 1.47 10.71 127.77 1.37 2.84 16 27 N -0.30 -7.10 11.90 -47.50 -0.57 -7.66 16 28 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.19 2.60 7.62 -2.91 -0.02 2.58 16 32 H 0.42 7.67 7.55 -92.71 -0.70 6.97 16 33 H 0.06 1.74 7.96 -2.39 -0.02 1.72 16 34 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.05 1.75 8.14 -2.39 -0.02 1.74 16 36 H 0.02 0.68 7.91 -2.39 -0.02 0.66 16 37 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 38 H 0.02 1.04 6.93 -2.39 -0.02 1.02 16 39 H 0.00 -0.26 7.64 -2.39 -0.02 -0.28 16 40 H 0.05 1.45 8.13 -2.39 -0.02 1.43 16 41 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 43 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.11 1.47 8.14 -2.38 -0.02 1.45 16 45 H 0.10 1.94 6.54 -2.39 -0.02 1.93 16 Total: -1.00 -72.44 367.05 2.67 -69.76 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 0.28 Total: 14.60 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: 7.01 Total: 9.19 kcal Atomic # 7 Polarization: -116.98 SS G_CDS: -6.58 Total: -123.57 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.06 Total: -17.24 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -72.44 2.67 -69.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092489841.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.088 kcal (2) G-P(sol) polarization free energy of solvation -72.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds