Wall clock time and date at job start Fri Apr 10 2020 17:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50700 * 109.46826 * 2 1 4 4 N 1.30450 * 125.99031 * 270.16638 * 3 2 1 5 5 N 1.39929 * 108.89507 * 180.27057 * 4 3 2 6 6 H 0.96999 * 125.75072 * 179.73890 * 5 4 3 7 7 C 1.34258 * 108.49762 * 359.73567 * 5 4 3 8 8 C 1.38048 * 107.41227 * 0.02562 * 7 5 4 9 9 C 1.47430 * 126.41163 * 179.97438 * 8 7 5 10 10 O 1.21607 * 119.99857 * 180.02562 * 9 8 7 11 11 N 1.34778 * 120.00461 * 0.03160 * 9 8 7 12 12 C 1.46490 * 120.00109 * 179.97438 * 11 9 8 13 13 C 1.53005 * 109.47021 * 179.97438 * 12 11 9 14 14 H 1.08993 * 110.91543 * 51.09254 * 13 12 11 15 15 C 1.54913 * 111.00185 * 287.19367 * 13 12 11 16 16 N 1.47425 * 104.83172 * 204.91813 * 15 13 12 17 17 C 1.36934 * 125.64598 * 204.16741 * 16 15 13 18 18 H 1.08001 * 120.00082 * 359.97438 * 17 16 15 19 19 C 1.38818 * 120.00056 * 179.97438 * 17 16 15 20 20 N 1.31621 * 119.99528 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00255 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47048 * 89.99818 * 21 19 17 23 23 H 1.48496 * 109.47094 * 209.99851 * 21 19 17 24 24 H 1.48503 * 109.47024 * 330.00057 * 21 19 17 25 25 C 1.47016 * 108.70144 * 24.12623 * 16 15 13 26 26 C 1.54322 * 107.27584 * 358.94568 * 25 16 15 27 27 H 1.08994 * 110.72057 * 96.34399 * 26 25 16 28 28 C 1.53006 * 110.71873 * 219.44305 * 26 25 16 29 29 H 1.08997 * 109.46596 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47104 * 299.99802 * 1 2 3 31 31 H 1.08998 * 109.46875 * 60.00052 * 1 2 3 32 32 H 1.09001 * 109.47104 * 240.00198 * 2 1 3 33 33 H 1.08998 * 109.46875 * 119.99947 * 2 1 3 34 34 H 1.07995 * 126.29520 * 179.97438 * 7 5 4 35 35 H 0.96998 * 119.99319 * 359.97438 * 11 9 8 36 36 H 1.09004 * 109.47511 * 59.99549 * 12 11 9 37 37 H 1.08997 * 109.47250 * 299.99462 * 12 11 9 38 38 H 1.08996 * 110.36871 * 86.07638 * 15 13 12 39 39 H 1.08998 * 110.36705 * 323.75587 * 15 13 12 40 40 H 0.97004 * 119.99644 * 179.97438 * 20 19 17 41 41 H 1.09005 * 109.88603 * 239.52323 * 25 16 15 42 42 H 1.09005 * 110.00815 * 118.43507 * 25 16 15 43 43 H 1.08994 * 109.47357 * 58.54604 * 28 26 25 44 44 H 1.08998 * 109.46865 * 178.54365 * 28 26 25 45 45 H 1.08994 * 109.46919 * 298.54190 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2849 2.1446 -1.0555 5 7 2.7377 3.4031 -0.6442 6 1 2.9984 4.1309 -1.2300 7 6 2.7504 3.4335 0.6980 8 6 2.3096 2.2034 1.1432 9 6 2.1613 1.7831 2.5486 10 8 1.7609 0.6650 2.8097 11 7 2.4694 2.6381 3.5438 12 6 2.3214 2.2206 4.9402 13 6 2.7354 3.3691 5.8625 14 1 2.2247 4.2920 5.5879 15 6 4.2725 3.5615 5.8541 16 7 4.5799 4.2003 7.1467 17 6 5.6799 4.9705 7.4146 18 1 6.4128 5.1525 6.6425 19 6 5.8531 5.5175 8.6787 20 7 4.9597 5.2962 9.6195 21 14 7.3540 6.5676 9.0444 22 1 7.0489 7.9894 8.7428 23 1 7.7153 6.4323 10.4783 24 1 8.4911 6.1161 8.2026 25 6 3.5093 3.8743 8.1001 26 6 2.4744 3.0101 7.3492 27 1 2.6532 1.9503 7.5300 28 6 1.0506 3.3942 7.7570 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.0511 4.2667 1.3158 35 1 2.7890 3.5299 3.3354 36 1 2.9568 1.3555 5.1301 37 1 1.2815 1.9568 5.1323 38 1 4.5692 4.2104 5.0302 39 1 4.7750 2.5972 5.7785 40 1 5.0809 5.6781 10.5029 41 1 3.0385 4.7905 8.4565 42 1 3.9174 3.3156 8.9424 43 1 0.8828 4.4492 7.5407 44 1 0.3369 2.7905 7.1965 45 1 0.9179 3.2165 8.8241 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092763695.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:56:23 Heat of formation + Delta-G solvation = 43.492912 kcal Electronic energy + Delta-G solvation = -25110.224903 eV Core-core repulsion = 21550.284158 eV Total energy + Delta-G solvation = -3559.940745 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.63503 -39.22320 -37.88117 -34.85104 -34.14830 -32.94921 -30.92525 -30.71858 -30.49943 -28.89149 -25.99500 -25.15681 -24.19284 -23.45231 -22.46005 -20.53377 -20.08947 -19.71466 -19.21166 -18.48907 -16.87322 -16.38361 -15.79618 -15.50624 -15.00919 -14.78302 -14.58563 -14.18918 -14.16102 -13.77271 -13.64175 -13.11052 -13.08552 -12.89462 -12.52414 -12.47556 -11.80857 -11.68349 -11.63367 -11.40283 -11.34141 -11.20456 -10.93227 -10.83288 -10.77810 -10.16889 -10.01091 -9.97123 -9.89530 -9.78374 -9.65589 -9.51316 -9.12324 -8.78549 -8.61420 -6.83956 -5.72489 -3.05945 1.29051 1.99052 2.43871 3.35188 3.37854 3.43078 3.45217 3.46371 4.24953 4.40567 4.47721 4.87952 5.02812 5.13839 5.19520 5.24060 5.29223 5.32607 5.41033 5.49710 5.53069 5.57504 5.78035 5.84555 5.90350 6.01812 6.03823 6.11597 6.13748 6.19808 6.29176 6.31236 6.49321 6.51180 6.57307 6.63457 6.77388 6.82419 6.95106 7.28535 7.55666 7.64235 7.65939 7.83258 8.25134 8.37010 9.20966 9.81400 10.47749 11.39016 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.020395 B = 0.002993 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.540765 B = 9352.355464 C =10366.450900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.049 4.049 3 C 0.138 3.862 4 N -0.301 5.301 5 N -0.462 5.462 6 H 0.444 0.556 7 C 0.105 3.895 8 C -0.284 4.284 9 C 0.590 3.410 10 O -0.543 6.543 11 N -0.723 5.723 12 C 0.135 3.865 13 C -0.112 4.112 14 H 0.079 0.921 15 C 0.142 3.858 16 N -0.607 5.607 17 C -0.229 4.229 18 H 0.077 0.923 19 C -0.008 4.008 20 N -0.921 5.921 21 Si 0.911 3.089 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.282 1.282 25 C 0.183 3.817 26 C -0.110 4.110 27 H 0.068 0.932 28 C -0.134 4.134 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.074 0.926 33 H 0.102 0.898 34 H 0.187 0.813 35 H 0.397 0.603 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.034 0.966 39 H 0.019 0.981 40 H 0.252 0.748 41 H 0.048 0.952 42 H 0.041 0.959 43 H 0.052 0.948 44 H 0.045 0.955 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.379 -4.428 -17.549 19.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.089 4.089 3 C -0.030 4.030 4 N -0.124 5.124 5 N -0.167 5.167 6 H 0.288 0.712 7 C -0.048 4.048 8 C -0.299 4.299 9 C 0.377 3.623 10 O -0.422 6.422 11 N -0.374 5.374 12 C 0.011 3.989 13 C -0.132 4.132 14 H 0.098 0.902 15 C 0.016 3.984 16 N -0.333 5.333 17 C -0.357 4.357 18 H 0.095 0.905 19 C -0.205 4.205 20 N -0.568 5.568 21 Si 0.742 3.258 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.059 3.941 26 C -0.130 4.130 27 H 0.086 0.914 28 C -0.192 4.192 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.121 0.879 34 H 0.204 0.796 35 H 0.231 0.769 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.052 0.948 39 H 0.037 0.963 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.059 0.941 43 H 0.072 0.928 44 H 0.064 0.936 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.552 -5.086 -18.413 20.930 hybrid contribution 1.252 1.702 0.790 2.256 sum -7.300 -3.385 -17.623 19.373 Atomic orbital electron populations 1.21614 0.93985 1.02078 1.01947 1.20134 0.96530 0.88030 1.04166 1.22487 0.94897 0.96935 0.88675 1.77157 1.21944 0.90755 1.22508 1.46101 1.51524 1.13542 1.05490 0.71184 1.23222 0.96934 0.98939 0.85695 1.20370 1.19213 0.95494 0.94829 1.17215 0.77041 0.84587 0.83409 1.90735 1.47023 1.20131 1.84264 1.45904 1.67977 1.17021 1.06495 1.21378 1.01272 0.97562 0.78637 1.22680 0.98373 0.97090 0.95082 0.90243 1.21585 0.91253 0.95727 0.89857 1.44461 1.23915 1.58299 1.06595 1.19041 0.97969 1.22564 0.96128 0.90549 1.24801 0.98651 1.00890 0.96124 1.69966 1.35087 1.48615 1.03165 0.86134 0.82186 0.80174 0.77349 1.21664 1.21669 1.20739 1.21212 0.86166 0.96081 0.90666 1.22434 0.96373 1.00415 0.93813 0.91373 1.21689 0.95616 1.00918 1.00931 0.91893 0.92110 0.93073 0.90694 0.87940 0.79597 0.76949 0.91343 0.91596 0.94772 0.96287 0.93764 0.93354 0.94081 0.92842 0.93637 0.92723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.90 37.16 0.37 -1.00 16 2 C -0.05 -0.54 5.97 -27.88 -0.17 -0.70 16 3 C 0.14 1.66 6.52 -82.02 -0.53 1.12 16 4 N -0.30 -3.43 12.63 33.90 0.43 -3.00 16 5 N -0.46 -3.70 7.29 30.85 0.22 -3.47 16 6 H 0.44 1.93 8.96 -182.73 -1.64 0.29 16 7 C 0.11 0.86 11.52 -16.56 -0.19 0.67 16 8 C -0.28 -3.30 6.13 -105.06 -0.64 -3.94 16 9 C 0.59 8.01 7.81 -12.52 -0.10 7.91 16 10 O -0.54 -8.93 14.92 5.27 0.08 -8.85 16 11 N -0.72 -8.85 5.49 -61.38 -0.34 -9.18 16 12 C 0.13 1.89 5.14 -4.04 -0.02 1.87 16 13 C -0.11 -1.79 2.50 -88.47 -0.22 -2.01 16 14 H 0.08 1.23 8.04 -51.93 -0.42 0.82 16 15 C 0.14 2.75 6.65 -2.53 -0.02 2.74 16 16 N -0.61 -15.02 3.39 -170.07 -0.58 -15.60 16 17 C -0.23 -6.25 10.28 -15.06 -0.15 -6.40 16 18 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 19 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 20 N -0.92 -26.70 10.31 55.49 0.57 -26.12 16 21 Si 0.91 21.79 29.55 -169.99 -5.02 16.77 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 C 0.18 4.31 4.97 -3.07 -0.02 4.30 16 26 C -0.11 -1.95 3.01 -88.78 -0.27 -2.22 16 27 H 0.07 1.18 8.04 -51.93 -0.42 0.76 16 28 C -0.13 -2.04 9.13 37.16 0.34 -1.70 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.10 1.25 6.56 -51.93 -0.34 0.91 16 34 H 0.19 0.83 7.46 -52.49 -0.39 0.44 16 35 H 0.40 3.95 7.40 -40.82 -0.30 3.64 16 36 H 0.07 1.04 7.96 -51.93 -0.41 0.63 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.02 0.39 7.91 -51.93 -0.41 -0.02 16 40 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.05 1.26 7.06 -51.93 -0.37 0.89 16 42 H 0.04 1.09 7.51 -51.93 -0.39 0.70 16 43 H 0.05 0.82 8.13 -51.93 -0.42 0.40 16 44 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 366.20 15.07 5.52 5.52 Total: -1.00 -33.85 366.20 -9.27 -43.12 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -8.44 Total: 0.52 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -1.72 Total: 0.31 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: 0.31 Total: -57.38 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.08 Total: -8.85 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.85 -9.27 -43.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092763695.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.609 kcal (2) G-P(sol) polarization free energy of solvation -33.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds