Wall clock time and date at job start Fri Apr 10 2020 17:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50700 * 109.46826 * 2 1 4 4 N 1.30450 * 125.99031 * 270.16638 * 3 2 1 5 5 N 1.39929 * 108.89507 * 180.27057 * 4 3 2 6 6 H 0.96999 * 125.75072 * 179.73890 * 5 4 3 7 7 C 1.34258 * 108.49762 * 359.73567 * 5 4 3 8 8 C 1.38048 * 107.41227 * 0.02562 * 7 5 4 9 9 C 1.47430 * 126.41163 * 179.97438 * 8 7 5 10 10 O 1.21607 * 119.99857 * 180.02562 * 9 8 7 11 11 N 1.34778 * 120.00461 * 0.03160 * 9 8 7 12 12 C 1.46490 * 120.00109 * 179.97438 * 11 9 8 13 13 C 1.53005 * 109.47021 * 179.97438 * 12 11 9 14 14 H 1.08993 * 110.91543 * 51.09254 * 13 12 11 15 15 C 1.54913 * 111.00185 * 287.19367 * 13 12 11 16 16 N 1.47425 * 104.83172 * 204.91813 * 15 13 12 17 17 C 1.36934 * 125.64598 * 204.16741 * 16 15 13 18 18 H 1.08001 * 120.00082 * 359.97438 * 17 16 15 19 19 C 1.38818 * 120.00056 * 179.97438 * 17 16 15 20 20 N 1.31621 * 119.99528 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00255 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47048 * 89.99818 * 21 19 17 23 23 H 1.48496 * 109.47094 * 209.99851 * 21 19 17 24 24 H 1.48503 * 109.47024 * 330.00057 * 21 19 17 25 25 C 1.47016 * 108.70144 * 24.12623 * 16 15 13 26 26 C 1.54322 * 107.27584 * 358.94568 * 25 16 15 27 27 H 1.08994 * 110.72057 * 96.34399 * 26 25 16 28 28 C 1.53006 * 110.71873 * 219.44305 * 26 25 16 29 29 H 1.08997 * 109.46596 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47104 * 299.99802 * 1 2 3 31 31 H 1.08998 * 109.46875 * 60.00052 * 1 2 3 32 32 H 1.09001 * 109.47104 * 240.00198 * 2 1 3 33 33 H 1.08998 * 109.46875 * 119.99947 * 2 1 3 34 34 H 1.07995 * 126.29520 * 179.97438 * 7 5 4 35 35 H 0.96998 * 119.99319 * 359.97438 * 11 9 8 36 36 H 1.09004 * 109.47511 * 59.99549 * 12 11 9 37 37 H 1.08997 * 109.47250 * 299.99462 * 12 11 9 38 38 H 1.08996 * 110.36871 * 86.07638 * 15 13 12 39 39 H 1.08998 * 110.36705 * 323.75587 * 15 13 12 40 40 H 0.97004 * 119.99644 * 179.97438 * 20 19 17 41 41 H 1.09005 * 109.88603 * 239.52323 * 25 16 15 42 42 H 1.09005 * 110.00815 * 118.43507 * 25 16 15 43 43 H 1.08994 * 109.47357 * 58.54604 * 28 26 25 44 44 H 1.08998 * 109.46865 * 178.54365 * 28 26 25 45 45 H 1.08994 * 109.46919 * 298.54190 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2849 2.1446 -1.0555 5 7 2.7377 3.4031 -0.6442 6 1 2.9984 4.1309 -1.2300 7 6 2.7504 3.4335 0.6980 8 6 2.3096 2.2034 1.1432 9 6 2.1613 1.7831 2.5486 10 8 1.7609 0.6650 2.8097 11 7 2.4694 2.6381 3.5438 12 6 2.3214 2.2206 4.9402 13 6 2.7354 3.3691 5.8625 14 1 2.2247 4.2920 5.5879 15 6 4.2725 3.5615 5.8541 16 7 4.5799 4.2003 7.1467 17 6 5.6799 4.9705 7.4146 18 1 6.4128 5.1525 6.6425 19 6 5.8531 5.5175 8.6787 20 7 4.9597 5.2962 9.6195 21 14 7.3540 6.5676 9.0444 22 1 7.0489 7.9894 8.7428 23 1 7.7153 6.4323 10.4783 24 1 8.4911 6.1161 8.2026 25 6 3.5093 3.8743 8.1001 26 6 2.4744 3.0101 7.3492 27 1 2.6532 1.9503 7.5300 28 6 1.0506 3.3942 7.7570 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.0511 4.2667 1.3158 35 1 2.7890 3.5299 3.3354 36 1 2.9568 1.3555 5.1301 37 1 1.2815 1.9568 5.1323 38 1 4.5692 4.2104 5.0302 39 1 4.7750 2.5972 5.7785 40 1 5.0809 5.6781 10.5029 41 1 3.0385 4.7905 8.4565 42 1 3.9174 3.3156 8.9424 43 1 0.8828 4.4492 7.5407 44 1 0.3369 2.7905 7.1965 45 1 0.9179 3.2165 8.8241 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092763695.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:56:22 Heat of formation + Delta-G solvation = 20.045011 kcal Electronic energy + Delta-G solvation = -25111.241680 eV Core-core repulsion = 21550.284158 eV Total energy + Delta-G solvation = -3560.957523 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.40604 -40.37330 -39.33121 -36.04878 -35.13179 -34.56424 -32.50964 -31.89952 -31.26580 -30.18779 -27.79052 -26.60413 -25.02054 -24.72271 -23.66120 -21.74128 -21.42620 -20.83106 -20.36082 -19.37149 -18.75446 -17.40582 -17.09541 -16.48456 -16.42853 -15.92019 -15.63054 -15.54502 -15.41774 -14.98146 -14.72365 -14.49711 -14.34042 -14.08897 -13.88242 -13.39963 -13.25895 -13.20905 -13.06094 -12.80529 -12.67242 -12.42072 -12.35566 -12.14106 -11.91177 -11.80874 -11.76262 -11.51096 -11.35679 -11.30417 -10.75150 -10.66741 -10.53153 -10.08989 -9.68866 -8.85735 -7.81845 -5.16987 0.57489 1.11891 1.47149 1.48873 1.57365 1.82246 2.35212 2.50927 2.51930 3.36284 3.48155 3.66557 3.77434 3.81997 3.99620 4.01229 4.19194 4.25372 4.42044 4.46413 4.49819 4.55605 4.60389 4.66516 4.72255 4.79507 4.91157 4.93476 5.02786 5.07721 5.13529 5.19529 5.22531 5.31118 5.39005 5.45017 5.49052 5.50854 5.59162 5.75847 5.86082 6.23606 6.28143 6.50981 6.74276 7.13695 7.39228 7.81990 8.46594 9.28358 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.020395 B = 0.002993 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.540765 B = 9352.355464 C =10366.450900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.050 4.050 3 C 0.124 3.876 4 N -0.324 5.324 5 N -0.448 5.448 6 H 0.460 0.540 7 C 0.134 3.866 8 C -0.318 4.318 9 C 0.591 3.409 10 O -0.579 6.579 11 N -0.714 5.714 12 C 0.148 3.852 13 C -0.088 4.088 14 H 0.092 0.908 15 C 0.137 3.863 16 N -0.629 5.629 17 C -0.239 4.239 18 H 0.084 0.916 19 C -0.068 4.068 20 N -0.951 5.951 21 Si 0.976 3.024 22 H -0.284 1.284 23 H -0.298 1.298 24 H -0.269 1.269 25 C 0.192 3.808 26 C -0.102 4.102 27 H 0.072 0.928 28 C -0.127 4.127 29 H 0.075 0.925 30 H 0.043 0.957 31 H 0.055 0.945 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.229 0.771 35 H 0.410 0.590 36 H 0.056 0.944 37 H 0.073 0.927 38 H 0.052 0.948 39 H 0.015 0.985 40 H 0.245 0.755 41 H 0.016 0.984 42 H -0.003 1.003 43 H 0.050 0.950 44 H 0.075 0.925 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.515 -3.450 -19.703 21.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.090 4.090 3 C -0.044 4.044 4 N -0.147 5.147 5 N -0.153 5.153 6 H 0.309 0.691 7 C -0.021 4.021 8 C -0.333 4.333 9 C 0.380 3.620 10 O -0.460 6.460 11 N -0.366 5.366 12 C 0.024 3.976 13 C -0.108 4.108 14 H 0.110 0.890 15 C 0.012 3.988 16 N -0.355 5.355 17 C -0.368 4.368 18 H 0.102 0.898 19 C -0.261 4.261 20 N -0.601 5.601 21 Si 0.805 3.195 22 H -0.211 1.211 23 H -0.225 1.225 24 H -0.194 1.194 25 C 0.067 3.933 26 C -0.122 4.122 27 H 0.091 0.909 28 C -0.185 4.185 29 H 0.094 0.906 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.245 0.755 35 H 0.246 0.754 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.071 0.929 39 H 0.033 0.967 40 H 0.054 0.946 41 H 0.034 0.966 42 H 0.015 0.985 43 H 0.069 0.931 44 H 0.094 0.906 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.679 -4.087 -20.639 22.759 hybrid contribution 1.343 1.409 1.402 2.399 sum -7.336 -2.678 -19.237 20.762 Atomic orbital electron populations 1.21550 0.93381 1.02755 1.01208 1.20113 0.97058 0.88048 1.03735 1.22648 0.95188 0.97389 0.89152 1.77101 1.22849 0.92071 1.22696 1.46149 1.50156 1.13062 1.05957 0.69120 1.23751 0.93971 0.98559 0.85787 1.20312 1.22119 0.97233 0.93653 1.17464 0.76244 0.84075 0.84239 1.90717 1.48749 1.21693 1.84864 1.45719 1.67802 1.17559 1.05480 1.21103 1.01304 0.95996 0.79200 1.22469 0.95774 0.98371 0.94180 0.88973 1.21780 0.93683 0.95254 0.88048 1.44795 1.23619 1.58220 1.08882 1.19470 0.98855 1.22181 0.96323 0.89798 1.25642 1.01548 1.02708 0.96226 1.70199 1.36860 1.49857 1.03149 0.85106 0.79243 0.78568 0.76585 1.21121 1.22499 1.19416 1.20966 0.87049 0.94959 0.90354 1.22312 0.96147 0.99406 0.94335 0.90929 1.21635 0.94294 1.01292 1.01238 0.90569 0.93826 0.92618 0.89671 0.89699 0.75490 0.75367 0.92610 0.90841 0.92937 0.96685 0.94567 0.96556 0.98509 0.93078 0.90597 0.93080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 9.90 71.98 0.71 -1.81 16 2 C -0.05 -1.08 5.97 29.85 0.18 -0.90 16 3 C 0.12 2.83 6.52 43.51 0.28 3.12 16 4 N -0.32 -6.78 12.63 -46.68 -0.59 -7.37 16 5 N -0.45 -5.76 7.29 -56.32 -0.41 -6.17 16 6 H 0.46 2.40 8.96 -213.43 -1.91 0.49 16 7 C 0.13 1.70 11.52 84.28 0.97 2.68 16 8 C -0.32 -6.77 6.13 -20.15 -0.12 -6.89 16 9 C 0.59 15.10 7.81 86.66 0.68 15.77 16 10 O -0.58 -18.79 14.92 -4.05 -0.06 -18.85 16 11 N -0.71 -15.57 5.49 -466.37 -2.56 -18.13 16 12 C 0.15 3.80 5.14 86.38 0.44 4.25 16 13 C -0.09 -2.62 2.50 -9.40 -0.02 -2.64 16 14 H 0.09 2.57 8.04 -2.39 -0.02 2.55 16 15 C 0.14 5.11 6.65 86.86 0.58 5.69 16 16 N -0.63 -31.28 3.39 -691.99 -2.35 -33.63 16 17 C -0.24 -13.09 10.28 84.04 0.86 -12.23 16 18 H 0.08 4.34 7.83 -2.91 -0.02 4.31 16 19 C -0.07 -3.85 5.49 84.86 0.47 -3.39 16 20 N -0.95 -57.00 10.31 21.65 0.22 -56.77 16 21 Si 0.98 45.15 29.55 68.60 2.03 47.18 16 22 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 23 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 24 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 25 C 0.19 9.26 4.97 86.73 0.43 9.70 16 26 C -0.10 -3.53 3.01 -9.60 -0.03 -3.56 16 27 H 0.07 2.46 8.04 -2.39 -0.02 2.44 16 28 C -0.13 -3.66 9.13 71.98 0.66 -3.00 16 29 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.08 2.12 6.56 -2.39 -0.02 2.10 16 34 H 0.23 0.82 7.46 -2.91 -0.02 0.80 16 35 H 0.41 6.61 7.40 -92.71 -0.69 5.92 16 36 H 0.06 1.61 7.96 -2.39 -0.02 1.60 16 37 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.02 0.59 7.91 -2.39 -0.02 0.57 16 40 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 41 H 0.02 0.88 7.06 -2.38 -0.02 0.86 16 42 H 0.00 -0.19 7.51 -2.38 -0.02 -0.21 16 43 H 0.05 1.49 8.13 -2.39 -0.02 1.47 16 44 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -76.29 366.20 0.77 -75.52 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -1.59 Total: 11.45 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: 6.08 Total: 6.78 kcal Atomic # 7 Polarization: -116.39 SS G_CDS: -5.69 Total: -122.07 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.06 Total: -18.85 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -76.29 0.77 -75.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092763695.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.562 kcal (2) G-P(sol) polarization free energy of solvation -76.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds