Wall clock time and date at job start Fri Apr 10 2020 17:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 110.92193 * 2 1 4 4 C 1.54915 * 111.00370 * 236.09469 * 2 1 3 5 5 N 1.47425 * 104.83334 * 204.91773 * 4 2 1 6 6 C 1.34777 * 125.65136 * 204.16738 * 5 4 2 7 7 O 1.21281 * 120.00173 * 179.97438 * 6 5 4 8 8 C 1.50706 * 119.99667 * 359.95409 * 6 5 4 9 9 C 1.50692 * 109.46855 * 180.02562 * 8 6 5 10 10 N 1.30504 * 125.65213 * 305.02340 * 9 8 6 11 11 C 1.34127 * 109.25571 * 180.02562 * 10 9 8 12 12 C 1.34670 * 108.02482 * 0.02562 * 11 10 9 13 13 N 1.35046 * 125.65060 * 124.72259 * 9 8 6 14 14 H 0.96997 * 126.39568 * 359.97438 * 13 9 8 15 15 C 1.47022 * 108.70334 * 24.12789 * 5 4 2 16 16 C 1.54327 * 107.27336 * 358.94217 * 15 5 4 17 17 H 1.08993 * 110.72079 * 96.16743 * 16 15 5 18 18 C 1.52997 * 110.72042 * 219.44597 * 16 15 5 19 19 C 1.52995 * 109.47288 * 293.54006 * 18 16 15 20 20 N 1.46492 * 109.47655 * 180.02562 * 19 18 16 21 21 C 1.36944 * 120.00368 * 180.02562 * 20 19 18 22 22 H 1.07992 * 119.99613 * 359.97438 * 21 20 19 23 23 C 1.38807 * 119.99892 * 180.02562 * 21 20 19 24 24 N 1.31615 * 120.00446 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99808 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47386 * 359.97438 * 25 23 21 27 27 H 1.48506 * 109.47225 * 119.99707 * 25 23 21 28 28 H 1.48498 * 109.47526 * 239.99532 * 25 23 21 29 29 H 1.09006 * 109.47371 * 296.09887 * 1 2 3 30 30 H 1.09002 * 109.47302 * 56.09664 * 1 2 3 31 31 H 1.08999 * 109.47292 * 176.09915 * 1 2 3 32 32 H 1.08997 * 110.36462 * 86.07767 * 4 2 1 33 33 H 1.08999 * 110.46102 * 323.80240 * 4 2 1 34 34 H 1.08997 * 109.46784 * 300.00107 * 8 6 5 35 35 H 1.09002 * 109.46871 * 60.00068 * 8 6 5 36 36 H 1.08000 * 125.98899 * 180.02562 * 11 10 9 37 37 H 1.07990 * 126.59495 * 179.97438 * 12 11 10 38 38 H 1.08997 * 109.88723 * 239.52626 * 15 5 4 39 39 H 1.09000 * 110.01436 * 118.43179 * 15 5 4 40 40 H 1.08993 * 109.47505 * 53.54362 * 18 16 15 41 41 H 1.09004 * 109.46953 * 173.54249 * 18 16 15 42 42 H 1.09005 * 109.47454 * 300.00756 * 19 18 16 43 43 H 1.09004 * 109.46926 * 60.00226 * 19 18 16 44 44 H 0.97001 * 119.99919 * 359.97438 * 20 19 18 45 45 H 0.96999 * 120.00662 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8067 -1.2003 5 7 3.4270 -1.2432 -0.7733 6 6 4.4480 -1.5604 -1.5939 7 8 5.5134 -1.9081 -1.1301 8 6 4.2657 -1.4836 -3.0880 9 6 5.5467 -1.8866 -3.7717 10 7 6.7198 -1.3536 -3.5643 11 6 7.6255 -1.9602 -4.3458 12 6 6.9896 -2.9046 -5.0651 13 7 5.6720 -2.8629 -4.6963 14 1 4.9607 -3.4271 -5.0375 15 6 3.4674 -1.2742 0.6960 16 6 2.0861 -0.8079 1.2023 17 1 1.4467 -1.6631 1.4210 18 6 2.2350 0.0877 2.4338 19 6 2.7848 -0.7360 3.6000 20 7 2.9268 0.1213 4.7793 21 6 3.4051 -0.4005 5.9517 22 1 3.6771 -1.4442 6.0068 23 6 3.5391 0.4118 7.0692 24 7 3.2070 1.6836 7.0021 25 14 4.1908 -0.3002 8.6685 26 1 4.4888 -1.7430 8.4830 27 1 5.4317 0.4157 9.0598 28 1 3.1696 -0.1393 9.7346 29 1 -0.3634 0.4521 0.9229 30 1 -0.3634 0.5732 -0.8529 31 1 -0.3634 -1.0253 -0.0699 32 1 2.1559 -0.1721 -2.0837 33 1 1.4524 -1.6705 -1.4043 34 1 3.4647 -2.1577 -3.3913 35 1 4.0081 -0.4628 -3.3705 36 1 8.6801 -1.7314 -4.3904 37 1 7.4345 -3.5703 -5.7897 38 1 4.2425 -0.5998 1.0600 39 1 3.6661 -2.2884 1.0424 40 1 2.9223 0.9031 2.2091 41 1 1.2618 0.4970 2.7051 42 1 2.0974 -1.5517 3.8247 43 1 3.7579 -1.1454 3.3287 44 1 2.6827 1.0588 4.7297 45 1 3.3010 2.2513 7.7830 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104836068.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:56:44 Heat of formation + Delta-G solvation = 29.140883 kcal Electronic energy + Delta-G solvation = -24568.047580 eV Core-core repulsion = 21007.484484 eV Total energy + Delta-G solvation = -3560.563096 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.26930 -40.19186 -38.04578 -35.11164 -33.35722 -32.70708 -32.26801 -32.02252 -30.16350 -28.14122 -26.64274 -26.46197 -24.11781 -22.47950 -21.81445 -21.21519 -20.67683 -20.07037 -19.42874 -18.10492 -17.21740 -16.97591 -16.40067 -15.78219 -14.89360 -14.75501 -14.68632 -14.38129 -14.19917 -13.94303 -13.78729 -13.41385 -13.33161 -13.17305 -13.05142 -12.72262 -12.66085 -12.40337 -12.13930 -11.72968 -11.43245 -11.13791 -11.01104 -10.82227 -10.58927 -10.41169 -10.24583 -10.22105 -10.12362 -9.91717 -9.88582 -9.62541 -8.82472 -8.68965 -8.64210 -6.86731 -5.71870 -3.00183 1.74897 2.55191 2.62327 2.93139 3.15253 3.47307 3.52953 3.55280 4.01875 4.30290 4.34172 4.51302 4.58857 4.69826 4.78648 4.87210 4.95968 5.11821 5.17343 5.24453 5.26129 5.33673 5.44033 5.50118 5.55470 5.62501 5.73102 5.81069 5.82638 5.91786 6.02295 6.03425 6.11998 6.19151 6.32897 6.41791 6.43312 6.53191 6.88754 6.93210 7.05354 7.43167 7.75707 7.92832 8.12605 8.47450 9.58416 10.16981 10.51318 11.51306 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.017196 B = 0.002590 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.933735 B =10809.321306 C =12094.162864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 H 0.088 0.912 4 C 0.101 3.899 5 N -0.621 5.621 6 C 0.529 3.471 7 O -0.511 6.511 8 C -0.049 4.049 9 C 0.216 3.784 10 N -0.458 5.458 11 C -0.025 4.025 12 C -0.058 4.058 13 N -0.567 5.567 14 H 0.417 0.583 15 C 0.113 3.887 16 C -0.089 4.089 17 H 0.085 0.915 18 C -0.115 4.115 19 C 0.151 3.849 20 N -0.734 5.734 21 C -0.237 4.237 22 H 0.070 0.930 23 C -0.016 4.016 24 N -0.934 5.934 25 Si 0.907 3.093 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.292 1.292 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.105 0.895 35 H 0.118 0.882 36 H 0.170 0.830 37 H 0.177 0.823 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.017 0.983 43 H 0.019 0.981 44 H 0.383 0.617 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.298 -7.855 -29.226 30.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 H 0.107 0.893 4 C -0.022 4.022 5 N -0.356 5.356 6 C 0.315 3.685 7 O -0.385 6.385 8 C -0.091 4.091 9 C -0.048 4.048 10 N -0.177 5.177 11 C -0.174 4.174 12 C -0.191 4.191 13 N -0.171 5.171 14 H 0.254 0.746 15 C -0.009 4.009 16 C -0.108 4.108 17 H 0.104 0.896 18 C -0.153 4.153 19 C 0.023 3.977 20 N -0.378 5.378 21 C -0.368 4.368 22 H 0.088 0.912 23 C -0.212 4.212 24 N -0.584 5.584 25 Si 0.738 3.262 26 H -0.206 1.206 27 H -0.218 1.218 28 H -0.219 1.219 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.123 0.877 35 H 0.136 0.864 36 H 0.187 0.813 37 H 0.194 0.806 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.035 0.965 43 H 0.037 0.963 44 H 0.217 0.783 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.334 -7.545 -28.344 29.520 hybrid contribution -0.167 -1.030 0.130 1.052 sum -3.501 -8.575 -28.214 29.695 Atomic orbital electron populations 1.21697 0.93614 1.02032 1.02449 1.22435 0.96263 0.99678 0.93736 0.89334 1.22469 0.83389 0.98235 0.98106 1.48477 1.12103 1.67595 1.07441 1.19717 0.83094 0.78102 0.87565 1.90808 1.25138 1.45584 1.76937 1.19888 0.92144 1.04770 0.92252 1.22345 0.96001 0.91844 0.94614 1.70275 0.98223 1.27511 1.21719 1.22420 0.99914 0.97533 0.97525 1.22735 0.83702 1.05939 1.06735 1.43215 1.10029 1.30031 1.33827 0.74597 1.22101 0.98341 1.02116 0.78348 1.22283 0.95020 0.98750 0.94748 0.89625 1.21727 1.01889 0.98124 0.93562 1.20684 0.97001 0.93259 0.86711 1.42374 1.78535 1.09645 1.07274 1.19289 1.34665 0.94501 0.88330 0.91159 1.24743 1.02443 0.95773 0.98232 1.69667 1.54619 1.04562 1.29509 0.86114 0.78179 0.78053 0.83867 1.20555 1.21849 1.21908 0.91545 0.92522 0.92437 0.90755 0.91226 0.87723 0.86369 0.81287 0.80572 0.90632 0.91346 0.91626 0.91321 0.96498 0.96273 0.78336 0.93609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.31 37.15 0.35 -0.70 16 2 C -0.10 -0.92 3.09 -88.47 -0.27 -1.19 16 3 H 0.09 0.86 8.05 -51.93 -0.42 0.44 16 4 C 0.10 0.78 6.16 -2.53 -0.02 0.77 16 5 N -0.62 -7.19 3.33 -170.51 -0.57 -7.76 16 6 C 0.53 6.94 7.84 -10.98 -0.09 6.86 16 7 O -0.51 -9.38 15.88 5.56 0.09 -9.30 16 8 C -0.05 -0.42 5.33 -29.04 -0.15 -0.57 16 9 C 0.22 2.40 6.96 -155.41 -1.08 1.31 16 10 N -0.46 -6.59 10.58 -10.82 -0.11 -6.70 16 11 C -0.03 -0.28 11.87 -17.81 -0.21 -0.49 16 12 C -0.06 -0.47 12.04 -16.56 -0.20 -0.67 16 13 N -0.57 -4.38 6.15 -10.23 -0.06 -4.44 16 14 H 0.42 1.59 8.96 -40.82 -0.37 1.22 16 15 C 0.11 1.54 5.61 -3.06 -0.02 1.52 16 16 C -0.09 -1.05 2.45 -88.78 -0.22 -1.27 16 17 H 0.09 0.97 8.04 -51.93 -0.42 0.55 16 18 C -0.11 -1.78 4.71 -26.73 -0.13 -1.90 16 19 C 0.15 3.07 6.11 -4.05 -0.02 3.04 16 20 N -0.73 -19.16 5.60 -59.91 -0.34 -19.49 16 21 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 22 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 23 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 24 N -0.93 -28.92 13.06 55.49 0.72 -28.20 16 25 Si 0.91 23.03 29.55 -169.99 -5.02 18.00 16 26 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 27 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 28 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 32 H 0.07 0.41 7.48 -51.93 -0.39 0.03 16 33 H 0.07 0.43 7.99 -51.93 -0.41 0.02 16 34 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.12 0.79 7.85 -51.93 -0.41 0.38 16 36 H 0.17 1.53 8.06 -52.49 -0.42 1.10 16 37 H 0.18 0.76 8.06 -52.49 -0.42 0.33 16 38 H 0.08 1.21 7.76 -51.93 -0.40 0.81 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.07 1.06 8.06 -51.93 -0.42 0.65 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.02 0.41 7.49 -51.93 -0.39 0.02 16 44 H 0.38 10.42 7.67 -40.82 -0.31 10.10 16 45 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 370.95 15.07 5.59 5.59 Total: -1.00 -38.73 370.95 -9.29 -48.02 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -7.28 Total: 5.15 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -2.31 Total: -0.87 kcal Atomic # 7 Polarization: -66.23 SS G_CDS: -0.36 Total: -66.59 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.09 Total: -9.30 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.02 Total: 18.00 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -38.73 -9.29 -48.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104836068.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.159 kcal (2) G-P(sol) polarization free energy of solvation -38.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds