Wall clock time and date at job start Fri Apr 10 2020 17:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 110.92193 * 2 1 4 4 C 1.54915 * 111.00370 * 236.09469 * 2 1 3 5 5 N 1.47425 * 104.83334 * 204.91773 * 4 2 1 6 6 C 1.34777 * 125.65136 * 204.16738 * 5 4 2 7 7 O 1.21281 * 120.00173 * 179.97438 * 6 5 4 8 8 C 1.50706 * 119.99667 * 359.95409 * 6 5 4 9 9 C 1.50692 * 109.46855 * 180.02562 * 8 6 5 10 10 N 1.30504 * 125.65213 * 305.02340 * 9 8 6 11 11 C 1.34127 * 109.25571 * 180.02562 * 10 9 8 12 12 C 1.34670 * 108.02482 * 0.02562 * 11 10 9 13 13 N 1.35046 * 125.65060 * 124.72259 * 9 8 6 14 14 H 0.96997 * 126.39568 * 359.97438 * 13 9 8 15 15 C 1.47022 * 108.70334 * 24.12789 * 5 4 2 16 16 C 1.54327 * 107.27336 * 358.94217 * 15 5 4 17 17 H 1.08993 * 110.72079 * 96.16743 * 16 15 5 18 18 C 1.52997 * 110.72042 * 219.44597 * 16 15 5 19 19 C 1.52995 * 109.47288 * 293.54006 * 18 16 15 20 20 N 1.46492 * 109.47655 * 180.02562 * 19 18 16 21 21 C 1.36944 * 120.00368 * 180.02562 * 20 19 18 22 22 H 1.07992 * 119.99613 * 359.97438 * 21 20 19 23 23 C 1.38807 * 119.99892 * 180.02562 * 21 20 19 24 24 N 1.31615 * 120.00446 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99808 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47386 * 359.97438 * 25 23 21 27 27 H 1.48506 * 109.47225 * 119.99707 * 25 23 21 28 28 H 1.48498 * 109.47526 * 239.99532 * 25 23 21 29 29 H 1.09006 * 109.47371 * 296.09887 * 1 2 3 30 30 H 1.09002 * 109.47302 * 56.09664 * 1 2 3 31 31 H 1.08999 * 109.47292 * 176.09915 * 1 2 3 32 32 H 1.08997 * 110.36462 * 86.07767 * 4 2 1 33 33 H 1.08999 * 110.46102 * 323.80240 * 4 2 1 34 34 H 1.08997 * 109.46784 * 300.00107 * 8 6 5 35 35 H 1.09002 * 109.46871 * 60.00068 * 8 6 5 36 36 H 1.08000 * 125.98899 * 180.02562 * 11 10 9 37 37 H 1.07990 * 126.59495 * 179.97438 * 12 11 10 38 38 H 1.08997 * 109.88723 * 239.52626 * 15 5 4 39 39 H 1.09000 * 110.01436 * 118.43179 * 15 5 4 40 40 H 1.08993 * 109.47505 * 53.54362 * 18 16 15 41 41 H 1.09004 * 109.46953 * 173.54249 * 18 16 15 42 42 H 1.09005 * 109.47454 * 300.00756 * 19 18 16 43 43 H 1.09004 * 109.46926 * 60.00226 * 19 18 16 44 44 H 0.97001 * 119.99919 * 359.97438 * 20 19 18 45 45 H 0.96999 * 120.00662 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8067 -1.2003 5 7 3.4270 -1.2432 -0.7733 6 6 4.4480 -1.5604 -1.5939 7 8 5.5134 -1.9081 -1.1301 8 6 4.2657 -1.4836 -3.0880 9 6 5.5467 -1.8866 -3.7717 10 7 6.7198 -1.3536 -3.5643 11 6 7.6255 -1.9602 -4.3458 12 6 6.9896 -2.9046 -5.0651 13 7 5.6720 -2.8629 -4.6963 14 1 4.9607 -3.4271 -5.0375 15 6 3.4674 -1.2742 0.6960 16 6 2.0861 -0.8079 1.2023 17 1 1.4467 -1.6631 1.4210 18 6 2.2350 0.0877 2.4338 19 6 2.7848 -0.7360 3.6000 20 7 2.9268 0.1213 4.7793 21 6 3.4051 -0.4005 5.9517 22 1 3.6771 -1.4442 6.0068 23 6 3.5391 0.4118 7.0692 24 7 3.2070 1.6836 7.0021 25 14 4.1908 -0.3002 8.6685 26 1 4.4888 -1.7430 8.4830 27 1 5.4317 0.4157 9.0598 28 1 3.1696 -0.1393 9.7346 29 1 -0.3634 0.4521 0.9229 30 1 -0.3634 0.5732 -0.8529 31 1 -0.3634 -1.0253 -0.0699 32 1 2.1559 -0.1721 -2.0837 33 1 1.4524 -1.6705 -1.4043 34 1 3.4647 -2.1577 -3.3913 35 1 4.0081 -0.4628 -3.3705 36 1 8.6801 -1.7314 -4.3904 37 1 7.4345 -3.5703 -5.7897 38 1 4.2425 -0.5998 1.0600 39 1 3.6661 -2.2884 1.0424 40 1 2.9223 0.9031 2.2091 41 1 1.2618 0.4970 2.7051 42 1 2.0974 -1.5517 3.8247 43 1 3.7579 -1.1454 3.3287 44 1 2.6827 1.0588 4.7297 45 1 3.3010 2.2513 7.7830 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104836068.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:56:43 Heat of formation + Delta-G solvation = 0.847900 kcal Electronic energy + Delta-G solvation = -24569.274456 eV Core-core repulsion = 21007.484484 eV Total energy + Delta-G solvation = -3561.789972 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.97031 -41.13723 -39.09169 -36.87070 -34.68848 -33.52166 -33.40114 -32.98698 -31.72903 -29.20171 -27.82444 -27.15708 -25.80649 -24.01590 -22.51693 -22.24414 -21.70286 -21.02213 -20.30975 -19.17831 -18.79537 -18.01521 -17.37617 -16.68109 -16.64332 -15.88111 -15.61319 -15.48939 -15.39005 -15.11281 -14.85998 -14.65691 -14.45849 -14.28770 -13.96800 -13.74844 -13.57677 -13.20853 -13.15173 -13.00078 -12.88966 -12.61742 -12.47956 -12.26784 -12.08142 -11.91593 -11.63058 -11.52558 -11.16710 -10.99071 -10.97609 -10.95762 -10.85715 -9.65698 -9.34836 -9.02947 -7.98268 -5.27446 1.06869 1.44670 1.46300 1.56394 1.62694 1.83571 2.25036 2.39885 2.53665 3.31540 3.35168 3.48374 3.57146 3.69137 3.91704 4.02132 4.14241 4.27244 4.33134 4.39037 4.42913 4.45055 4.53327 4.54960 4.65816 4.69169 4.75110 4.78496 4.79621 4.92638 4.97352 5.06185 5.13452 5.21202 5.27393 5.30763 5.36208 5.44625 5.47651 5.58980 5.82426 6.24967 6.49370 6.60176 7.17930 7.22363 7.30511 8.06717 8.30047 9.25609 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.017196 B = 0.002590 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.933735 B =10809.321306 C =12094.162864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.096 4.096 3 H 0.080 0.920 4 C 0.100 3.900 5 N -0.618 5.618 6 C 0.521 3.479 7 O -0.578 6.578 8 C -0.038 4.038 9 C 0.198 3.802 10 N -0.520 5.520 11 C -0.072 4.072 12 C -0.032 4.032 13 N -0.552 5.552 14 H 0.437 0.563 15 C 0.113 3.887 16 C -0.078 4.078 17 H 0.099 0.901 18 C -0.101 4.101 19 C 0.149 3.851 20 N -0.749 5.749 21 C -0.248 4.248 22 H 0.072 0.928 23 C -0.077 4.077 24 N -0.969 5.969 25 Si 0.975 3.025 26 H -0.268 1.268 27 H -0.293 1.293 28 H -0.288 1.288 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.108 0.892 33 H 0.099 0.901 34 H 0.154 0.846 35 H 0.141 0.859 36 H 0.173 0.827 37 H 0.218 0.782 38 H 0.038 0.962 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.074 0.926 42 H 0.023 0.977 43 H 0.008 0.992 44 H 0.374 0.626 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.465 -9.356 -31.838 33.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.115 4.115 3 H 0.098 0.902 4 C -0.021 4.021 5 N -0.352 5.352 6 C 0.309 3.691 7 O -0.457 6.457 8 C -0.079 4.079 9 C -0.067 4.067 10 N -0.240 5.240 11 C -0.220 4.220 12 C -0.167 4.167 13 N -0.157 5.157 14 H 0.279 0.721 15 C -0.010 4.010 16 C -0.098 4.098 17 H 0.118 0.882 18 C -0.139 4.139 19 C 0.023 3.977 20 N -0.391 5.391 21 C -0.380 4.380 22 H 0.090 0.910 23 C -0.269 4.269 24 N -0.620 5.620 25 Si 0.804 3.196 26 H -0.192 1.192 27 H -0.220 1.220 28 H -0.215 1.215 29 H 0.071 0.929 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.126 0.874 33 H 0.117 0.883 34 H 0.171 0.829 35 H 0.159 0.841 36 H 0.191 0.809 37 H 0.235 0.765 38 H 0.057 0.943 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.093 0.907 42 H 0.041 0.959 43 H 0.026 0.974 44 H 0.206 0.794 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.568 -9.077 -31.011 32.788 hybrid contribution 0.540 -0.597 0.905 1.211 sum -5.028 -9.674 -30.106 32.020 Atomic orbital electron populations 1.21676 0.91742 1.03155 1.02743 1.22421 0.97639 0.98903 0.92551 0.90195 1.22792 0.81197 0.99717 0.98350 1.48574 1.13602 1.66797 1.06215 1.20639 0.82167 0.76670 0.89589 1.90777 1.27807 1.48699 1.78390 1.20014 0.92495 1.07349 0.88040 1.22694 0.96026 0.92534 0.95460 1.70170 1.00236 1.29948 1.23660 1.22761 1.00505 0.99575 0.99139 1.23292 0.83473 1.04442 1.05486 1.43165 1.10550 1.29242 1.32744 0.72140 1.21903 0.98365 1.00277 0.80462 1.22177 0.94341 0.98971 0.94286 0.88240 1.21565 1.01300 0.97681 0.93321 1.20861 0.96775 0.93457 0.86621 1.42617 1.78372 1.09854 1.08276 1.19671 1.34077 0.94699 0.89522 0.90971 1.25605 1.03364 0.96242 1.01707 1.69816 1.56064 1.05798 1.30309 0.85053 0.77228 0.77841 0.79525 1.19231 1.21977 1.21473 0.92940 0.90341 0.91162 0.87398 0.88255 0.82867 0.84132 0.80939 0.76517 0.94328 0.92930 0.92962 0.90690 0.95864 0.97363 0.79398 0.93873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.31 71.98 0.67 -0.85 16 2 C -0.10 -1.49 3.09 -9.40 -0.03 -1.51 16 3 H 0.08 1.41 8.05 -2.39 -0.02 1.39 16 4 C 0.10 1.16 6.16 86.86 0.53 1.69 16 5 N -0.62 -13.57 3.33 -811.77 -2.70 -16.27 16 6 C 0.52 13.37 7.84 87.66 0.69 14.05 16 7 O -0.58 -22.28 15.88 -3.03 -0.05 -22.33 16 8 C -0.04 -0.54 5.33 29.10 0.16 -0.39 16 9 C 0.20 4.12 6.96 138.12 0.96 5.08 16 10 N -0.52 -15.30 10.58 -188.13 -1.99 -17.29 16 11 C -0.07 -1.65 11.87 83.52 0.99 -0.66 16 12 C -0.03 -0.45 12.04 83.09 1.00 0.55 16 13 N -0.55 -7.07 6.15 -186.28 -1.15 -8.22 16 14 H 0.44 1.67 8.96 -92.71 -0.83 0.84 16 15 C 0.11 3.18 5.61 86.73 0.49 3.66 16 16 C -0.08 -1.80 2.45 -9.60 -0.02 -1.82 16 17 H 0.10 2.06 8.04 -2.39 -0.02 2.04 16 18 C -0.10 -3.16 4.71 30.59 0.14 -3.01 16 19 C 0.15 6.23 6.11 86.38 0.53 6.76 16 20 N -0.75 -40.17 5.60 -343.47 -1.92 -42.09 16 21 C -0.25 -14.60 9.99 84.03 0.84 -13.76 16 22 H 0.07 4.13 7.83 -2.91 -0.02 4.10 16 23 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 24 N -0.97 -61.15 13.06 21.65 0.28 -60.87 16 25 Si 0.97 47.88 29.55 68.60 2.03 49.91 16 26 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 27 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 28 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 29 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 30 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.07 0.64 8.08 -2.39 -0.02 0.62 16 32 H 0.11 0.62 7.48 -2.39 -0.02 0.60 16 33 H 0.10 0.67 7.99 -2.39 -0.02 0.65 16 34 H 0.15 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.14 1.38 7.85 -2.39 -0.02 1.36 16 36 H 0.17 3.36 8.06 -2.91 -0.02 3.34 16 37 H 0.22 1.06 8.06 -2.92 -0.02 1.04 16 38 H 0.04 1.35 7.76 -2.39 -0.02 1.33 16 39 H 0.05 1.60 8.14 -2.39 -0.02 1.59 16 40 H 0.05 1.77 8.06 -2.39 -0.02 1.75 16 41 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 42 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 43 H 0.01 0.37 7.49 -2.38 -0.02 0.35 16 44 H 0.37 21.05 7.67 -92.71 -0.71 20.34 16 45 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -90.49 370.95 1.37 -89.13 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: -0.55 Total: 22.39 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: 7.41 Total: 5.64 kcal Atomic # 7 Polarization: -137.27 SS G_CDS: -7.48 Total: -144.74 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.05 Total: -22.33 kcal Atomic # 14 Polarization: 47.88 SS G_CDS: 2.03 Total: 49.91 kcal Total: -90.49 1.37 -89.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104836068.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.976 kcal (2) G-P(sol) polarization free energy of solvation -90.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds