Wall clock time and date at job start Fri Apr 10 2020 17:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46894 * 111.00271 * 2 1 4 4 C 1.52999 * 109.47357 * 293.95794 * 3 2 1 5 5 C 1.50702 * 109.47313 * 180.02562 * 4 3 2 6 6 O 1.21276 * 119.99944 * 359.97438 * 5 4 3 7 7 N 1.34778 * 119.99920 * 180.02562 * 5 4 3 8 8 C 1.46504 * 120.00182 * 359.97438 * 7 5 4 9 9 C 1.46494 * 119.99993 * 179.97438 * 7 5 4 10 10 C 1.50702 * 109.47170 * 89.99745 * 9 7 5 11 11 H 1.07994 * 120.00113 * 0.02562 * 10 9 7 12 12 C 1.37883 * 119.99988 * 180.02562 * 10 9 7 13 13 N 1.31513 * 120.00103 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99778 * 179.97438 * 12 10 9 15 15 H 1.48495 * 109.47290 * 60.00505 * 14 12 10 16 16 H 1.48504 * 109.46991 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47414 * 299.99927 * 14 12 10 18 18 C 1.46895 * 110.99923 * 123.95638 * 2 1 3 19 19 C 1.53004 * 109.47056 * 66.04396 * 18 2 1 20 20 C 1.50706 * 109.46965 * 179.97438 * 19 18 2 21 21 C 1.38386 * 120.00005 * 124.99984 * 20 19 18 22 22 N 1.32124 * 119.99712 * 180.02562 * 21 20 19 23 23 C 1.32158 * 120.00097 * 359.97438 * 22 21 20 24 24 C 1.38336 * 120.00075 * 0.26620 * 23 22 21 25 25 N 1.32127 * 120.00100 * 305.02162 * 20 19 18 26 26 H 1.09003 * 109.46672 * 296.04718 * 1 2 3 27 27 H 1.09002 * 109.47158 * 56.04346 * 1 2 3 28 28 H 1.08998 * 109.47506 * 176.04269 * 1 2 3 29 29 H 1.09007 * 109.47298 * 53.95511 * 3 2 1 30 30 H 1.08997 * 109.47456 * 173.95144 * 3 2 1 31 31 H 1.09003 * 109.47303 * 299.99427 * 4 3 2 32 32 H 1.08998 * 109.47265 * 59.99837 * 4 3 2 33 33 H 1.09002 * 109.46564 * 90.00086 * 8 7 5 34 34 H 1.09004 * 109.47072 * 210.00088 * 8 7 5 35 35 H 1.09002 * 109.46769 * 330.00497 * 8 7 5 36 36 H 1.09003 * 109.47673 * 209.99535 * 9 7 5 37 37 H 1.09001 * 109.47321 * 329.99746 * 9 7 5 38 38 H 0.96997 * 120.00267 * 179.97438 * 13 12 10 39 39 H 1.09000 * 109.47214 * 306.04278 * 18 2 1 40 40 H 1.08999 * 109.47130 * 186.04364 * 18 2 1 41 41 H 1.09000 * 109.47206 * 59.99876 * 19 18 2 42 42 H 1.08999 * 109.47125 * 299.99971 * 19 18 2 43 43 H 1.08005 * 120.00186 * 0.03930 * 21 20 19 44 44 H 1.08002 * 119.99718 * 179.97438 * 23 22 21 45 45 H 1.07998 * 120.00403 * 179.72028 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6315 2.0575 -1.3182 5 6 2.1722 3.4641 -1.3184 6 8 2.7876 3.8774 -0.3586 7 7 1.9709 4.2633 -2.3849 8 6 1.2269 3.7643 -3.5442 9 6 2.4960 5.6309 -2.3850 10 6 3.8880 5.6345 -2.9623 11 1 4.3365 4.7106 -3.2963 12 6 4.5890 6.8174 -3.0643 13 7 4.0431 7.9425 -2.6571 14 14 6.3147 6.8218 -3.7793 15 1 6.2749 6.3074 -5.1717 16 1 6.8470 8.2081 -3.7794 17 1 7.1939 5.9536 -2.9558 18 6 1.9954 -0.7660 1.1375 19 6 1.6314 -2.2427 0.9702 20 6 2.1720 -3.0286 2.1369 21 6 1.3222 -3.8154 2.8944 22 7 1.7961 -4.5040 3.9176 23 6 3.0817 -4.4418 4.2173 24 6 3.9303 -3.6514 3.4631 25 7 3.4572 -2.9661 2.4368 26 1 -0.3633 0.4513 0.9233 27 1 -0.3633 0.5740 -0.8524 28 1 -0.3634 -1.0252 -0.0709 29 1 1.5612 1.9273 0.8310 30 1 3.0797 1.3443 0.1083 31 1 2.0658 1.5016 -2.1492 32 1 0.5472 2.0845 -1.4264 33 1 0.1659 3.9771 -3.4140 34 1 1.5882 4.2566 -4.4471 35 1 1.3732 2.6878 -3.6338 36 1 1.8503 6.2680 -2.9894 37 1 2.5255 6.0088 -1.3630 38 1 4.5363 8.7746 -2.7285 39 1 1.5611 -0.3873 2.0628 40 1 3.0797 -0.6612 1.1755 41 1 2.0657 -2.6214 0.0450 42 1 0.5471 -2.3475 0.9322 43 1 0.2716 -3.8667 2.6491 44 1 3.4690 -5.0044 5.0539 45 1 4.9801 -3.5970 3.7107 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271372799.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:55:14 Heat of formation + Delta-G solvation = -9.958842 kcal Electronic energy + Delta-G solvation = -24131.521704 eV Core-core repulsion = 20569.263117 eV Total energy + Delta-G solvation = -3562.258587 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.03028 -40.73509 -38.77649 -36.59236 -35.59183 -34.75628 -34.22764 -32.30499 -30.17678 -29.41183 -27.74101 -27.21940 -25.89558 -25.36997 -24.39494 -22.72166 -21.69537 -19.90132 -18.70228 -18.56165 -18.05668 -17.82295 -17.15529 -17.08957 -16.78021 -16.35089 -16.16455 -15.79104 -15.60240 -15.05323 -14.87458 -14.47721 -14.26061 -13.93014 -13.82940 -13.49919 -13.43244 -13.25208 -13.16060 -13.09942 -12.87616 -12.70286 -12.59893 -12.51104 -12.35639 -12.19224 -12.06973 -11.85668 -11.80559 -11.70961 -10.64799 -10.60124 -10.16600 -9.99877 -9.41159 -9.36442 -8.22784 -6.37832 -0.17529 0.16242 1.36009 1.40599 1.47859 1.85190 2.28184 2.41560 2.71765 2.92660 3.06358 3.20976 3.38761 3.55255 3.81924 3.89507 3.97528 4.07060 4.12555 4.24823 4.34501 4.42560 4.43268 4.53845 4.59210 4.60999 4.68802 4.73252 4.75426 4.92466 4.96034 5.00522 5.03611 5.07367 5.10568 5.19079 5.22988 5.45700 5.56163 5.84703 5.97167 6.06012 6.11060 6.33515 6.69399 6.80392 6.83748 7.27889 7.49608 8.84014 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.021603 B = 0.002279 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.776532 B =12283.683560 C =13151.035346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 N -0.539 5.539 3 C 0.080 3.920 4 C -0.114 4.114 5 C 0.493 3.507 6 O -0.604 6.604 7 N -0.612 5.612 8 C 0.078 3.922 9 C 0.258 3.742 10 C -0.543 4.543 11 H 0.053 0.947 12 C 0.005 3.995 13 N -0.929 5.929 14 Si 0.969 3.031 15 H -0.259 1.259 16 H -0.278 1.278 17 H -0.278 1.278 18 C 0.069 3.931 19 C -0.052 4.052 20 C 0.074 3.926 21 C 0.048 3.952 22 N -0.462 5.462 23 C 0.040 3.960 24 C 0.048 3.952 25 N -0.467 5.467 26 H 0.022 0.978 27 H 0.081 0.919 28 H 0.096 0.904 29 H 0.023 0.977 30 H 0.057 0.943 31 H 0.117 0.883 32 H 0.119 0.881 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.096 0.904 36 H 0.024 0.976 37 H -0.005 1.005 38 H 0.267 0.733 39 H 0.025 0.975 40 H 0.063 0.937 41 H 0.095 0.905 42 H 0.111 0.889 43 H 0.193 0.807 44 H 0.199 0.801 45 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.084 -26.728 6.782 29.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.263 5.263 3 C -0.049 4.049 4 C -0.153 4.153 5 C 0.282 3.718 6 O -0.486 6.486 7 N -0.343 5.343 8 C -0.064 4.064 9 C 0.136 3.864 10 C -0.582 4.582 11 H 0.071 0.929 12 C -0.194 4.194 13 N -0.569 5.569 14 Si 0.793 3.207 15 H -0.183 1.183 16 H -0.203 1.203 17 H -0.204 1.204 18 C -0.060 4.060 19 C -0.091 4.091 20 C -0.067 4.067 21 C -0.111 4.111 22 N -0.176 5.176 23 C -0.120 4.120 24 C -0.112 4.112 25 N -0.183 5.183 26 H 0.041 0.959 27 H 0.099 0.901 28 H 0.114 0.886 29 H 0.041 0.959 30 H 0.075 0.925 31 H 0.135 0.865 32 H 0.137 0.863 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.115 0.885 36 H 0.042 0.958 37 H 0.013 0.987 38 H 0.076 0.924 39 H 0.043 0.957 40 H 0.082 0.918 41 H 0.113 0.887 42 H 0.130 0.870 43 H 0.210 0.790 44 H 0.215 0.785 45 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -8.617 -26.546 6.827 28.733 hybrid contribution 0.940 1.204 0.691 1.677 sum -7.677 -25.342 7.518 27.526 Atomic orbital electron populations 1.22686 0.85909 1.03969 1.01156 1.61978 1.09356 1.12126 1.42812 1.21604 0.99638 0.88008 0.95604 1.21558 1.03717 0.89677 1.00380 1.21438 0.79603 0.88918 0.81873 1.90632 1.44058 1.77170 1.36744 1.48212 1.54060 1.14431 1.17582 1.21956 0.95888 1.01031 0.87511 1.18744 0.93366 0.78831 0.95431 1.21682 1.01275 0.93780 1.41427 0.92874 1.25898 1.02734 0.94943 0.95807 1.70045 1.39694 0.99159 1.47966 0.85455 0.78699 0.77321 0.79269 1.18313 1.20273 1.20407 1.21920 1.00050 0.93146 0.90866 1.20481 1.02333 0.91775 0.94491 1.22481 0.90200 0.96290 0.97719 1.24020 1.02693 0.93158 0.91255 1.68500 1.15667 1.18514 1.14967 1.24266 0.89500 0.97595 1.00601 1.24284 1.03335 0.92620 0.90939 1.68297 1.15020 1.19029 1.15923 0.95927 0.90085 0.88556 0.95877 0.92466 0.86525 0.86284 0.90983 0.91726 0.88510 0.95816 0.98651 0.92390 0.95687 0.91820 0.88671 0.87042 0.78970 0.78456 0.78944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.13 127.69 1.17 1.32 16 2 N -0.54 -11.30 4.76 -922.46 -4.39 -15.69 16 3 C 0.08 2.29 4.25 86.30 0.37 2.65 16 4 C -0.11 -3.14 4.18 29.85 0.12 -3.01 16 5 C 0.49 20.78 7.67 87.66 0.67 21.46 16 6 O -0.60 -32.25 15.56 -3.02 -0.05 -32.30 16 7 N -0.61 -26.32 2.86 -851.12 -2.43 -28.75 16 8 C 0.08 2.29 10.24 127.77 1.31 3.60 16 9 C 0.26 14.26 5.16 85.63 0.44 14.70 16 10 C -0.54 -32.00 9.39 25.60 0.24 -31.76 16 11 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 12 C 0.01 0.30 5.46 84.66 0.46 0.76 16 13 N -0.93 -57.18 13.29 21.45 0.28 -56.89 16 14 Si 0.97 45.67 29.54 68.60 2.03 47.69 16 15 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 16 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 17 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 18 C 0.07 1.40 4.82 86.31 0.42 1.81 16 19 C -0.05 -0.75 5.55 29.85 0.17 -0.58 16 20 C 0.07 1.24 6.18 42.55 0.26 1.50 16 21 C 0.05 0.70 10.85 84.68 0.92 1.62 16 22 N -0.46 -7.67 10.50 -195.22 -2.05 -9.72 16 23 C 0.04 0.51 11.22 84.67 0.95 1.46 16 24 C 0.05 0.69 11.22 84.67 0.95 1.64 16 25 N -0.47 -9.22 10.05 -183.29 -1.84 -11.06 16 26 H 0.02 0.36 8.14 -2.39 -0.02 0.34 16 27 H 0.08 1.09 6.30 -2.39 -0.02 1.08 16 28 H 0.10 0.93 6.47 -2.39 -0.02 0.91 16 29 H 0.02 0.74 8.08 -2.38 -0.02 0.72 16 30 H 0.06 1.92 7.89 -2.39 -0.02 1.90 16 31 H 0.12 2.81 7.40 -2.39 -0.02 2.79 16 32 H 0.12 2.51 6.44 -2.39 -0.02 2.49 16 33 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.06 2.02 8.07 -2.39 -0.02 2.00 16 35 H 0.10 2.11 6.44 -2.39 -0.02 2.10 16 36 H 0.02 1.32 8.07 -2.39 -0.02 1.30 16 37 H 0.00 -0.30 7.42 -2.39 -0.02 -0.32 16 38 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 39 H 0.02 0.54 8.12 -2.39 -0.02 0.52 16 40 H 0.06 1.59 7.75 -2.39 -0.02 1.57 16 41 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.11 0.94 6.30 -2.39 -0.02 0.93 16 43 H 0.19 1.55 7.96 -2.91 -0.02 1.52 16 44 H 0.20 1.11 8.06 -2.91 -0.02 1.08 16 45 H 0.19 1.57 8.06 -2.91 -0.02 1.54 16 Total: -1.00 -82.26 372.58 0.97 -81.29 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: 0.97 Total: 8.27 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: 8.45 Total: 17.16 kcal Atomic # 7 Polarization: -111.68 SS G_CDS: -10.43 Total: -122.11 kcal Atomic # 8 Polarization: -32.25 SS G_CDS: -0.05 Total: -32.30 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.69 kcal Total: -82.26 0.97 -81.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271372799.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.331 kcal (2) G-P(sol) polarization free energy of solvation -82.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds