Wall clock time and date at job start Fri Apr 10 2020 17:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46493 * 109.47177 * 2 1 4 4 C 1.46505 * 120.00393 * 270.00531 * 3 2 1 5 5 C 1.50705 * 109.46605 * 269.99939 * 4 3 2 6 6 H 1.07998 * 120.00307 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99620 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00019 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99762 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47142 * 90.00634 * 9 7 5 11 11 H 1.48502 * 109.47378 * 210.00339 * 9 7 5 12 12 H 1.48496 * 109.47326 * 330.00495 * 9 7 5 13 13 C 1.34777 * 120.00225 * 90.00312 * 3 2 1 14 14 O 1.21283 * 120.00431 * 180.02562 * 13 3 2 15 15 C 1.50700 * 119.99644 * 359.97438 * 13 3 2 16 16 N 1.46896 * 109.47216 * 180.02562 * 15 13 3 17 17 C 1.48531 * 111.00030 * 307.39503 * 16 15 13 18 18 C 1.54939 * 103.23057 * 200.27702 * 17 16 15 19 19 C 1.54606 * 102.91794 * 37.41391 * 18 17 16 20 20 H 1.09000 * 110.39140 * 219.08223 * 19 18 17 21 21 N 1.46500 * 110.30602 * 96.95855 * 19 18 17 22 22 C 1.34947 * 126.04040 * 329.28656 * 21 19 18 23 23 C 1.35311 * 107.75028 * 180.02562 * 22 21 19 24 24 C 1.39876 * 107.91749 * 359.97438 * 23 22 21 25 25 N 1.30834 * 108.20073 * 0.27043 * 24 23 22 26 26 C 1.47900 * 111.00121 * 189.99954 * 16 15 13 27 27 H 1.08995 * 109.47301 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46591 * 299.99919 * 1 2 3 29 29 H 1.08997 * 109.47567 * 59.99661 * 1 2 3 30 30 H 1.09002 * 109.46591 * 240.00081 * 2 1 3 31 31 H 1.08996 * 109.46852 * 120.00534 * 2 1 3 32 32 H 1.09003 * 109.47115 * 29.99370 * 4 3 2 33 33 H 1.08995 * 109.47395 * 150.00188 * 4 3 2 34 34 H 0.97001 * 120.00105 * 179.97438 * 8 7 5 35 35 H 1.08994 * 109.47388 * 59.99991 * 15 13 3 36 36 H 1.09008 * 109.47480 * 300.00151 * 15 13 3 37 37 H 1.08996 * 110.66640 * 318.71478 * 17 16 15 38 38 H 1.09003 * 110.66600 * 81.67549 * 17 16 15 39 39 H 1.08997 * 110.72417 * 279.06033 * 18 17 16 40 40 H 1.08994 * 110.72735 * 155.77119 * 18 17 16 41 41 H 1.08009 * 126.12504 * 0.02894 * 22 21 19 42 42 H 1.07992 * 126.04231 * 179.97438 * 23 22 21 43 43 H 1.08002 * 125.89548 * 179.97438 * 24 23 22 44 44 H 1.08997 * 109.92191 * 26.48957 * 26 16 15 45 45 H 1.09007 * 109.91783 * 265.19656 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3426 1.2302 -1.0963 7 6 4.1490 2.3898 -2.8780 8 7 3.3490 3.1259 -3.6180 9 14 5.9134 2.0968 -3.4169 10 1 5.9774 0.8755 -4.2594 11 1 6.3921 3.2641 -4.2002 12 1 6.7735 1.9179 -2.2196 13 6 2.2431 2.0165 1.1672 14 8 2.6469 3.1601 1.1672 15 6 1.9914 1.3062 2.4723 16 7 2.3092 2.2063 3.5888 17 6 3.6765 2.7687 3.4466 18 6 4.0248 3.2225 4.8866 19 6 3.3911 2.1158 5.7606 20 1 2.9439 2.5481 6.6556 21 7 4.3994 1.1184 6.1279 22 6 5.4727 0.7653 5.3900 23 6 6.1515 -0.1827 6.0766 24 6 5.4700 -0.4166 7.2755 25 7 4.4166 0.3588 7.3048 26 6 2.3050 1.4768 4.8754 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.5816 1.6878 -2.0284 33 1 2.0955 3.1411 -1.1383 34 1 3.6750 3.5165 -4.4439 35 1 2.6212 0.4186 2.5302 36 1 0.9432 1.0124 2.5299 37 1 4.3736 2.0034 3.1053 38 1 3.6742 3.6176 2.7630 39 1 3.5753 4.1911 5.1050 40 1 5.1048 3.2561 5.0298 41 1 5.7417 1.1675 4.4244 42 1 7.0590 -0.6722 5.7556 43 1 5.7604 -1.1197 8.0421 44 1 2.5350 0.4249 4.7066 45 1 1.3307 1.5744 5.3545 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291611929.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:55:29 Heat of formation + Delta-G solvation = 65.415854 kcal Electronic energy + Delta-G solvation = -25791.713499 eV Core-core repulsion = 22232.723404 eV Total energy + Delta-G solvation = -3558.990095 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.45240 -39.68594 -38.10681 -35.35590 -33.54959 -32.78515 -30.52811 -30.28766 -30.13444 -28.59489 -27.63017 -25.79570 -23.10380 -22.74734 -22.38925 -21.30720 -21.15318 -19.98038 -18.49536 -17.45363 -16.65267 -16.37924 -15.84467 -15.80984 -15.04022 -14.87164 -14.81968 -14.38165 -14.11355 -13.72746 -13.48402 -13.41728 -13.20787 -12.78865 -12.63683 -12.35652 -12.23276 -12.05069 -11.89310 -11.74058 -11.47790 -11.31514 -11.17293 -11.16226 -10.93059 -10.81200 -10.68872 -10.56365 -10.13386 -9.67792 -9.57020 -8.90225 -8.76257 -8.47475 -8.35113 -7.70825 -6.08171 -4.13242 1.76762 2.31374 2.73270 3.26402 3.31835 3.34317 3.38576 3.61928 4.12730 4.17310 4.35007 4.41901 4.71275 4.71973 4.80380 4.98437 5.12811 5.15680 5.20175 5.26489 5.35211 5.43456 5.45175 5.50252 5.56296 5.61078 5.62494 5.72783 5.75783 5.88535 5.94753 5.99323 6.18316 6.30376 6.44374 6.52498 6.73847 6.79637 6.95732 7.06706 7.41468 7.51097 7.58972 7.88069 8.19294 8.37209 8.85804 9.05074 9.52029 10.99822 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.014805 B = 0.003773 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.812233 B = 7418.954174 C = 8233.942018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.596 5.596 4 C 0.248 3.752 5 C -0.527 4.527 6 H 0.056 0.944 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.507 3.493 14 O -0.528 6.528 15 C 0.027 3.973 16 N -0.494 5.494 17 C 0.030 3.970 18 C -0.134 4.134 19 C 0.149 3.851 20 H 0.112 0.888 21 N -0.363 5.363 22 C 0.057 3.943 23 C -0.278 4.278 24 C 0.041 3.959 25 N -0.300 5.300 26 C 0.025 3.975 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.061 0.939 32 H 0.032 0.968 33 H 0.044 0.956 34 H 0.263 0.737 35 H 0.058 0.942 36 H 0.100 0.900 37 H 0.040 0.960 38 H 0.127 0.873 39 H 0.099 0.901 40 H 0.082 0.918 41 H 0.171 0.829 42 H 0.146 0.854 43 H 0.181 0.819 44 H 0.053 0.947 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.671 -7.056 17.384 18.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 N -0.328 5.328 4 C 0.129 3.871 5 C -0.566 4.566 6 H 0.074 0.926 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.725 3.275 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.200 1.200 13 C 0.293 3.707 14 O -0.405 6.405 15 C -0.104 4.104 16 N -0.219 5.219 17 C -0.097 4.097 18 C -0.173 4.173 19 C 0.046 3.954 20 H 0.130 0.870 21 N -0.146 5.146 22 C -0.089 4.089 23 C -0.307 4.307 24 C -0.145 4.145 25 N -0.121 5.121 26 C -0.104 4.104 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.080 0.920 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.118 0.882 37 H 0.058 0.942 38 H 0.144 0.856 39 H 0.117 0.883 40 H 0.100 0.900 41 H 0.188 0.812 42 H 0.164 0.836 43 H 0.198 0.802 44 H 0.072 0.928 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.007 -5.466 17.796 18.724 hybrid contribution 2.261 -1.360 -0.980 2.815 sum 0.254 -6.826 16.816 18.150 Atomic orbital electron populations 1.22221 0.96662 1.01446 1.02439 1.21422 0.93638 0.84228 1.02569 1.48250 1.63715 1.13190 1.07672 1.19267 0.96209 0.93660 0.77997 1.21411 0.96919 1.31941 1.06296 0.92612 1.24928 0.97812 0.94902 0.96389 1.69929 1.35688 1.33322 1.14306 0.86516 0.84684 0.77722 0.78595 1.20642 1.21047 1.19961 1.20030 0.78853 0.87052 0.84791 1.90589 1.45458 1.17779 1.86630 1.22349 1.02800 0.94508 0.90780 1.64758 1.27316 1.29838 0.99985 1.23649 0.87851 1.01904 0.96270 1.23030 1.01263 0.98168 0.94869 1.22196 0.87153 0.86664 0.99355 0.87006 1.48946 1.20025 1.31320 1.14272 1.22599 0.89540 0.98150 0.98601 1.21520 1.05618 1.06023 0.97581 1.23864 0.93121 0.99045 0.98422 1.77328 1.22010 1.09207 1.03558 1.23397 0.99084 0.96866 0.91023 0.92167 0.93000 0.91933 0.89884 0.92034 0.95047 0.93813 0.92684 0.92434 0.88233 0.94180 0.85561 0.88262 0.89973 0.81197 0.83626 0.80196 0.92827 0.88727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 10.24 37.16 0.38 -1.82 16 2 C 0.11 1.64 5.93 -4.04 -0.02 1.61 16 3 N -0.60 -12.11 2.46 -175.06 -0.43 -12.54 16 4 C 0.25 6.30 5.16 -5.19 -0.03 6.27 16 5 C -0.53 -14.56 9.39 -34.44 -0.32 -14.88 16 6 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.15 13.29 55.43 0.74 -25.42 16 9 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 13 C 0.51 10.03 7.38 -10.99 -0.08 9.95 16 14 O -0.53 -12.39 13.10 5.55 0.07 -12.32 16 15 C 0.03 0.40 4.07 -4.98 -0.02 0.38 16 16 N -0.49 -6.94 5.26 -231.90 -1.22 -8.16 16 17 C 0.03 0.43 5.13 -1.90 -0.01 0.42 16 18 C -0.13 -1.46 6.16 -24.86 -0.15 -1.62 16 19 C 0.15 1.61 4.11 -66.57 -0.27 1.34 16 20 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 21 N -0.36 -4.36 3.47 -53.54 -0.19 -4.55 16 22 C 0.06 0.66 10.08 -17.23 -0.17 0.48 16 23 C -0.28 -2.97 10.80 -40.01 -0.43 -3.40 16 24 C 0.04 0.45 12.03 -17.36 -0.21 0.24 16 25 N -0.30 -3.86 12.58 30.63 0.39 -3.47 16 26 C 0.03 0.29 6.50 -2.76 -0.02 0.27 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.64 7.22 -51.93 -0.37 0.27 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 31 H 0.06 0.80 6.44 -51.93 -0.33 0.47 16 32 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 33 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.06 0.79 7.07 -51.93 -0.37 0.42 16 36 H 0.10 1.29 7.18 -51.92 -0.37 0.91 16 37 H 0.04 0.59 6.83 -51.93 -0.35 0.23 16 38 H 0.13 2.22 5.96 -51.93 -0.31 1.91 16 39 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.08 0.84 7.19 -51.93 -0.37 0.47 16 41 H 0.17 1.78 6.51 -52.48 -0.34 1.43 16 42 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 43 H 0.18 1.33 8.06 -52.49 -0.42 0.91 16 44 H 0.05 0.65 7.35 -51.93 -0.38 0.27 16 45 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 361.70 15.07 5.45 5.45 Total: -1.00 -32.80 361.70 -8.61 -41.42 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -6.94 Total: 2.27 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: -1.46 Total: 0.89 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: -0.71 Total: -54.13 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: 0.07 Total: -12.32 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.80 -8.61 -41.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291611929.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.831 kcal (2) G-P(sol) polarization free energy of solvation -32.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds