Wall clock time and date at job start Fri Apr 10 2020 17:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46498 * 120.00163 * 2 1 4 4 C 1.50694 * 109.47276 * 270.00008 * 3 2 1 5 5 H 1.08002 * 119.99975 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00004 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00175 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99895 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47310 * 89.99936 * 8 6 4 10 10 H 1.48507 * 109.46863 * 209.99904 * 8 6 4 11 11 H 1.48497 * 109.47202 * 329.99671 * 8 6 4 12 12 C 1.34776 * 119.99981 * 179.97438 * 2 1 3 13 13 O 1.21279 * 120.00151 * 179.97438 * 12 2 1 14 14 C 1.50702 * 120.00151 * 0.02562 * 12 2 1 15 15 C 1.52995 * 109.47289 * 179.97438 * 14 12 2 16 16 N 1.46909 * 109.47149 * 176.55510 * 15 14 12 17 17 C 1.48558 * 110.99997 * 174.86647 * 16 15 14 18 18 C 1.54379 * 104.59345 * 200.96418 * 17 16 15 19 19 C 1.54257 * 105.05965 * 23.85325 * 18 17 16 20 20 H 1.09004 * 110.32071 * 118.89665 * 19 18 17 21 21 N 1.46497 * 110.32418 * 240.99898 * 19 18 17 22 22 C 1.34955 * 126.03729 * 31.89261 * 21 19 18 23 23 C 1.35312 * 107.74552 * 179.83664 * 22 21 19 24 24 C 1.39871 * 107.92422 * 0.42277 * 23 22 21 25 25 N 1.30842 * 108.19638 * 359.73795 * 24 23 22 26 26 C 1.48561 * 110.99635 * 59.45171 * 16 15 14 27 27 H 1.08991 * 109.47115 * 269.99987 * 1 2 3 28 28 H 1.09002 * 109.46726 * 30.00011 * 1 2 3 29 29 H 1.09003 * 109.46772 * 149.99810 * 1 2 3 30 30 H 1.09005 * 109.46999 * 30.00114 * 3 2 1 31 31 H 1.09005 * 109.46733 * 149.99853 * 3 2 1 32 32 H 0.96994 * 120.00329 * 179.97438 * 7 6 4 33 33 H 1.09007 * 109.46985 * 59.99381 * 14 12 2 34 34 H 1.08996 * 109.46774 * 300.00011 * 14 12 2 35 35 H 1.09005 * 109.46790 * 56.56471 * 15 14 12 36 36 H 1.08994 * 109.47525 * 296.56060 * 15 14 12 37 37 H 1.09001 * 110.40936 * 82.18778 * 17 16 15 38 38 H 1.09000 * 110.50999 * 319.79450 * 17 16 15 39 39 H 1.09003 * 110.32445 * 264.95818 * 18 17 16 40 40 H 1.09003 * 110.40775 * 142.79661 * 18 17 16 41 41 H 1.08001 * 126.11990 * 359.97438 * 22 21 19 42 42 H 1.08001 * 126.03671 * 180.16130 * 23 22 21 43 43 H 1.07997 * 125.90295 * 179.75698 * 24 23 22 44 44 H 1.09004 * 110.41193 * 40.25852 * 26 16 15 45 45 H 1.09001 * 110.41277 * 277.82177 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4207 5 1 2.0981 1.0958 -2.2417 6 6 3.1270 2.8774 -1.6727 7 7 3.5543 3.6175 -0.6731 8 14 3.4377 3.4170 -3.4338 9 1 2.3080 4.2607 -3.8997 10 1 4.6985 4.1993 -3.4967 11 1 3.5539 2.2201 -4.3051 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0001 14 6 1.3854 -2.4723 0.0005 15 6 2.3796 -3.6352 0.0005 16 7 1.6469 -4.9059 0.0837 17 6 2.5714 -6.0624 -0.0376 18 6 1.6693 -7.2376 -0.4715 19 6 0.4492 -6.5783 -1.1468 20 1 0.3762 -6.8938 -2.1876 21 7 -0.7788 -6.9206 -0.4249 22 6 -0.8838 -7.1435 0.9019 23 6 -2.1794 -7.4257 1.1714 24 6 -2.8889 -7.3831 -0.0333 25 7 -2.0502 -7.0804 -0.9909 26 6 0.7167 -5.0602 -1.0643 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8900 -0.5139 30 1 1.6084 2.0284 0.5139 31 1 3.1499 1.1383 0.5139 32 1 4.0318 4.4430 -0.8502 33 1 0.7590 -2.5302 -0.8897 34 1 0.7584 -2.5298 0.8903 35 1 3.0461 -3.5434 0.8582 36 1 2.9650 -3.6128 -0.9186 37 1 3.0397 -6.2771 0.9229 38 1 3.3308 -5.8665 -0.7946 39 1 1.3547 -7.8146 0.3982 40 1 2.1941 -7.8782 -1.1802 41 1 -0.0784 -7.1017 1.6202 42 1 -2.5920 -7.6490 2.1442 43 1 -3.9462 -7.5677 -0.1525 44 1 1.1846 -4.7061 -1.9829 45 1 -0.2114 -4.5202 -0.8768 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292042814.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:55:59 Heat of formation + Delta-G solvation = 57.141439 kcal Electronic energy + Delta-G solvation = -25028.039703 eV Core-core repulsion = 21468.690802 eV Total energy + Delta-G solvation = -3559.348901 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.43990 -39.46762 -38.60840 -34.90784 -34.17850 -32.64811 -31.54302 -30.26888 -29.27321 -28.48904 -27.55157 -25.77875 -24.16192 -22.81862 -22.13139 -21.41481 -20.72089 -19.99412 -18.34988 -17.61085 -16.79647 -16.54952 -16.00008 -15.52521 -15.31888 -14.94683 -14.80610 -14.65959 -14.32365 -13.92321 -13.73235 -13.19974 -13.01608 -12.74909 -12.65455 -12.30519 -12.23397 -12.18718 -11.98664 -11.89338 -11.75042 -11.47315 -11.33042 -11.13093 -10.97459 -10.84208 -10.81045 -10.56568 -10.17452 -9.64431 -9.54355 -8.92675 -8.78515 -8.70853 -8.45262 -7.65565 -6.05880 -4.10792 1.77359 2.29722 2.72984 3.28431 3.34548 3.37325 3.43649 3.57637 3.94167 4.10325 4.15623 4.43554 4.62081 4.66165 4.72417 4.81782 4.94561 5.05993 5.13480 5.23448 5.29010 5.29174 5.32444 5.39236 5.45239 5.56897 5.57289 5.59378 5.68541 5.78409 5.89293 5.89591 5.99480 6.03330 6.21086 6.48035 6.55632 6.73811 6.89138 7.04549 7.42899 7.52629 7.58714 7.90426 8.21967 8.40499 8.88262 9.07508 9.54322 11.02246 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.022031 B = 0.002733 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.631972 B =10243.796573 C =10531.590776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.602 5.602 3 C 0.245 3.755 4 C -0.526 4.526 5 H 0.056 0.944 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.505 3.495 13 O -0.545 6.545 14 C -0.136 4.136 15 C 0.063 3.937 16 N -0.510 5.510 17 C 0.031 3.969 18 C -0.135 4.135 19 C 0.157 3.843 20 H 0.108 0.892 21 N -0.359 5.359 22 C 0.072 3.928 23 C -0.283 4.283 24 C 0.043 3.957 25 N -0.303 5.303 26 C 0.018 3.982 27 H 0.045 0.955 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.032 0.968 31 H 0.044 0.956 32 H 0.263 0.737 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.047 0.953 37 H 0.090 0.910 38 H 0.054 0.946 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.172 0.828 42 H 0.144 0.856 43 H 0.180 0.820 44 H 0.065 0.935 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.405 -23.268 3.018 25.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.334 5.334 3 C 0.125 3.875 4 C -0.565 4.565 5 H 0.074 0.926 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.291 3.709 13 O -0.424 6.424 14 C -0.177 4.177 15 C -0.065 4.065 16 N -0.234 5.234 17 C -0.097 4.097 18 C -0.174 4.174 19 C 0.054 3.946 20 H 0.126 0.874 21 N -0.141 5.141 22 C -0.074 4.074 23 C -0.313 4.313 24 C -0.143 4.143 25 N -0.124 5.124 26 C -0.111 4.111 27 H 0.063 0.937 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.112 0.888 35 H 0.107 0.893 36 H 0.065 0.935 37 H 0.108 0.892 38 H 0.072 0.928 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.189 0.811 42 H 0.162 0.838 43 H 0.197 0.803 44 H 0.083 0.917 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.674 -22.792 2.249 24.491 hybrid contribution 0.355 0.435 -0.840 1.011 sum -8.319 -22.357 1.408 23.896 Atomic orbital electron populations 1.21634 0.81414 1.02505 1.00463 1.48157 1.06195 1.07891 1.71193 1.19290 0.92564 0.78135 0.97479 1.21427 1.36520 1.06288 0.92291 0.92553 1.24942 0.95352 0.96392 0.97452 1.69928 1.38366 1.14348 1.30738 0.86495 0.77708 0.78581 0.84622 1.20607 1.21043 1.19941 1.20241 0.88040 0.85124 0.77488 1.90663 1.13937 1.87350 1.50429 1.21650 0.99211 0.92943 1.03895 1.22007 0.95053 0.86784 1.02689 1.65508 1.15581 1.02455 1.39905 1.23149 0.94677 0.89906 1.01989 1.22809 0.94677 0.98283 1.01629 1.22006 0.80457 0.95339 0.96754 0.87370 1.48744 1.06859 1.53047 1.05499 1.22459 0.98970 0.99478 0.86533 1.21490 0.93178 1.16830 0.99790 1.23854 0.99775 0.99715 0.90987 1.77352 0.88687 1.23545 1.22823 1.23618 0.99014 0.94344 0.94122 0.93674 0.90792 0.92550 0.95012 0.93831 0.92690 0.89860 0.88847 0.89269 0.93459 0.89209 0.92774 0.89584 0.89427 0.81072 0.83777 0.80317 0.91672 0.88958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.35 10.24 59.85 0.61 1.97 16 2 N -0.60 -12.89 2.86 -182.96 -0.52 -13.41 16 3 C 0.24 6.47 5.16 -5.20 -0.03 6.45 16 4 C -0.53 -15.07 9.39 -34.44 -0.32 -15.39 16 5 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -26.77 13.29 55.43 0.74 -26.04 16 8 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 12 C 0.51 10.40 7.67 -10.98 -0.08 10.32 16 13 O -0.55 -13.55 15.53 5.56 0.09 -13.47 16 14 C -0.14 -1.99 4.01 -27.88 -0.11 -2.10 16 15 C 0.06 0.83 4.25 -3.82 -0.02 0.82 16 16 N -0.51 -5.33 5.45 -229.97 -1.25 -6.58 16 17 C 0.03 0.25 6.49 -2.18 -0.01 0.24 16 18 C -0.14 -0.91 6.51 -25.35 -0.16 -1.07 16 19 C 0.16 1.37 4.17 -66.56 -0.28 1.09 16 20 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 21 N -0.36 -3.72 3.56 -53.53 -0.19 -3.91 16 22 C 0.07 0.67 10.20 -17.22 -0.18 0.49 16 23 C -0.28 -2.58 10.80 -40.01 -0.43 -3.01 16 24 C 0.04 0.42 12.03 -17.36 -0.21 0.21 16 25 N -0.30 -3.61 12.58 30.62 0.39 -3.23 16 26 C 0.02 0.18 5.05 -2.19 -0.01 0.17 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 29 H 0.06 0.75 6.44 -51.93 -0.33 0.42 16 30 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 31 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 32 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.08 1.12 6.37 -51.93 -0.33 0.79 16 34 H 0.09 1.24 8.11 -51.93 -0.42 0.82 16 35 H 0.09 1.28 8.01 -51.93 -0.42 0.87 16 36 H 0.05 0.68 7.97 -51.93 -0.41 0.27 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.05 0.45 7.90 -51.93 -0.41 0.04 16 39 H 0.09 0.55 6.22 -51.93 -0.32 0.22 16 40 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.17 1.26 7.31 -52.49 -0.38 0.88 16 42 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 43 H 0.18 1.21 8.06 -52.49 -0.42 0.79 16 44 H 0.07 0.64 7.98 -51.93 -0.41 0.23 16 45 H 0.09 1.04 7.66 -51.93 -0.40 0.65 16 LS Contribution 367.87 15.07 5.54 5.54 Total: -1.00 -34.69 367.87 -8.72 -43.41 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -7.15 Total: -1.08 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -1.33 Total: 1.82 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: -0.85 Total: -53.17 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.09 Total: -13.47 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.69 -8.72 -43.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292042814.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.547 kcal (2) G-P(sol) polarization free energy of solvation -34.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds