Wall clock time and date at job start Fri Apr 10 2020 17:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46498 * 120.00163 * 2 1 4 4 C 1.50694 * 109.47276 * 270.00008 * 3 2 1 5 5 H 1.08002 * 119.99975 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00004 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00175 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99895 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47310 * 89.99936 * 8 6 4 10 10 H 1.48507 * 109.46863 * 209.99904 * 8 6 4 11 11 H 1.48497 * 109.47202 * 329.99671 * 8 6 4 12 12 C 1.34776 * 119.99981 * 179.97438 * 2 1 3 13 13 O 1.21279 * 120.00151 * 179.97438 * 12 2 1 14 14 C 1.50702 * 120.00151 * 0.02562 * 12 2 1 15 15 C 1.52995 * 109.47289 * 179.97438 * 14 12 2 16 16 N 1.46909 * 109.47149 * 176.55510 * 15 14 12 17 17 C 1.48558 * 110.99997 * 174.86647 * 16 15 14 18 18 C 1.54379 * 104.59345 * 200.96418 * 17 16 15 19 19 C 1.54257 * 105.05965 * 23.85325 * 18 17 16 20 20 H 1.09004 * 110.32071 * 118.89665 * 19 18 17 21 21 N 1.46497 * 110.32418 * 240.99898 * 19 18 17 22 22 C 1.34955 * 126.03729 * 31.89261 * 21 19 18 23 23 C 1.35312 * 107.74552 * 179.83664 * 22 21 19 24 24 C 1.39871 * 107.92422 * 0.42277 * 23 22 21 25 25 N 1.30842 * 108.19638 * 359.73795 * 24 23 22 26 26 C 1.48561 * 110.99635 * 59.45171 * 16 15 14 27 27 H 1.08991 * 109.47115 * 269.99987 * 1 2 3 28 28 H 1.09002 * 109.46726 * 30.00011 * 1 2 3 29 29 H 1.09003 * 109.46772 * 149.99810 * 1 2 3 30 30 H 1.09005 * 109.46999 * 30.00114 * 3 2 1 31 31 H 1.09005 * 109.46733 * 149.99853 * 3 2 1 32 32 H 0.96994 * 120.00329 * 179.97438 * 7 6 4 33 33 H 1.09007 * 109.46985 * 59.99381 * 14 12 2 34 34 H 1.08996 * 109.46774 * 300.00011 * 14 12 2 35 35 H 1.09005 * 109.46790 * 56.56471 * 15 14 12 36 36 H 1.08994 * 109.47525 * 296.56060 * 15 14 12 37 37 H 1.09001 * 110.40936 * 82.18778 * 17 16 15 38 38 H 1.09000 * 110.50999 * 319.79450 * 17 16 15 39 39 H 1.09003 * 110.32445 * 264.95818 * 18 17 16 40 40 H 1.09003 * 110.40775 * 142.79661 * 18 17 16 41 41 H 1.08001 * 126.11990 * 359.97438 * 22 21 19 42 42 H 1.08001 * 126.03671 * 180.16130 * 23 22 21 43 43 H 1.07997 * 125.90295 * 179.75698 * 24 23 22 44 44 H 1.09004 * 110.41193 * 40.25852 * 26 16 15 45 45 H 1.09001 * 110.41277 * 277.82177 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4207 5 1 2.0981 1.0958 -2.2417 6 6 3.1270 2.8774 -1.6727 7 7 3.5543 3.6175 -0.6731 8 14 3.4377 3.4170 -3.4338 9 1 2.3080 4.2607 -3.8997 10 1 4.6985 4.1993 -3.4967 11 1 3.5539 2.2201 -4.3051 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0001 14 6 1.3854 -2.4723 0.0005 15 6 2.3796 -3.6352 0.0005 16 7 1.6469 -4.9059 0.0837 17 6 2.5714 -6.0624 -0.0376 18 6 1.6693 -7.2376 -0.4715 19 6 0.4492 -6.5783 -1.1468 20 1 0.3762 -6.8938 -2.1876 21 7 -0.7788 -6.9206 -0.4249 22 6 -0.8838 -7.1435 0.9019 23 6 -2.1794 -7.4257 1.1714 24 6 -2.8889 -7.3831 -0.0333 25 7 -2.0502 -7.0804 -0.9909 26 6 0.7167 -5.0602 -1.0643 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8900 -0.5139 30 1 1.6084 2.0284 0.5139 31 1 3.1499 1.1383 0.5139 32 1 4.0318 4.4430 -0.8502 33 1 0.7590 -2.5302 -0.8897 34 1 0.7584 -2.5298 0.8903 35 1 3.0461 -3.5434 0.8582 36 1 2.9650 -3.6128 -0.9186 37 1 3.0397 -6.2771 0.9229 38 1 3.3308 -5.8665 -0.7946 39 1 1.3547 -7.8146 0.3982 40 1 2.1941 -7.8782 -1.1802 41 1 -0.0784 -7.1017 1.6202 42 1 -2.5920 -7.6490 2.1442 43 1 -3.9462 -7.5677 -0.1525 44 1 1.1846 -4.7061 -1.9829 45 1 -0.2114 -4.5202 -0.8768 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292042814.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:55:59 Heat of formation + Delta-G solvation = 32.825443 kcal Electronic energy + Delta-G solvation = -25029.094124 eV Core-core repulsion = 21468.690802 eV Total energy + Delta-G solvation = -3560.403321 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.13588 -40.82423 -39.69054 -36.66186 -35.16932 -34.70847 -32.49921 -30.96818 -30.48052 -29.39211 -29.02776 -27.32578 -25.60974 -24.14137 -23.02062 -22.28595 -21.51614 -20.74589 -19.85668 -18.73451 -18.37518 -18.00136 -17.10265 -17.06895 -16.61739 -16.27226 -16.00716 -15.54560 -15.40510 -14.92521 -14.77090 -14.38302 -14.24293 -13.89927 -13.71514 -13.58549 -13.48269 -13.39966 -13.20305 -13.02489 -12.84669 -12.82095 -12.67841 -12.56975 -12.25341 -12.23242 -12.04991 -11.85416 -11.72866 -11.53608 -10.66935 -10.64842 -10.27752 -9.61882 -9.45294 -9.41808 -8.25170 -6.40488 1.07265 1.34456 1.37271 1.47601 1.64128 1.79769 2.05179 2.25169 2.39765 2.92496 3.04253 3.33945 3.44400 3.78380 3.89343 3.95577 4.02980 4.12893 4.17304 4.20609 4.30677 4.35556 4.54099 4.57484 4.64315 4.67714 4.79628 4.81553 4.82836 4.89784 4.91634 4.95798 4.99812 5.01656 5.06034 5.20273 5.25922 5.52735 5.69329 5.80746 5.82522 5.86949 6.03050 6.24064 6.66183 6.75435 6.88344 7.25022 7.44279 8.82055 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.022031 B = 0.002733 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.631972 B =10243.796573 C =10531.590776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.611 5.611 3 C 0.258 3.742 4 C -0.544 4.544 5 H 0.052 0.948 6 C 0.007 3.993 7 N -0.929 5.929 8 Si 0.969 3.031 9 H -0.263 1.263 10 H -0.280 1.280 11 H -0.273 1.273 12 C 0.495 3.505 13 O -0.598 6.598 14 C -0.117 4.117 15 C 0.072 3.928 16 N -0.507 5.507 17 C 0.029 3.971 18 C -0.123 4.123 19 C 0.156 3.844 20 H 0.112 0.888 21 N -0.366 5.366 22 C 0.067 3.933 23 C -0.291 4.291 24 C 0.036 3.964 25 N -0.342 5.342 26 C 0.019 3.981 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.090 0.910 30 H 0.023 0.977 31 H -0.002 1.002 32 H 0.268 0.732 33 H 0.102 0.898 34 H 0.115 0.885 35 H 0.075 0.925 36 H 0.031 0.969 37 H 0.099 0.901 38 H 0.053 0.947 39 H 0.094 0.906 40 H 0.107 0.893 41 H 0.190 0.810 42 H 0.163 0.837 43 H 0.202 0.798 44 H 0.065 0.935 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.766 -24.953 2.439 27.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.342 5.342 3 C 0.137 3.863 4 C -0.583 4.583 5 H 0.070 0.930 6 C -0.192 4.192 7 N -0.568 5.568 8 Si 0.793 3.207 9 H -0.188 1.188 10 H -0.205 1.205 11 H -0.198 1.198 12 C 0.284 3.716 13 O -0.480 6.480 14 C -0.156 4.156 15 C -0.057 4.057 16 N -0.232 5.232 17 C -0.099 4.099 18 C -0.162 4.162 19 C 0.053 3.947 20 H 0.130 0.870 21 N -0.148 5.148 22 C -0.079 4.079 23 C -0.320 4.320 24 C -0.149 4.149 25 N -0.164 5.164 26 C -0.110 4.110 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.108 0.892 30 H 0.041 0.959 31 H 0.017 0.983 32 H 0.077 0.923 33 H 0.120 0.880 34 H 0.133 0.867 35 H 0.093 0.907 36 H 0.050 0.950 37 H 0.117 0.883 38 H 0.071 0.929 39 H 0.112 0.888 40 H 0.125 0.875 41 H 0.207 0.793 42 H 0.181 0.819 43 H 0.218 0.782 44 H 0.083 0.917 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.090 -24.503 1.676 26.552 hybrid contribution 0.751 0.932 -0.589 1.334 sum -9.339 -23.571 1.088 25.377 Atomic orbital electron populations 1.21907 0.77958 1.03813 1.02564 1.48202 1.08373 1.06524 1.71146 1.18761 0.91105 0.80417 0.96053 1.21693 1.36962 1.06639 0.92987 0.92961 1.25882 0.94843 0.96386 1.02096 1.70047 1.38857 1.14821 1.33096 0.85396 0.78144 0.78221 0.78929 1.18777 1.20499 1.19765 1.21297 0.87794 0.86619 0.75865 1.90630 1.16533 1.88228 1.52590 1.21549 0.98936 0.89508 1.05657 1.21800 0.94586 0.87951 1.01329 1.65495 1.15768 1.01726 1.40180 1.23245 0.94609 0.89392 1.02625 1.22776 0.93438 0.97695 1.02243 1.22075 0.80782 0.94490 0.97305 0.86973 1.48862 1.06754 1.53281 1.05910 1.22844 0.99708 0.98912 0.86467 1.21819 0.93201 1.16548 1.00440 1.24342 1.00778 0.98789 0.90976 1.77300 0.89699 1.25176 1.24216 1.23582 0.98204 0.95405 0.93809 0.91114 0.91548 0.89184 0.95905 0.98349 0.92322 0.87999 0.86666 0.90671 0.95032 0.88288 0.92876 0.88780 0.87481 0.79338 0.81925 0.78159 0.91697 0.90128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.44 10.24 127.77 1.31 3.74 16 2 N -0.61 -26.36 2.86 -851.14 -2.43 -28.79 16 3 C 0.26 14.19 5.16 85.63 0.44 14.64 16 4 C -0.54 -31.84 9.39 25.60 0.24 -31.60 16 5 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 6 C 0.01 0.40 5.46 84.66 0.46 0.87 16 7 N -0.93 -56.72 13.29 21.45 0.28 -56.44 16 8 Si 0.97 45.21 29.54 68.60 2.03 47.23 16 9 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 12 C 0.50 20.60 7.67 87.66 0.67 21.28 16 13 O -0.60 -30.91 15.53 -3.03 -0.05 -30.96 16 14 C -0.12 -3.23 4.01 29.85 0.12 -3.11 16 15 C 0.07 1.87 4.25 86.30 0.37 2.24 16 16 N -0.51 -9.71 5.45 -881.49 -4.81 -14.51 16 17 C 0.03 0.41 6.49 86.45 0.56 0.97 16 18 C -0.12 -1.32 6.51 31.49 0.20 -1.12 16 19 C 0.16 2.41 4.17 45.88 0.19 2.60 16 20 H 0.11 1.64 8.14 -2.38 -0.02 1.62 16 21 N -0.37 -6.88 3.56 -323.26 -1.15 -8.03 16 22 C 0.07 1.09 10.20 83.54 0.85 1.94 16 23 C -0.29 -4.64 10.80 21.99 0.24 -4.41 16 24 C 0.04 0.65 12.03 85.24 1.03 1.68 16 25 N -0.34 -7.70 12.58 -57.02 -0.72 -8.41 16 26 C 0.02 0.34 5.05 86.45 0.44 0.78 16 27 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.07 2.13 8.07 -2.39 -0.02 2.11 16 29 H 0.09 2.14 6.44 -2.39 -0.02 2.12 16 30 H 0.02 1.27 8.07 -2.38 -0.02 1.25 16 31 H 0.00 -0.10 7.42 -2.38 -0.02 -0.12 16 32 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 33 H 0.10 2.49 6.37 -2.38 -0.02 2.48 16 34 H 0.12 2.75 8.11 -2.39 -0.02 2.73 16 35 H 0.07 2.17 8.01 -2.38 -0.02 2.15 16 36 H 0.03 0.91 7.97 -2.39 -0.02 0.89 16 37 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.05 0.79 7.90 -2.39 -0.02 0.77 16 39 H 0.09 0.91 6.22 -2.39 -0.01 0.89 16 40 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.19 2.24 7.31 -2.91 -0.02 2.22 16 42 H 0.16 1.85 8.06 -2.91 -0.02 1.82 16 43 H 0.20 2.34 8.06 -2.91 -0.02 2.32 16 44 H 0.06 1.19 7.98 -2.38 -0.02 1.17 16 45 H 0.08 1.67 7.66 -2.39 -0.02 1.66 16 Total: -1.00 -77.91 367.87 1.25 -76.66 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 0.97 Total: 12.75 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: 7.12 Total: 10.50 kcal Atomic # 7 Polarization: -107.37 SS G_CDS: -8.82 Total: -116.19 kcal Atomic # 8 Polarization: -30.91 SS G_CDS: -0.05 Total: -30.96 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Total: -77.91 1.25 -76.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292042814.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.490 kcal (2) G-P(sol) polarization free energy of solvation -77.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds