Wall clock time and date at job start Fri Apr 10 2020 17:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46502 * 120.00155 * 2 1 4 4 C 1.50700 * 109.46584 * 269.99921 * 3 2 1 5 5 H 1.08000 * 120.00538 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99687 * 180.02562 * 4 3 2 7 7 N 1.31522 * 120.00184 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 120.00310 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.46803 * 59.99587 * 8 6 4 10 10 H 1.48492 * 109.47389 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46797 * 299.99929 * 8 6 4 12 12 C 1.34784 * 119.99830 * 179.97438 * 2 1 3 13 13 O 1.21276 * 119.99498 * 180.02562 * 12 2 1 14 14 C 1.50694 * 119.99883 * 0.02562 * 12 2 1 15 15 C 1.53007 * 109.46998 * 179.97438 * 14 12 2 16 16 N 1.46897 * 109.47002 * 179.97438 * 15 14 12 17 17 C 1.47840 * 110.99988 * 69.15626 * 16 15 14 18 18 C 1.54906 * 104.79510 * 146.36231 * 17 16 15 19 19 C 1.55138 * 101.65573 * 322.92945 * 18 17 16 20 20 H 1.09003 * 110.70420 * 277.27538 * 19 18 17 21 21 N 1.46498 * 110.71159 * 154.03495 * 19 18 17 22 22 C 1.34946 * 126.03711 * 331.40578 * 21 19 18 23 23 C 1.35313 * 107.75010 * 179.97438 * 22 21 19 24 24 C 1.39866 * 107.91668 * 359.97438 * 23 22 21 25 25 N 1.30839 * 108.20391 * 359.74158 * 24 23 22 26 26 C 1.47446 * 110.99737 * 189.99802 * 16 15 14 27 27 H 1.09001 * 109.47433 * 269.99968 * 1 2 3 28 28 H 1.08999 * 109.47114 * 30.00354 * 1 2 3 29 29 H 1.09004 * 109.47059 * 150.00201 * 1 2 3 30 30 H 1.08998 * 109.46915 * 29.99413 * 3 2 1 31 31 H 1.08998 * 109.46944 * 149.99650 * 3 2 1 32 32 H 0.97000 * 120.00180 * 180.02562 * 7 6 4 33 33 H 1.08991 * 109.47667 * 59.99586 * 14 12 2 34 34 H 1.09003 * 109.47222 * 299.99254 * 14 12 2 35 35 H 1.09000 * 109.46985 * 59.99345 * 15 14 12 36 36 H 1.08995 * 109.46660 * 299.99425 * 15 14 12 37 37 H 1.08998 * 110.37675 * 265.18757 * 17 16 15 38 38 H 1.08993 * 110.37873 * 27.42361 * 17 16 15 39 39 H 1.09006 * 110.99331 * 81.02189 * 18 17 16 40 40 H 1.08997 * 110.99309 * 204.83425 * 18 17 16 41 41 H 1.08011 * 126.12548 * 359.94886 * 22 21 19 42 42 H 1.08004 * 126.04198 * 180.02562 * 23 22 21 43 43 H 1.08000 * 125.90009 * 179.97438 * 24 23 22 44 44 H 1.08996 * 109.88895 * 356.15286 * 26 16 15 45 45 H 1.09001 * 109.88694 * 117.33682 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7036 -1.4209 5 1 2.0981 1.0956 -2.2418 6 6 3.1269 2.8773 -1.6729 7 7 3.5543 3.6175 -0.6732 8 14 3.4389 3.4162 -3.4341 9 1 2.1415 3.5940 -4.1344 10 1 4.1813 4.7022 -3.4341 11 1 4.2413 2.3808 -4.1337 12 6 2.1388 -1.1673 0.0005 13 8 3.3516 -1.1672 0.0010 14 6 1.3853 -2.4723 0.0005 15 6 2.3795 -3.6353 0.0005 16 7 1.6450 -4.9074 0.0011 17 6 0.9543 -5.1210 -1.2884 18 6 0.9966 -6.6535 -1.5107 19 6 2.3975 -7.0131 -0.9495 20 1 3.1699 -6.8341 -1.6975 21 7 2.4306 -8.4041 -0.4911 22 6 1.3804 -9.1113 -0.0242 23 6 1.8248 -10.3496 0.2922 24 6 3.1934 -10.4011 0.0084 25 7 3.5564 -9.2373 -0.4668 26 6 2.5549 -6.0428 0.2402 27 1 -0.3634 0.0000 1.0277 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6084 2.0284 0.5137 31 1 3.1498 1.1384 0.5139 32 1 4.0311 4.4434 -0.8505 33 1 0.7589 -2.5303 -0.8896 34 1 0.7584 -2.5299 0.8904 35 1 3.0063 -3.5775 0.8905 36 1 3.0061 -3.5776 -0.8895 37 1 -0.0774 -4.7747 -1.2283 38 1 1.4809 -4.6049 -2.0911 39 1 0.2095 -7.1520 -0.9449 40 1 0.9267 -6.8963 -2.5710 41 1 0.3667 -8.7530 0.0790 42 1 1.2281 -11.1560 0.6923 43 1 3.8384 -11.2552 0.1526 44 1 3.5840 -5.6879 0.2957 45 1 2.2835 -6.5465 1.1679 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292044610.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:56:03 Heat of formation + Delta-G solvation = 56.783616 kcal Electronic energy + Delta-G solvation = -24644.341407 eV Core-core repulsion = 21084.976990 eV Total energy + Delta-G solvation = -3559.364417 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.52777 -39.52258 -38.64888 -34.90404 -34.21035 -32.64517 -31.43965 -30.39378 -29.78461 -28.25975 -27.43920 -25.77541 -24.07299 -22.90686 -22.35865 -21.44000 -20.66730 -20.18800 -18.36799 -17.80741 -16.72023 -16.54335 -16.02779 -15.42859 -15.34390 -14.93127 -14.87794 -14.63503 -14.22547 -14.15861 -13.61721 -13.39373 -13.18855 -12.93471 -12.80370 -12.36337 -12.24863 -12.14465 -12.00295 -11.86275 -11.66268 -11.48126 -11.34704 -11.14093 -10.96924 -10.91666 -10.80871 -10.55938 -10.17569 -9.68304 -9.66133 -8.92617 -8.92097 -8.55816 -8.44806 -7.65513 -6.05633 -4.10665 1.63456 2.15410 2.60635 3.29873 3.34546 3.35733 3.43921 3.54166 3.90337 4.03638 4.24081 4.43207 4.47880 4.50697 4.64244 4.76778 4.91351 5.07095 5.10954 5.23461 5.26950 5.30540 5.32275 5.35039 5.45234 5.55152 5.57273 5.59252 5.64693 5.75391 5.79513 5.90307 6.00834 6.03158 6.20350 6.39473 6.63328 6.76692 6.77792 7.04740 7.43213 7.46349 7.52679 7.90440 8.21980 8.40847 8.88249 9.07997 9.54321 11.02376 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.028049 B = 0.002366 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.016633 B =11830.121639 C =12098.084861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.603 5.603 3 C 0.245 3.755 4 C -0.527 4.527 5 H 0.056 0.944 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C 0.504 3.496 13 O -0.546 6.546 14 C -0.133 4.133 15 C 0.065 3.935 16 N -0.526 5.526 17 C 0.040 3.960 18 C -0.137 4.137 19 C 0.139 3.861 20 H 0.110 0.890 21 N -0.360 5.360 22 C 0.058 3.942 23 C -0.278 4.278 24 C 0.042 3.958 25 N -0.298 5.298 26 C 0.036 3.964 27 H 0.044 0.956 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.032 0.968 31 H 0.043 0.957 32 H 0.264 0.736 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.048 0.952 37 H 0.092 0.908 38 H 0.058 0.942 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.173 0.827 42 H 0.146 0.854 43 H 0.182 0.818 44 H 0.070 0.930 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.697 -24.390 1.168 26.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.335 5.335 3 C 0.125 3.875 4 C -0.565 4.565 5 H 0.074 0.926 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.290 3.710 13 O -0.424 6.424 14 C -0.173 4.173 15 C -0.063 4.063 16 N -0.250 5.250 17 C -0.088 4.088 18 C -0.176 4.176 19 C 0.035 3.965 20 H 0.128 0.872 21 N -0.142 5.142 22 C -0.088 4.088 23 C -0.307 4.307 24 C -0.144 4.144 25 N -0.118 5.118 26 C -0.093 4.093 27 H 0.063 0.937 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.103 0.897 34 H 0.112 0.888 35 H 0.103 0.897 36 H 0.067 0.933 37 H 0.110 0.890 38 H 0.076 0.924 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.190 0.810 42 H 0.164 0.836 43 H 0.199 0.801 44 H 0.089 0.911 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.344 -23.295 1.124 24.770 hybrid contribution -0.037 -0.085 -1.282 1.285 sum -8.380 -23.380 -0.158 24.837 Atomic orbital electron populations 1.21633 0.81419 1.02512 1.00444 1.48165 1.06207 1.07889 1.71264 1.19282 0.92568 0.78145 0.97456 1.21382 1.36612 1.06283 0.92262 0.92607 1.24948 0.95368 0.96409 0.97443 1.69924 1.38291 1.14356 1.30783 0.86556 0.78345 0.77841 0.84653 1.20254 1.21136 1.20216 1.20291 0.88067 0.85184 0.77487 1.90669 1.14002 1.87367 1.50363 1.21589 0.99159 0.92559 1.04029 1.22090 0.94636 0.86790 1.02756 1.63634 1.27867 1.01901 1.31606 1.23101 1.01013 0.93882 0.90763 1.23145 0.95169 0.97042 1.02229 1.22593 1.00028 0.76523 0.97325 0.87244 1.48657 1.06040 1.10414 1.49094 1.22505 0.94534 0.92697 0.99078 1.21509 0.95789 0.98496 1.14937 1.23905 0.95666 0.96119 0.98700 1.77408 1.08321 1.02421 1.23674 1.23214 0.97179 0.91197 0.97731 0.93710 0.90852 0.92438 0.95024 0.93864 0.92641 0.89664 0.88801 0.89748 0.93339 0.89020 0.92377 0.89434 0.89505 0.81020 0.83577 0.80120 0.91111 0.89709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.30 10.24 59.84 0.61 1.91 16 2 N -0.60 -12.69 2.86 -182.96 -0.52 -13.21 16 3 C 0.24 6.43 5.16 -5.19 -0.03 6.40 16 4 C -0.53 -14.95 9.39 -34.44 -0.32 -15.27 16 5 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 8 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 C 0.50 10.23 7.67 -10.98 -0.08 10.15 16 13 O -0.55 -13.56 15.56 5.56 0.09 -13.47 16 14 C -0.13 -1.86 4.30 -27.88 -0.12 -1.98 16 15 C 0.07 0.87 3.85 -3.82 -0.01 0.86 16 16 N -0.53 -5.55 5.16 -231.26 -1.19 -6.74 16 17 C 0.04 0.34 5.78 -2.30 -0.01 0.33 16 18 C -0.14 -0.96 6.42 -24.59 -0.16 -1.12 16 19 C 0.14 1.27 4.09 -66.11 -0.27 1.00 16 20 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 21 N -0.36 -3.65 3.57 -53.10 -0.19 -3.84 16 22 C 0.06 0.48 10.58 -17.23 -0.18 0.30 16 23 C -0.28 -2.27 10.80 -40.01 -0.43 -2.71 16 24 C 0.04 0.39 12.03 -17.37 -0.21 0.18 16 25 N -0.30 -3.53 12.58 30.62 0.39 -3.14 16 26 C 0.04 0.37 6.62 -2.83 -0.02 0.35 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.07 1.17 8.07 -51.93 -0.42 0.76 16 29 H 0.06 0.71 6.44 -51.93 -0.33 0.37 16 30 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 31 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 32 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.09 1.05 6.75 -51.93 -0.35 0.70 16 34 H 0.09 1.17 8.11 -51.93 -0.42 0.75 16 35 H 0.08 1.24 7.99 -51.93 -0.41 0.82 16 36 H 0.05 0.72 7.81 -51.93 -0.41 0.31 16 37 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.53 7.62 -51.93 -0.40 0.13 16 39 H 0.09 0.53 6.26 -51.93 -0.33 0.20 16 40 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.17 0.95 6.80 -52.48 -0.36 0.59 16 42 H 0.15 0.85 8.06 -52.48 -0.42 0.43 16 43 H 0.18 1.12 8.06 -52.49 -0.42 0.70 16 44 H 0.07 0.78 7.55 -51.93 -0.39 0.39 16 45 H 0.08 0.90 8.03 -51.93 -0.42 0.48 16 LS Contribution 367.97 15.07 5.55 5.55 Total: -1.00 -34.84 367.97 -8.63 -43.47 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -7.12 Total: -1.52 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -1.34 Total: 2.03 kcal Atomic # 7 Polarization: -52.09 SS G_CDS: -0.78 Total: -52.88 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: 0.09 Total: -13.47 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.84 -8.63 -43.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292044610.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.250 kcal (2) G-P(sol) polarization free energy of solvation -34.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds