Wall clock time and date at job start Fri Apr 10 2020 17:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46970 * 2 1 4 4 C 1.50694 * 109.47159 * 239.99443 * 2 1 3 5 5 O 1.21287 * 119.99606 * 240.00451 * 4 2 1 6 6 N 1.34776 * 120.00215 * 60.00192 * 4 2 1 7 7 C 1.46504 * 120.00041 * 180.02562 * 6 4 2 8 8 C 1.52994 * 109.46900 * 180.02562 * 7 6 4 9 9 C 1.53043 * 109.45818 * 295.02352 * 8 7 6 10 10 C 1.53200 * 109.30999 * 178.60552 * 9 8 7 11 11 N 1.46919 * 108.76585 * 54.65668 * 10 9 8 12 12 C 1.36937 * 120.63465 * 126.36306 * 11 10 9 13 13 H 1.08003 * 119.99688 * 331.86472 * 12 11 10 14 14 C 1.38807 * 120.00119 * 151.85944 * 12 11 10 15 15 N 1.31617 * 120.00728 * 343.06118 * 14 12 11 16 16 Si 1.86811 * 119.99812 * 163.06496 * 14 12 11 17 17 H 1.48497 * 109.46922 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.46997 * 119.99750 * 16 14 12 19 19 H 1.48500 * 109.47023 * 239.99838 * 16 14 12 20 20 C 1.46933 * 118.73993 * 306.38149 * 11 10 9 21 21 C 1.53043 * 109.45900 * 174.97023 * 8 7 6 22 22 N 1.46502 * 109.46681 * 119.99126 * 2 1 3 23 23 C 1.34947 * 126.03556 * 35.00611 * 22 2 1 24 24 C 1.35322 * 107.74494 * 179.97438 * 23 22 2 25 25 C 1.39867 * 107.91681 * 359.97438 * 24 23 22 26 26 N 1.30834 * 108.20477 * 359.73702 * 25 24 23 27 27 H 1.08997 * 109.47160 * 300.00980 * 1 2 3 28 28 H 1.09006 * 109.46830 * 60.00479 * 1 2 3 29 29 H 1.08998 * 109.47616 * 180.02562 * 1 2 3 30 30 H 0.96996 * 119.99932 * 359.97438 * 6 4 2 31 31 H 1.09000 * 109.46560 * 299.99635 * 7 6 4 32 32 H 1.08998 * 109.47217 * 59.99499 * 7 6 4 33 33 H 1.09003 * 109.46419 * 54.99783 * 8 7 6 34 34 H 1.09004 * 109.49570 * 298.56573 * 9 8 7 35 35 H 1.08993 * 109.49682 * 58.66703 * 9 8 7 36 36 H 1.08993 * 109.59560 * 294.86602 * 10 9 8 37 37 H 1.08999 * 109.70135 * 174.50499 * 10 9 8 38 38 H 0.96997 * 120.00799 * 180.02562 * 15 14 12 39 39 H 1.09001 * 109.58295 * 293.82675 * 20 11 10 40 40 H 1.08994 * 109.70633 * 173.46919 * 20 11 10 41 41 H 1.08998 * 109.49745 * 301.33746 * 21 8 7 42 42 H 1.09005 * 109.49562 * 61.40074 * 21 8 7 43 43 H 1.07995 * 126.12837 * 359.97438 * 23 22 2 44 44 H 1.07998 * 126.04152 * 179.97438 * 24 23 22 45 45 H 1.08005 * 125.89611 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 2.7296 -1.6967 -1.1189 6 7 1.7068 -0.2502 -2.4545 7 6 2.1947 -0.9413 -3.6506 8 6 1.6854 -0.2197 -4.8999 9 6 0.1600 -0.3262 -4.9638 10 6 -0.3491 0.4270 -6.1970 11 7 0.3420 -0.0907 -7.3856 12 6 -0.3693 -0.5390 -8.4664 13 1 -1.3613 -0.9438 -8.3298 14 6 0.1844 -0.4732 -9.7376 15 7 1.2228 0.3032 -9.9638 16 14 -0.5443 -1.4867 -11.1274 17 1 -1.6972 -2.2708 -10.6164 18 1 -1.0023 -0.5820 -12.2123 19 1 0.4877 -2.4133 -11.6582 20 6 1.8111 -0.1185 -7.3926 21 6 2.2960 -0.8651 -6.1460 22 7 2.0183 -0.6905 1.1963 23 6 1.4401 -1.7557 1.7897 24 6 2.1966 -2.0926 2.8599 25 6 3.2742 -1.2032 2.9223 26 7 3.1716 -0.3660 1.9221 27 1 -0.3633 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 1.1489 0.5382 -2.5436 31 1 3.2847 -0.9416 -3.6507 32 1 1.8311 -1.9688 -3.6503 33 1 1.9747 0.8304 -4.8561 34 1 -0.1288 -1.3749 -5.0329 35 1 -0.2732 0.1127 -4.0652 36 1 -0.1404 1.4911 -6.0874 37 1 -1.4231 0.2743 -6.3033 38 1 1.6095 0.3495 -10.8521 39 1 2.1959 0.9013 -7.3805 40 1 2.1647 -0.6319 -8.2867 41 1 3.3831 -0.8100 -6.0887 42 1 1.9871 -1.9090 -6.2034 43 1 0.5357 -2.2506 1.4680 44 1 2.0025 -2.9048 3.5448 45 1 4.0584 -1.2095 3.6650 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330922705.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:56:36 Heat of formation + Delta-G solvation = 59.075345 kcal Electronic energy + Delta-G solvation = -25076.844676 eV Core-core repulsion = 21517.579636 eV Total energy + Delta-G solvation = -3559.265040 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.49090 -39.82092 -37.90882 -35.09481 -34.88183 -32.90420 -30.91886 -30.26763 -29.90064 -29.57113 -27.04248 -25.15931 -23.94280 -22.38084 -21.67862 -21.22232 -21.03794 -20.06943 -19.15533 -17.91496 -17.35211 -16.75717 -15.82070 -15.64734 -14.96283 -14.79711 -14.58537 -14.20100 -13.95694 -13.78378 -13.60476 -13.48896 -13.26118 -13.07761 -12.88484 -12.72636 -12.41589 -12.37654 -12.11760 -11.86701 -11.40032 -11.03434 -10.86028 -10.77211 -10.57077 -10.34337 -10.27473 -10.22475 -9.96431 -9.63525 -9.58246 -9.45404 -9.15291 -8.74636 -8.51037 -6.71341 -5.82811 -3.25532 1.66472 2.13338 2.34987 2.72865 3.06398 3.34385 3.42637 3.44472 4.08832 4.32218 4.44738 4.46333 4.61329 4.76860 4.97461 5.02942 5.12665 5.14953 5.29954 5.34980 5.36863 5.45930 5.54020 5.62412 5.77581 5.84907 5.85197 5.95631 6.05263 6.25412 6.28230 6.37211 6.47156 6.54049 6.61940 6.69617 6.74190 6.76419 6.91292 7.27978 7.33946 7.53841 7.61717 7.76162 7.97634 8.41379 9.17576 9.81028 10.37386 11.25729 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.040024 B = 0.002434 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.405004 B =11501.019321 C =11664.812531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.142 3.858 3 H 0.128 0.872 4 C 0.497 3.503 5 O -0.524 6.524 6 N -0.718 5.718 7 C 0.124 3.876 8 C -0.090 4.090 9 C -0.127 4.127 10 C 0.145 3.855 11 N -0.592 5.592 12 C -0.252 4.252 13 H 0.065 0.935 14 C 0.002 3.998 15 N -0.903 5.903 16 Si 0.901 3.099 17 H -0.278 1.278 18 H -0.290 1.290 19 H -0.289 1.289 20 C 0.172 3.828 21 C -0.133 4.133 22 N -0.354 5.354 23 C 0.069 3.931 24 C -0.276 4.276 25 C 0.046 3.954 26 N -0.292 5.292 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.401 0.599 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.046 0.954 36 H 0.016 0.984 37 H 0.053 0.947 38 H 0.253 0.747 39 H 0.018 0.982 40 H 0.088 0.912 41 H 0.051 0.949 42 H 0.057 0.943 43 H 0.170 0.830 44 H 0.147 0.853 45 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.177 -0.160 22.490 22.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.036 3.964 3 H 0.145 0.855 4 C 0.280 3.720 5 O -0.399 6.399 6 N -0.370 5.370 7 C 0.001 3.999 8 C -0.109 4.109 9 C -0.166 4.166 10 C 0.019 3.981 11 N -0.315 5.315 12 C -0.382 4.382 13 H 0.083 0.917 14 C -0.197 4.197 15 N -0.547 5.547 16 Si 0.731 3.269 17 H -0.203 1.203 18 H -0.217 1.217 19 H -0.215 1.215 20 C 0.046 3.954 21 C -0.173 4.173 22 N -0.136 5.136 23 C -0.077 4.077 24 C -0.305 4.305 25 C -0.141 4.141 26 N -0.113 5.113 27 H 0.099 0.901 28 H 0.110 0.890 29 H 0.092 0.908 30 H 0.236 0.764 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.034 0.966 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.036 0.964 40 H 0.106 0.894 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.187 0.813 44 H 0.164 0.836 45 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -0.123 0.214 21.669 21.671 hybrid contribution -0.853 -0.872 -0.466 1.305 sum -0.975 -0.658 21.204 21.236 Atomic orbital electron populations 1.22169 0.90420 1.04480 1.04866 1.21114 0.96191 0.97745 0.81391 0.85458 1.20682 0.81198 0.85307 0.84785 1.90772 1.36913 1.25814 1.86448 1.46043 1.53410 1.32139 1.05437 1.21634 0.98942 0.96456 0.82872 1.21323 0.96594 0.99633 0.93348 1.22080 0.94336 1.01557 0.98618 1.20885 0.95943 0.94415 0.86898 1.44054 1.01319 1.72459 1.13688 1.19212 1.00437 1.33579 0.84970 0.91706 1.25050 0.98830 0.98553 0.97235 1.70030 1.25635 1.37933 1.21118 0.86243 0.78514 0.79881 0.82250 1.20264 1.21716 1.21526 1.20761 0.83377 0.96665 0.94626 1.22181 0.98422 1.00575 0.96092 1.48190 1.19402 1.24612 1.21428 1.22420 0.99903 0.90601 0.94793 1.21461 0.99388 1.06272 1.03411 1.23866 0.99113 0.94105 0.96985 1.77350 1.01838 1.24719 1.07358 0.90077 0.89037 0.90781 0.76363 0.91682 0.91466 0.91213 0.92140 0.93558 0.96608 0.92856 0.93650 0.96420 0.89371 0.93042 0.92374 0.81325 0.83551 0.80059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.92 8.73 37.16 0.32 -0.60 16 2 C 0.14 1.32 3.73 -69.08 -0.26 1.06 16 3 H 0.13 1.01 8.14 -51.93 -0.42 0.58 16 4 C 0.50 6.16 7.22 -10.99 -0.08 6.08 16 5 O -0.52 -9.00 16.42 5.55 0.09 -8.91 16 6 N -0.72 -7.81 5.16 -60.30 -0.31 -8.12 16 7 C 0.12 1.66 5.06 -4.04 -0.02 1.64 16 8 C -0.09 -1.33 2.19 -90.58 -0.20 -1.53 16 9 C -0.13 -1.92 5.25 -26.61 -0.14 -2.06 16 10 C 0.15 2.81 6.52 -3.71 -0.02 2.79 16 11 N -0.59 -14.26 2.99 -172.32 -0.52 -14.77 16 12 C -0.25 -6.76 9.58 -15.06 -0.14 -6.91 16 13 H 0.07 1.71 7.89 -52.48 -0.41 1.30 16 14 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 15 N -0.90 -25.80 11.19 55.49 0.62 -25.18 16 16 Si 0.90 21.38 29.59 -169.99 -5.03 16.36 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 20 C 0.17 3.93 5.30 -3.71 -0.02 3.91 16 21 C -0.13 -2.38 5.36 -26.61 -0.14 -2.52 16 22 N -0.35 -4.11 3.02 -55.99 -0.17 -4.28 16 23 C 0.07 0.70 10.57 -17.22 -0.18 0.52 16 24 C -0.28 -2.72 10.80 -40.01 -0.43 -3.15 16 25 C 0.05 0.49 12.02 -17.37 -0.21 0.28 16 26 N -0.29 -3.87 12.58 30.62 0.39 -3.48 16 27 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.09 0.38 7.56 -51.93 -0.39 -0.02 16 29 H 0.07 0.44 7.16 -51.93 -0.37 0.06 16 30 H 0.40 3.28 7.06 -40.82 -0.29 3.00 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.05 0.55 7.15 -51.93 -0.37 0.18 16 36 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.05 1.02 7.93 -51.93 -0.41 0.61 16 38 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.09 2.30 6.06 -51.93 -0.31 1.98 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.17 1.24 7.26 -52.49 -0.38 0.86 16 44 H 0.15 1.07 8.06 -52.49 -0.42 0.64 16 45 H 0.18 1.33 8.06 -52.48 -0.42 0.91 16 LS Contribution 363.46 15.07 5.48 5.48 Total: -1.00 -34.34 363.46 -8.22 -42.56 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -7.15 Total: 0.87 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -1.61 Total: -0.53 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: 0.01 Total: -55.83 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.09 Total: -8.91 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.34 -8.22 -42.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330922705.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.632 kcal (2) G-P(sol) polarization free energy of solvation -34.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds