Wall clock time and date at job start Fri Apr 10 2020 17:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46970 * 2 1 4 4 C 1.50694 * 109.47159 * 239.99443 * 2 1 3 5 5 O 1.21287 * 119.99606 * 240.00451 * 4 2 1 6 6 N 1.34776 * 120.00215 * 60.00192 * 4 2 1 7 7 C 1.46504 * 120.00041 * 180.02562 * 6 4 2 8 8 C 1.52994 * 109.46900 * 180.02562 * 7 6 4 9 9 C 1.53043 * 109.45818 * 295.02352 * 8 7 6 10 10 C 1.53200 * 109.30999 * 178.60552 * 9 8 7 11 11 N 1.46919 * 108.76585 * 54.65668 * 10 9 8 12 12 C 1.36937 * 120.63465 * 126.36306 * 11 10 9 13 13 H 1.08003 * 119.99688 * 331.86472 * 12 11 10 14 14 C 1.38807 * 120.00119 * 151.85944 * 12 11 10 15 15 N 1.31617 * 120.00728 * 343.06118 * 14 12 11 16 16 Si 1.86811 * 119.99812 * 163.06496 * 14 12 11 17 17 H 1.48497 * 109.46922 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.46997 * 119.99750 * 16 14 12 19 19 H 1.48500 * 109.47023 * 239.99838 * 16 14 12 20 20 C 1.46933 * 118.73993 * 306.38149 * 11 10 9 21 21 C 1.53043 * 109.45900 * 174.97023 * 8 7 6 22 22 N 1.46502 * 109.46681 * 119.99126 * 2 1 3 23 23 C 1.34947 * 126.03556 * 35.00611 * 22 2 1 24 24 C 1.35322 * 107.74494 * 179.97438 * 23 22 2 25 25 C 1.39867 * 107.91681 * 359.97438 * 24 23 22 26 26 N 1.30834 * 108.20477 * 359.73702 * 25 24 23 27 27 H 1.08997 * 109.47160 * 300.00980 * 1 2 3 28 28 H 1.09006 * 109.46830 * 60.00479 * 1 2 3 29 29 H 1.08998 * 109.47616 * 180.02562 * 1 2 3 30 30 H 0.96996 * 119.99932 * 359.97438 * 6 4 2 31 31 H 1.09000 * 109.46560 * 299.99635 * 7 6 4 32 32 H 1.08998 * 109.47217 * 59.99499 * 7 6 4 33 33 H 1.09003 * 109.46419 * 54.99783 * 8 7 6 34 34 H 1.09004 * 109.49570 * 298.56573 * 9 8 7 35 35 H 1.08993 * 109.49682 * 58.66703 * 9 8 7 36 36 H 1.08993 * 109.59560 * 294.86602 * 10 9 8 37 37 H 1.08999 * 109.70135 * 174.50499 * 10 9 8 38 38 H 0.96997 * 120.00799 * 180.02562 * 15 14 12 39 39 H 1.09001 * 109.58295 * 293.82675 * 20 11 10 40 40 H 1.08994 * 109.70633 * 173.46919 * 20 11 10 41 41 H 1.08998 * 109.49745 * 301.33746 * 21 8 7 42 42 H 1.09005 * 109.49562 * 61.40074 * 21 8 7 43 43 H 1.07995 * 126.12837 * 359.97438 * 23 22 2 44 44 H 1.07998 * 126.04152 * 179.97438 * 24 23 22 45 45 H 1.08005 * 125.89611 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 2.7296 -1.6967 -1.1189 6 7 1.7068 -0.2502 -2.4545 7 6 2.1947 -0.9413 -3.6506 8 6 1.6854 -0.2197 -4.8999 9 6 0.1600 -0.3262 -4.9638 10 6 -0.3491 0.4270 -6.1970 11 7 0.3420 -0.0907 -7.3856 12 6 -0.3693 -0.5390 -8.4664 13 1 -1.3613 -0.9438 -8.3298 14 6 0.1844 -0.4732 -9.7376 15 7 1.2228 0.3032 -9.9638 16 14 -0.5443 -1.4867 -11.1274 17 1 -1.6972 -2.2708 -10.6164 18 1 -1.0023 -0.5820 -12.2123 19 1 0.4877 -2.4133 -11.6582 20 6 1.8111 -0.1185 -7.3926 21 6 2.2960 -0.8651 -6.1460 22 7 2.0183 -0.6905 1.1963 23 6 1.4401 -1.7557 1.7897 24 6 2.1966 -2.0926 2.8599 25 6 3.2742 -1.2032 2.9223 26 7 3.1716 -0.3660 1.9221 27 1 -0.3633 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 1.1489 0.5382 -2.5436 31 1 3.2847 -0.9416 -3.6507 32 1 1.8311 -1.9688 -3.6503 33 1 1.9747 0.8304 -4.8561 34 1 -0.1288 -1.3749 -5.0329 35 1 -0.2732 0.1127 -4.0652 36 1 -0.1404 1.4911 -6.0874 37 1 -1.4231 0.2743 -6.3033 38 1 1.6095 0.3495 -10.8521 39 1 2.1959 0.9013 -7.3805 40 1 2.1647 -0.6319 -8.2867 41 1 3.3831 -0.8100 -6.0887 42 1 1.9871 -1.9090 -6.2034 43 1 0.5357 -2.2506 1.4680 44 1 2.0025 -2.9048 3.5448 45 1 4.0584 -1.2095 3.6650 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330922705.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:56:35 Heat of formation + Delta-G solvation = 36.159536 kcal Electronic energy + Delta-G solvation = -25077.838380 eV Core-core repulsion = 21517.579636 eV Total energy + Delta-G solvation = -3560.258744 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.25998 -40.81647 -39.35837 -36.47936 -35.64961 -34.45811 -32.55508 -31.43909 -31.02041 -30.40069 -28.44960 -26.23965 -25.29664 -23.85288 -22.93250 -22.24208 -21.97228 -21.04578 -20.54703 -18.87699 -18.56974 -18.10774 -16.91595 -16.78920 -16.48492 -15.80554 -15.70276 -15.40353 -15.30002 -15.08981 -14.82724 -14.57455 -14.43797 -14.02720 -13.94497 -13.72042 -13.51883 -13.38696 -13.23958 -13.01595 -12.83531 -12.60634 -12.58514 -12.24622 -11.99680 -11.84816 -11.64357 -11.63234 -11.33814 -11.12646 -11.08591 -10.54709 -10.35364 -10.18712 -9.50935 -8.66546 -7.87507 -5.32228 0.88758 1.40275 1.44741 1.46425 1.47493 1.57129 1.98844 2.17796 2.50922 3.27242 3.42683 3.62816 3.71394 3.81867 3.82551 3.93281 3.99445 4.07166 4.15364 4.49299 4.54449 4.59053 4.64087 4.68502 4.71794 4.73778 4.79158 4.89187 4.93297 5.02913 5.10393 5.13587 5.16690 5.27351 5.28666 5.33432 5.43595 5.55992 5.66421 5.75108 5.78842 6.05992 6.40153 6.43650 6.77066 7.08474 7.15968 7.88810 8.38894 9.18713 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.040024 B = 0.002434 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.405004 B =11501.019321 C =11664.812531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.143 3.857 3 H 0.141 0.859 4 C 0.498 3.502 5 O -0.577 6.577 6 N -0.703 5.703 7 C 0.138 3.862 8 C -0.077 4.077 9 C -0.113 4.113 10 C 0.138 3.862 11 N -0.613 5.613 12 C -0.258 4.258 13 H 0.066 0.934 14 C -0.053 4.053 15 N -0.935 5.935 16 Si 0.963 3.037 17 H -0.266 1.266 18 H -0.292 1.292 19 H -0.292 1.292 20 C 0.177 3.823 21 C -0.123 4.123 22 N -0.365 5.365 23 C 0.060 3.940 24 C -0.285 4.285 25 C 0.038 3.962 26 N -0.338 5.338 27 H 0.093 0.907 28 H 0.113 0.887 29 H 0.074 0.926 30 H 0.418 0.582 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.051 0.949 35 H 0.092 0.908 36 H 0.019 0.981 37 H 0.053 0.947 38 H 0.249 0.751 39 H -0.002 1.002 40 H 0.049 0.951 41 H 0.065 0.935 42 H 0.049 0.951 43 H 0.194 0.806 44 H 0.169 0.831 45 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.711 -0.196 24.541 24.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.037 3.963 3 H 0.158 0.842 4 C 0.284 3.716 5 O -0.456 6.456 6 N -0.356 5.356 7 C 0.014 3.986 8 C -0.096 4.096 9 C -0.152 4.152 10 C 0.013 3.987 11 N -0.336 5.336 12 C -0.389 4.389 13 H 0.084 0.916 14 C -0.248 4.248 15 N -0.582 5.582 16 Si 0.791 3.209 17 H -0.191 1.191 18 H -0.219 1.219 19 H -0.219 1.219 20 C 0.052 3.948 21 C -0.163 4.163 22 N -0.147 5.147 23 C -0.086 4.086 24 C -0.314 4.314 25 C -0.148 4.148 26 N -0.159 5.159 27 H 0.112 0.888 28 H 0.132 0.868 29 H 0.093 0.907 30 H 0.256 0.744 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.069 0.931 35 H 0.110 0.890 36 H 0.037 0.963 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.016 0.984 40 H 0.068 0.932 41 H 0.083 0.917 42 H 0.068 0.932 43 H 0.211 0.789 44 H 0.186 0.814 45 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -1.698 0.209 23.751 23.812 hybrid contribution -0.382 -0.840 -1.067 1.411 sum -2.079 -0.630 22.683 22.787 Atomic orbital electron populations 1.22227 0.87379 1.05070 1.06603 1.21337 0.98335 0.97447 0.79186 0.84158 1.21264 0.80077 0.84564 0.85741 1.90752 1.39316 1.28306 1.87200 1.45841 1.53110 1.32272 1.04397 1.21270 0.98357 0.95940 0.83043 1.21149 0.96274 0.99874 0.92344 1.21937 0.94331 1.00656 0.98273 1.21101 0.95805 0.94991 0.86767 1.44344 1.01787 1.73019 1.14490 1.19535 1.00535 1.32821 0.85994 0.91633 1.25773 0.99636 0.99872 0.99523 1.70174 1.27166 1.39639 1.21209 0.85272 0.77899 0.78310 0.79375 1.19066 1.21946 1.21916 1.20547 0.83239 0.95627 0.95434 1.21980 0.99418 0.99491 0.95387 1.48423 1.19191 1.25256 1.21875 1.22963 1.00658 0.90238 0.94704 1.21853 0.99023 1.06678 1.03864 1.24403 0.99862 0.93661 0.96837 1.77270 1.03377 1.26492 1.08785 0.88788 0.86829 0.90745 0.74368 0.92574 0.92379 0.90307 0.93066 0.88999 0.96281 0.92857 0.94203 0.98350 0.93247 0.91660 0.93186 0.78891 0.81355 0.77751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 8.73 71.98 0.63 -0.57 16 2 C 0.14 2.30 3.73 44.24 0.17 2.46 16 3 H 0.14 1.86 8.14 -2.39 -0.02 1.84 16 4 C 0.50 11.32 7.22 87.66 0.63 11.96 16 5 O -0.58 -19.32 16.42 -3.05 -0.05 -19.37 16 6 N -0.70 -13.18 5.16 -463.06 -2.39 -15.57 16 7 C 0.14 3.39 5.06 86.38 0.44 3.83 16 8 C -0.08 -2.12 2.19 -10.77 -0.02 -2.14 16 9 C -0.11 -3.09 5.25 30.68 0.16 -2.93 16 10 C 0.14 5.14 6.52 86.37 0.56 5.70 16 11 N -0.61 -29.55 2.99 -699.10 -2.09 -31.65 16 12 C -0.26 -13.94 9.58 84.03 0.81 -13.14 16 13 H 0.07 3.45 7.89 -2.91 -0.02 3.43 16 14 C -0.05 -2.93 4.92 84.86 0.42 -2.51 16 15 N -0.94 -55.05 11.19 21.65 0.24 -54.80 16 16 Si 0.96 44.61 29.59 68.60 2.03 46.64 16 17 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 18 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 19 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 20 C 0.18 8.29 5.30 86.36 0.46 8.74 16 21 C -0.12 -4.35 5.36 30.67 0.16 -4.19 16 22 N -0.37 -7.90 3.02 -331.06 -1.00 -8.90 16 23 C 0.06 1.11 10.57 83.54 0.88 1.99 16 24 C -0.29 -5.13 10.80 21.99 0.24 -4.90 16 25 C 0.04 0.78 12.02 85.24 1.02 1.81 16 26 N -0.34 -8.69 12.58 -57.02 -0.72 -9.40 16 27 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.11 0.38 7.56 -2.38 -0.02 0.36 16 29 H 0.07 0.61 7.16 -2.39 -0.02 0.59 16 30 H 0.42 5.04 7.06 -92.71 -0.66 4.38 16 31 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.09 1.71 7.15 -2.39 -0.02 1.69 16 36 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.05 1.95 7.93 -2.39 -0.02 1.93 16 38 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 39 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 40 H 0.05 2.68 6.06 -2.39 -0.01 2.66 16 41 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.05 1.84 8.14 -2.38 -0.02 1.83 16 43 H 0.19 2.34 7.26 -2.91 -0.02 2.32 16 44 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 45 H 0.21 2.76 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -77.45 363.46 2.90 -74.55 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 0.32 Total: 12.40 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 6.56 Total: 6.12 kcal Atomic # 7 Polarization: -114.37 SS G_CDS: -5.96 Total: -120.33 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.05 Total: -19.37 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -77.45 2.90 -74.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330922705.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.709 kcal (2) G-P(sol) polarization free energy of solvation -77.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds