Wall clock time and date at job start Fri Apr 10 2020 17:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34780 * 119.99660 * 2 1 4 4 O 1.21689 * 119.99582 * 180.02562 * 3 2 1 5 5 C 1.46367 * 120.00073 * 0.02562 * 3 2 1 6 6 H 1.08003 * 120.00164 * 359.97438 * 5 3 2 7 7 C 1.40053 * 120.00078 * 179.97438 * 5 3 2 8 8 N 1.30673 * 119.99779 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99991 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47134 * 60.00285 * 9 7 5 11 11 H 1.48503 * 109.46789 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47211 * 300.00235 * 9 7 5 13 13 C 1.46504 * 120.00301 * 180.02562 * 2 1 3 14 14 C 1.53114 * 109.52257 * 59.99674 * 13 2 1 15 15 C 1.53044 * 109.27470 * 182.38099 * 14 13 2 16 16 N 1.46841 * 109.52349 * 59.18050 * 15 14 13 17 17 C 1.46905 * 110.99785 * 174.16158 * 16 15 14 18 18 C 1.53000 * 109.47021 * 169.99588 * 17 16 15 19 19 N 1.46503 * 109.47420 * 179.97438 * 18 17 16 20 20 C 1.34940 * 126.03757 * 124.99460 * 19 18 17 21 21 C 1.35317 * 107.74438 * 179.77616 * 20 19 18 22 22 C 1.39872 * 107.92021 * 0.23195 * 21 20 19 23 23 N 1.30838 * 108.20312 * 359.97438 * 22 21 20 24 24 C 1.46852 * 111.19885 * 298.25323 * 16 15 14 25 25 C 1.53034 * 109.51772 * 61.74469 * 24 16 15 26 26 H 1.09000 * 109.47340 * 269.99399 * 1 2 3 27 27 H 1.09000 * 109.47283 * 29.99736 * 1 2 3 28 28 H 1.09001 * 109.47090 * 150.00003 * 1 2 3 29 29 H 0.96998 * 120.00011 * 179.97438 * 8 7 5 30 30 H 1.08996 * 109.52182 * 180.12712 * 13 2 1 31 31 H 1.08993 * 109.50691 * 62.43894 * 14 13 2 32 32 H 1.09003 * 109.53676 * 302.33337 * 14 13 2 33 33 H 1.08998 * 109.46016 * 299.15887 * 15 14 13 34 34 H 1.09006 * 109.44848 * 179.19030 * 15 14 13 35 35 H 1.08996 * 109.47213 * 49.99691 * 17 16 15 36 36 H 1.09000 * 109.47223 * 289.99542 * 17 16 15 37 37 H 1.09005 * 109.47317 * 60.00027 * 18 17 16 38 38 H 1.08999 * 109.47532 * 300.00329 * 18 17 16 39 39 H 1.08002 * 126.13053 * 0.04913 * 20 19 18 40 40 H 1.08003 * 126.04109 * 180.21059 * 21 20 19 41 41 H 1.08001 * 125.89461 * 180.02562 * 22 21 20 42 42 H 1.09001 * 109.46481 * 181.76038 * 24 16 15 43 43 H 1.09003 * 109.46379 * 301.73068 * 24 16 15 44 44 H 1.09000 * 109.50126 * 180.87782 * 25 24 16 45 45 H 1.09003 * 109.50875 * 60.76729 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3557 1.1673 -0.0005 5 6 1.4069 2.4348 0.0006 6 1 0.3269 2.4348 0.0006 7 6 2.1071 3.6478 0.0011 8 7 3.4138 3.6478 0.0006 9 14 1.1730 5.2654 0.0026 10 1 0.3198 5.3432 1.2154 11 1 2.1380 6.3942 0.0023 12 1 0.3188 5.3448 -1.2095 13 6 2.1976 -1.2687 -0.0006 14 6 1.8285 -2.0721 -1.2507 15 6 2.5509 -3.4209 -1.2159 16 7 2.1596 -4.1561 -0.0065 17 6 2.7258 -5.5117 -0.0082 18 6 2.5109 -6.1558 1.3628 19 7 3.0749 -7.5079 1.3610 20 6 3.9868 -7.9889 2.2317 21 6 4.2417 -9.2742 1.8938 22 6 3.4628 -9.5878 0.7752 23 7 2.7648 -8.5290 0.4533 24 6 2.5465 -3.4258 1.2074 25 6 1.8240 -2.0773 1.2449 26 1 -0.3634 -0.0001 1.0277 27 1 -0.3634 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 3.8988 4.4878 0.0006 30 1 3.2693 -1.0705 0.0018 31 1 2.1310 -1.5202 -2.1405 32 1 0.7512 -2.2368 -1.2732 33 1 3.6282 -3.2557 -1.2080 34 1 2.2788 -4.0012 -2.0977 35 1 3.7933 -5.4593 -0.2217 36 1 2.2313 -6.1110 -0.7727 37 1 1.4432 -6.2083 1.5764 38 1 3.0052 -5.5566 2.1274 39 1 4.4301 -7.4467 3.0538 40 1 4.9261 -9.9401 2.3985 41 1 3.4407 -10.5398 0.2657 42 1 2.2716 -4.0098 2.0858 43 1 3.6240 -3.2606 1.2040 44 1 2.1233 -1.5289 2.1381 45 1 0.7467 -2.2419 1.2624 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331059965.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:56:44 Heat of formation + Delta-G solvation = 56.307712 kcal Electronic energy + Delta-G solvation = -25067.726815 eV Core-core repulsion = 21508.341761 eV Total energy + Delta-G solvation = -3559.385054 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.34310 -39.38600 -37.44724 -35.02329 -33.51459 -32.45978 -31.42675 -30.77038 -30.27048 -28.06627 -26.26656 -25.73286 -24.20979 -22.94732 -22.07129 -21.28354 -20.51515 -19.79157 -18.76305 -17.55773 -16.46697 -16.10517 -15.71062 -15.43614 -15.03973 -14.88143 -14.49396 -14.23572 -13.98470 -13.93145 -13.89339 -13.23808 -13.00955 -12.92741 -12.75728 -12.39097 -12.11249 -11.79400 -11.59423 -11.54512 -11.47983 -11.30218 -11.02904 -10.86855 -10.82540 -10.80669 -10.30982 -10.20364 -10.15258 -9.91233 -9.65402 -8.86147 -8.83368 -8.41569 -7.59047 -7.19567 -6.20492 -4.65883 1.67784 2.24013 2.63219 3.14058 3.19177 3.20769 3.78968 4.06912 4.22898 4.51184 4.53608 4.58790 4.61655 4.79140 4.96590 5.02362 5.14413 5.23464 5.29329 5.39887 5.49319 5.55617 5.56674 5.70178 5.74488 5.77274 5.78019 5.82914 5.93051 6.02469 6.08829 6.22230 6.32569 6.39237 6.41658 6.57527 6.66734 6.74609 6.78837 6.97238 7.04542 7.43394 7.48284 7.65970 8.14325 8.36622 9.00940 9.42720 10.56523 10.75373 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.042199 B = 0.002406 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.362628 B =11634.682387 C =11787.521407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.642 5.642 3 C 0.557 3.443 4 O -0.580 6.580 5 C -0.543 4.543 6 H 0.072 0.928 7 C 0.087 3.913 8 N -0.768 5.768 9 Si 0.906 3.094 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.268 1.268 13 C 0.148 3.852 14 C -0.124 4.124 15 C 0.063 3.937 16 N -0.533 5.533 17 C 0.048 3.952 18 C 0.129 3.871 19 N -0.369 5.369 20 C 0.054 3.946 21 C -0.278 4.278 22 C 0.041 3.959 23 N -0.294 5.294 24 C 0.049 3.951 25 C -0.122 4.122 26 H 0.029 0.971 27 H 0.069 0.931 28 H 0.043 0.957 29 H 0.268 0.732 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.036 0.964 34 H 0.073 0.927 35 H 0.037 0.963 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.173 0.827 40 H 0.146 0.854 41 H 0.182 0.818 42 H 0.074 0.926 43 H 0.036 0.964 44 H 0.068 0.932 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.830 -20.384 3.302 20.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.379 5.379 3 C 0.363 3.637 4 O -0.463 6.463 5 C -0.579 4.579 6 H 0.090 0.910 7 C -0.133 4.133 8 N -0.397 5.397 9 Si 0.731 3.269 10 H -0.193 1.193 11 H -0.206 1.206 12 H -0.193 1.193 13 C 0.043 3.957 14 C -0.163 4.163 15 C -0.065 4.065 16 N -0.259 5.259 17 C -0.081 4.081 18 C 0.008 3.992 19 N -0.152 5.152 20 C -0.093 4.093 21 C -0.308 4.308 22 C -0.145 4.145 23 N -0.116 5.116 24 C -0.079 4.079 25 C -0.161 4.161 26 H 0.048 0.952 27 H 0.088 0.912 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.054 0.946 34 H 0.092 0.908 35 H 0.056 0.944 36 H 0.108 0.892 37 H 0.113 0.887 38 H 0.118 0.882 39 H 0.190 0.810 40 H 0.164 0.836 41 H 0.199 0.801 42 H 0.092 0.908 43 H 0.054 0.946 44 H 0.087 0.913 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.412 -19.630 2.495 19.935 hybrid contribution 0.956 0.484 0.657 1.257 sum -1.456 -19.146 3.153 19.458 Atomic orbital electron populations 1.21357 0.82397 1.01035 0.99489 1.47942 1.05055 1.04935 1.79977 1.18259 0.86952 0.82327 0.76176 1.90580 1.14110 1.86232 1.55403 1.20978 0.93681 0.89247 1.54031 0.91003 1.25747 0.94613 1.00320 0.92612 1.70012 1.07070 1.27355 1.35226 0.86454 0.79857 0.81108 0.79474 1.19256 1.20584 1.19258 1.20605 0.98638 0.84352 0.92122 1.21965 1.00941 0.93821 0.99541 1.22062 0.97846 0.94892 0.91714 1.62068 1.59402 1.01292 1.03112 1.22295 0.98467 0.90598 0.96746 1.21975 1.00683 0.77184 0.99390 1.48767 1.32680 1.10959 1.22747 1.22616 0.94003 0.96003 0.96655 1.21515 1.09395 0.96706 1.03177 1.23903 0.95774 0.97943 0.96923 1.77372 1.23860 0.96404 1.13915 1.22256 0.98100 0.95374 0.92184 1.21944 1.00846 0.93714 0.99580 0.95236 0.91199 0.93786 0.92085 0.89338 0.91243 0.91186 0.94617 0.90824 0.94434 0.89245 0.88667 0.88220 0.81017 0.83630 0.80150 0.90809 0.94558 0.91338 0.91279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.87 9.16 59.85 0.55 2.42 16 2 N -0.64 -14.33 2.77 -175.46 -0.49 -14.82 16 3 C 0.56 15.70 7.61 -12.99 -0.10 15.60 16 4 O -0.58 -18.59 14.35 5.20 0.07 -18.51 16 5 C -0.54 -15.12 8.74 -35.63 -0.31 -15.44 16 6 H 0.07 1.83 6.00 -52.48 -0.31 1.51 16 7 C 0.09 2.40 5.50 -17.36 -0.10 2.31 16 8 N -0.77 -22.89 11.83 55.55 0.66 -22.23 16 9 Si 0.91 19.98 29.56 -169.99 -5.02 14.95 16 10 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 11 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 12 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 13 C 0.15 2.81 2.59 -67.81 -0.18 2.64 16 14 C -0.12 -1.97 5.40 -26.65 -0.14 -2.11 16 15 C 0.06 0.85 5.42 -3.83 -0.02 0.82 16 16 N -0.53 -6.54 4.81 -234.66 -1.13 -7.67 16 17 C 0.05 0.52 5.46 -3.82 -0.02 0.49 16 18 C 0.13 1.20 5.76 -4.04 -0.02 1.17 16 19 N -0.37 -3.85 3.68 -61.36 -0.23 -4.07 16 20 C 0.05 0.47 11.45 -17.23 -0.20 0.27 16 21 C -0.28 -2.37 10.80 -40.01 -0.43 -2.80 16 22 C 0.04 0.39 12.03 -17.36 -0.21 0.18 16 23 N -0.29 -3.49 12.42 30.63 0.38 -3.11 16 24 C 0.05 0.61 4.85 -3.83 -0.02 0.59 16 25 C -0.12 -1.89 5.41 -26.65 -0.14 -2.03 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 1.34 6.09 -51.93 -0.32 1.02 16 28 H 0.04 0.69 6.39 -51.93 -0.33 0.36 16 29 H 0.27 7.28 8.29 -40.82 -0.34 6.94 16 30 H 0.09 1.98 6.90 -51.93 -0.36 1.62 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.07 1.07 6.58 -51.93 -0.34 0.73 16 33 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.89 8.12 -51.93 -0.42 0.47 16 35 H 0.04 0.43 8.08 -51.93 -0.42 0.01 16 36 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.10 0.76 6.14 -51.93 -0.32 0.44 16 39 H 0.17 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.15 0.90 8.06 -52.48 -0.42 0.48 16 41 H 0.18 1.15 8.06 -52.49 -0.42 0.73 16 42 H 0.07 0.74 5.81 -51.93 -0.30 0.43 16 43 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.07 1.03 7.60 -51.93 -0.39 0.64 16 LS Contribution 358.08 15.07 5.40 5.40 Total: -1.00 -35.01 358.08 -8.58 -43.59 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -6.88 Total: 2.37 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -1.34 Total: 4.10 kcal Atomic # 7 Polarization: -51.10 SS G_CDS: -0.80 Total: -51.90 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: 0.07 Total: -18.51 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.01 -8.58 -43.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331059965.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.897 kcal (2) G-P(sol) polarization free energy of solvation -35.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds