Wall clock time and date at job start Fri Apr 10 2020 17:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34780 * 119.99660 * 2 1 4 4 O 1.21689 * 119.99582 * 180.02562 * 3 2 1 5 5 C 1.46367 * 120.00073 * 0.02562 * 3 2 1 6 6 H 1.08003 * 120.00164 * 359.97438 * 5 3 2 7 7 C 1.40053 * 120.00078 * 179.97438 * 5 3 2 8 8 N 1.30673 * 119.99779 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99991 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47134 * 60.00285 * 9 7 5 11 11 H 1.48503 * 109.46789 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47211 * 300.00235 * 9 7 5 13 13 C 1.46504 * 120.00301 * 180.02562 * 2 1 3 14 14 C 1.53114 * 109.52257 * 59.99674 * 13 2 1 15 15 C 1.53044 * 109.27470 * 182.38099 * 14 13 2 16 16 N 1.46841 * 109.52349 * 59.18050 * 15 14 13 17 17 C 1.46905 * 110.99785 * 174.16158 * 16 15 14 18 18 C 1.53000 * 109.47021 * 169.99588 * 17 16 15 19 19 N 1.46503 * 109.47420 * 179.97438 * 18 17 16 20 20 C 1.34940 * 126.03757 * 124.99460 * 19 18 17 21 21 C 1.35317 * 107.74438 * 179.77616 * 20 19 18 22 22 C 1.39872 * 107.92021 * 0.23195 * 21 20 19 23 23 N 1.30838 * 108.20312 * 359.97438 * 22 21 20 24 24 C 1.46852 * 111.19885 * 298.25323 * 16 15 14 25 25 C 1.53034 * 109.51772 * 61.74469 * 24 16 15 26 26 H 1.09000 * 109.47340 * 269.99399 * 1 2 3 27 27 H 1.09000 * 109.47283 * 29.99736 * 1 2 3 28 28 H 1.09001 * 109.47090 * 150.00003 * 1 2 3 29 29 H 0.96998 * 120.00011 * 179.97438 * 8 7 5 30 30 H 1.08996 * 109.52182 * 180.12712 * 13 2 1 31 31 H 1.08993 * 109.50691 * 62.43894 * 14 13 2 32 32 H 1.09003 * 109.53676 * 302.33337 * 14 13 2 33 33 H 1.08998 * 109.46016 * 299.15887 * 15 14 13 34 34 H 1.09006 * 109.44848 * 179.19030 * 15 14 13 35 35 H 1.08996 * 109.47213 * 49.99691 * 17 16 15 36 36 H 1.09000 * 109.47223 * 289.99542 * 17 16 15 37 37 H 1.09005 * 109.47317 * 60.00027 * 18 17 16 38 38 H 1.08999 * 109.47532 * 300.00329 * 18 17 16 39 39 H 1.08002 * 126.13053 * 0.04913 * 20 19 18 40 40 H 1.08003 * 126.04109 * 180.21059 * 21 20 19 41 41 H 1.08001 * 125.89461 * 180.02562 * 22 21 20 42 42 H 1.09001 * 109.46481 * 181.76038 * 24 16 15 43 43 H 1.09003 * 109.46379 * 301.73068 * 24 16 15 44 44 H 1.09000 * 109.50126 * 180.87782 * 25 24 16 45 45 H 1.09003 * 109.50875 * 60.76729 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3557 1.1673 -0.0005 5 6 1.4069 2.4348 0.0006 6 1 0.3269 2.4348 0.0006 7 6 2.1071 3.6478 0.0011 8 7 3.4138 3.6478 0.0006 9 14 1.1730 5.2654 0.0026 10 1 0.3198 5.3432 1.2154 11 1 2.1380 6.3942 0.0023 12 1 0.3188 5.3448 -1.2095 13 6 2.1976 -1.2687 -0.0006 14 6 1.8285 -2.0721 -1.2507 15 6 2.5509 -3.4209 -1.2159 16 7 2.1596 -4.1561 -0.0065 17 6 2.7258 -5.5117 -0.0082 18 6 2.5109 -6.1558 1.3628 19 7 3.0749 -7.5079 1.3610 20 6 3.9868 -7.9889 2.2317 21 6 4.2417 -9.2742 1.8938 22 6 3.4628 -9.5878 0.7752 23 7 2.7648 -8.5290 0.4533 24 6 2.5465 -3.4258 1.2074 25 6 1.8240 -2.0773 1.2449 26 1 -0.3634 -0.0001 1.0277 27 1 -0.3634 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 3.8988 4.4878 0.0006 30 1 3.2693 -1.0705 0.0018 31 1 2.1310 -1.5202 -2.1405 32 1 0.7512 -2.2368 -1.2732 33 1 3.6282 -3.2557 -1.2080 34 1 2.2788 -4.0012 -2.0977 35 1 3.7933 -5.4593 -0.2217 36 1 2.2313 -6.1110 -0.7727 37 1 1.4432 -6.2083 1.5764 38 1 3.0052 -5.5566 2.1274 39 1 4.4301 -7.4467 3.0538 40 1 4.9261 -9.9401 2.3985 41 1 3.4407 -10.5398 0.2657 42 1 2.2716 -4.0098 2.0858 43 1 3.6240 -3.2606 1.2040 44 1 2.1233 -1.5289 2.1381 45 1 0.7467 -2.2419 1.2624 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331059965.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:56:43 Heat of formation + Delta-G solvation = 31.494169 kcal Electronic energy + Delta-G solvation = -25068.802811 eV Core-core repulsion = 21508.341761 eV Total energy + Delta-G solvation = -3560.461050 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.02056 -40.71972 -39.13597 -36.54034 -34.74937 -34.57706 -32.66623 -31.94050 -30.98681 -29.16810 -28.09659 -27.30331 -25.40921 -24.16184 -23.19138 -21.93661 -21.57032 -21.09971 -20.30875 -18.42404 -18.28991 -17.69119 -17.14408 -16.53902 -16.23051 -15.95110 -15.88600 -15.57369 -15.44818 -14.94950 -14.85334 -14.38903 -14.24368 -14.04133 -13.90919 -13.55643 -13.44917 -13.19671 -13.18141 -13.09707 -12.89073 -12.71551 -12.42084 -12.22650 -12.16674 -12.14027 -12.01391 -11.62438 -11.45573 -11.33025 -10.91644 -10.37961 -9.77888 -9.50195 -9.44757 -9.02984 -8.28358 -6.83819 1.00718 1.39142 1.42475 1.53901 1.57013 1.98789 2.23501 2.46086 2.78019 2.87232 3.47873 3.60020 3.76568 3.82541 3.98915 4.03950 4.07930 4.15354 4.21544 4.25714 4.36797 4.47382 4.54469 4.57514 4.64824 4.69918 4.74878 4.79176 4.84869 4.89292 4.93501 4.97813 5.00926 5.05745 5.18072 5.29091 5.32321 5.38296 5.74940 5.79881 5.91969 5.96576 6.15335 6.17020 6.47012 6.79911 6.87923 7.44047 8.48253 8.67995 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.042199 B = 0.002406 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.362628 B =11634.682387 C =11787.521407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.644 5.644 3 C 0.538 3.462 4 O -0.635 6.635 5 C -0.568 4.568 6 H 0.093 0.907 7 C 0.027 3.973 8 N -0.823 5.823 9 Si 0.995 3.005 10 H -0.253 1.253 11 H -0.276 1.276 12 H -0.254 1.254 13 C 0.143 3.857 14 C -0.112 4.112 15 C 0.069 3.931 16 N -0.529 5.529 17 C 0.057 3.943 18 C 0.132 3.868 19 N -0.381 5.381 20 C 0.050 3.950 21 C -0.287 4.287 22 C 0.034 3.966 23 N -0.338 5.338 24 C 0.055 3.945 25 C -0.111 4.111 26 H 0.043 0.957 27 H 0.061 0.939 28 H 0.077 0.923 29 H 0.273 0.727 30 H 0.043 0.957 31 H 0.049 0.951 32 H 0.085 0.915 33 H 0.024 0.976 34 H 0.092 0.908 35 H 0.030 0.970 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.119 0.881 39 H 0.202 0.798 40 H 0.167 0.833 41 H 0.204 0.796 42 H 0.109 0.891 43 H 0.027 0.973 44 H 0.052 0.948 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.762 -21.509 4.206 22.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.379 5.379 3 C 0.344 3.656 4 O -0.523 6.523 5 C -0.605 4.605 6 H 0.111 0.889 7 C -0.188 4.188 8 N -0.453 5.453 9 Si 0.814 3.186 10 H -0.177 1.177 11 H -0.201 1.201 12 H -0.178 1.178 13 C 0.039 3.961 14 C -0.151 4.151 15 C -0.060 4.060 16 N -0.255 5.255 17 C -0.071 4.071 18 C 0.011 3.989 19 N -0.164 5.164 20 C -0.096 4.096 21 C -0.316 4.316 22 C -0.151 4.151 23 N -0.160 5.160 24 C -0.073 4.073 25 C -0.150 4.150 26 H 0.062 0.938 27 H 0.080 0.920 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.103 0.897 33 H 0.042 0.958 34 H 0.110 0.890 35 H 0.048 0.952 36 H 0.100 0.900 37 H 0.116 0.884 38 H 0.137 0.863 39 H 0.219 0.781 40 H 0.185 0.815 41 H 0.220 0.780 42 H 0.127 0.873 43 H 0.046 0.954 44 H 0.071 0.929 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.394 -20.822 3.401 21.551 hybrid contribution 1.585 0.710 0.374 1.776 sum -2.809 -20.112 3.775 20.655 Atomic orbital electron populations 1.21518 0.79732 1.02271 1.00743 1.47831 1.06807 1.04665 1.78638 1.18666 0.86602 0.84378 0.75954 1.90530 1.16394 1.87551 1.57797 1.21512 0.94871 0.89850 1.54236 0.88922 1.27015 0.95496 1.05009 0.91260 1.70198 1.09564 1.28855 1.36662 0.85112 0.78248 0.74848 0.80367 1.17701 1.20106 1.17770 1.20770 0.95848 0.83892 0.95623 1.21822 1.01956 0.94413 0.96925 1.21972 0.96806 0.93905 0.93294 1.62044 1.59319 1.01738 1.02357 1.22185 0.97666 0.89376 0.97906 1.21968 1.01174 0.77167 0.98598 1.48854 1.33384 1.10987 1.23132 1.23215 0.93185 0.96391 0.96832 1.21883 1.09540 0.97186 1.02965 1.24423 0.95162 0.98319 0.97202 1.77315 1.25613 0.97533 1.15495 1.22238 0.97203 0.94213 0.93677 1.21815 1.01964 0.94526 0.96731 0.93823 0.92011 0.90492 0.91722 0.93897 0.93258 0.89687 0.95796 0.88969 0.95205 0.90012 0.88424 0.86272 0.78088 0.81517 0.77976 0.87306 0.95440 0.92911 0.89812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.56 9.16 127.77 1.17 4.73 16 2 N -0.64 -29.28 2.77 -827.24 -2.29 -31.57 16 3 C 0.54 31.56 7.61 86.36 0.66 32.21 16 4 O -0.63 -43.18 14.35 -4.31 -0.06 -43.25 16 5 C -0.57 -32.21 8.74 24.83 0.22 -32.00 16 6 H 0.09 4.67 6.00 -2.91 -0.02 4.66 16 7 C 0.03 1.52 5.50 85.31 0.47 1.99 16 8 N -0.82 -50.91 11.83 21.84 0.26 -50.65 16 9 Si 0.99 41.00 29.56 68.60 2.03 43.03 16 10 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 11 H -0.28 -11.05 7.11 99.48 0.71 -10.35 16 12 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 13 C 0.14 5.57 2.59 45.07 0.12 5.69 16 14 C -0.11 -3.56 5.40 30.65 0.17 -3.40 16 15 C 0.07 1.80 5.42 86.33 0.47 2.26 16 16 N -0.53 -12.04 4.81 -896.34 -4.31 -16.35 16 17 C 0.06 1.14 5.46 86.30 0.47 1.62 16 18 C 0.13 2.14 5.76 86.38 0.50 2.64 16 19 N -0.38 -7.24 3.68 -348.05 -1.28 -8.52 16 20 C 0.05 0.74 11.45 83.54 0.96 1.70 16 21 C -0.29 -4.26 10.80 21.99 0.24 -4.02 16 22 C 0.03 0.60 12.03 85.24 1.03 1.63 16 23 N -0.34 -7.64 12.42 -57.02 -0.71 -8.35 16 24 C 0.05 1.27 4.85 86.32 0.42 1.69 16 25 C -0.11 -3.36 5.41 30.65 0.17 -3.20 16 26 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.06 2.29 6.09 -2.39 -0.01 2.27 16 28 H 0.08 2.21 6.39 -2.39 -0.02 2.19 16 29 H 0.27 15.35 8.29 -92.71 -0.77 14.58 16 30 H 0.04 2.06 6.90 -2.39 -0.02 2.04 16 31 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.08 2.44 6.58 -2.39 -0.02 2.42 16 33 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.09 2.10 8.12 -2.38 -0.02 2.08 16 35 H 0.03 0.65 8.08 -2.39 -0.02 0.63 16 36 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 38 H 0.12 1.42 6.14 -2.39 -0.01 1.41 16 39 H 0.20 1.55 8.06 -2.91 -0.02 1.53 16 40 H 0.17 1.62 8.06 -2.91 -0.02 1.60 16 41 H 0.20 2.25 8.06 -2.91 -0.02 2.23 16 42 H 0.11 1.81 5.81 -2.39 -0.01 1.80 16 43 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.08 2.30 7.60 -2.39 -0.02 2.28 16 Total: -1.00 -81.01 358.08 1.65 -79.36 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 0.98 Total: 22.76 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: 7.04 Total: 13.53 kcal Atomic # 7 Polarization: -107.11 SS G_CDS: -8.33 Total: -115.44 kcal Atomic # 8 Polarization: -43.18 SS G_CDS: -0.06 Total: -43.25 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Total: -81.01 1.65 -79.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331059965.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.854 kcal (2) G-P(sol) polarization free energy of solvation -81.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds