Wall clock time and date at job start Fri Apr 10 2020 17:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48496 * 109.47117 * 239.99426 * 3 2 1 5 5 H 1.48498 * 109.47600 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00033 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46499 * 109.46992 * 179.97438 * 12 10 9 14 14 C 1.34777 * 126.25790 * 269.68519 * 13 12 10 15 15 O 1.21597 * 125.27002 * 359.97438 * 14 13 12 16 16 O 1.34230 * 109.45075 * 179.82803 * 14 13 12 17 17 C 1.35555 * 109.17616 * 0.44705 * 16 14 13 18 18 C 1.38622 * 132.99412 * 179.70746 * 17 16 14 19 19 C 1.38118 * 119.91641 * 179.97438 * 18 17 16 20 20 C 1.38402 * 120.31313 * 0.04181 * 19 18 17 21 21 N 1.48022 * 119.90854 * 179.97438 * 20 19 18 22 22 O 1.21798 * 119.99843 * 180.02562 * 21 20 19 23 23 O 1.21801 * 119.99836 * 0.02562 * 21 20 19 24 24 C 1.38132 * 120.18750 * 359.97435 * 20 19 18 25 25 C 1.38616 * 119.82339 * 0.02562 * 24 20 19 26 26 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 27 27 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 28 28 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 29 29 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 30 30 H 1.08001 * 120.03948 * 359.97438 * 18 17 16 31 31 H 1.08004 * 119.83962 * 180.02562 * 19 18 17 32 32 H 1.08000 * 120.08745 * 179.97438 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1019 1.6965 -1.2124 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1960 -5.9764 -0.0016 14 6 2.7095 -6.5856 -1.0887 15 8 2.4539 -6.2966 -2.2418 16 8 3.5490 -7.5585 -0.7010 17 6 3.5855 -7.6017 0.6534 18 6 4.2689 -8.4021 1.5556 19 6 4.1026 -8.2072 2.9128 20 6 3.2555 -7.2164 3.3776 21 7 3.0836 -7.0157 4.8341 22 8 2.3381 -6.1445 5.2450 23 8 3.6875 -7.7218 5.6216 24 6 2.5700 -6.4141 2.4863 25 6 2.7319 -6.6038 1.1227 26 1 -0.4850 0.8401 -0.0004 27 1 0.3535 -2.3906 0.0002 28 1 0.6170 -4.9209 0.8886 29 1 0.6176 -4.9205 -0.8913 30 1 4.9305 -9.1770 1.1976 31 1 4.6360 -8.8313 3.6146 32 1 1.9091 -5.6417 2.8508 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342749690.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:56:55 Heat of formation + Delta-G solvation = -63.442259 kcal Electronic energy + Delta-G solvation = -24525.840232 eV Core-core repulsion = 20456.044484 eV Total energy + Delta-G solvation = -4069.795748 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 307.073 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.79921 -43.25614 -40.44578 -40.04103 -38.80646 -37.72455 -37.24836 -36.06286 -33.48987 -32.73046 -31.85261 -30.05514 -27.68745 -26.90952 -24.42363 -24.27255 -23.68146 -21.43552 -21.15572 -20.20969 -19.83324 -19.35375 -19.04886 -18.62882 -18.58113 -17.83451 -17.40910 -16.82425 -16.46630 -16.18079 -15.86716 -15.65423 -15.47690 -14.94377 -14.82185 -14.66586 -13.92002 -13.60411 -13.49120 -13.19569 -12.95180 -12.73306 -12.56664 -12.49804 -12.39700 -12.36687 -12.30226 -12.17398 -11.63837 -10.72053 -10.52967 -10.16600 -9.68910 -8.57395 -6.07620 -1.43056 -0.44666 0.06568 0.15439 0.52286 1.06086 1.31949 1.38460 1.41198 1.49280 1.80599 1.91499 2.22851 2.72024 2.93827 3.04290 3.18245 3.30952 3.36690 3.66589 3.90423 4.03716 4.08790 4.18625 4.27639 4.51508 4.63102 4.74771 4.86275 5.19091 5.31393 5.66440 5.82943 6.16433 6.41842 6.43650 6.97928 7.34315 7.87836 8.58506 Molecular weight = 307.07amu Principal moments of inertia in cm(-1) A = 0.013775 B = 0.004314 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.111560 B = 6489.455641 C = 7964.097412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.003 4.003 3 Si 0.992 3.008 4 H -0.274 1.274 5 H -0.267 1.267 6 H -0.271 1.271 7 C -0.340 4.340 8 H 0.078 0.922 9 N -0.552 5.552 10 C 0.412 3.588 11 O -0.630 6.630 12 C 0.124 3.876 13 N -0.519 5.519 14 C 0.641 3.359 15 O -0.508 6.508 16 O -0.226 6.226 17 C 0.078 3.922 18 C -0.049 4.049 19 C -0.027 4.027 20 C -0.035 4.035 21 N 0.033 4.967 22 O -0.207 6.207 23 O -0.125 6.125 24 C -0.040 4.040 25 C 0.067 3.933 26 H 0.282 0.718 27 H 0.402 0.598 28 H 0.154 0.846 29 H 0.137 0.863 30 H 0.213 0.787 31 H 0.209 0.791 32 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.149 -18.525 6.212 19.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.204 4.204 3 Si 0.815 3.185 4 H -0.199 1.199 5 H -0.191 1.191 6 H -0.196 1.196 7 C -0.470 4.470 8 H 0.096 0.904 9 N -0.188 5.188 10 C 0.198 3.802 11 O -0.518 6.518 12 C 0.000 4.000 13 N -0.248 5.248 14 C 0.396 3.604 15 O -0.392 6.392 16 O -0.131 6.131 17 C 0.030 3.970 18 C -0.068 4.068 19 C -0.047 4.047 20 C -0.119 4.119 21 N 0.551 4.449 22 O -0.411 6.411 23 O -0.352 6.352 24 C -0.062 4.062 25 C -0.032 4.032 26 H 0.091 0.909 27 H 0.237 0.763 28 H 0.172 0.828 29 H 0.155 0.845 30 H 0.230 0.770 31 H 0.226 0.774 32 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 3.694 -18.270 4.609 19.201 hybrid contribution -0.486 1.576 0.023 1.650 sum 3.208 -16.694 4.632 17.619 Atomic orbital electron populations 1.69635 1.06726 1.29851 1.48640 1.26020 0.96541 1.02340 0.95528 0.85012 0.77910 0.76666 0.78934 1.19921 1.19084 1.19612 1.19590 0.92707 0.83725 1.50931 0.90391 1.41791 1.09622 1.04347 1.63065 1.20872 0.88474 0.86358 0.84462 1.90539 1.15716 1.87737 1.57790 1.21564 0.88900 0.80429 1.09059 1.45273 1.43198 1.31887 1.04471 1.18410 0.78273 0.78435 0.85263 1.91149 1.63717 1.66938 1.17369 1.85032 1.57153 1.49730 1.21171 1.19855 0.98476 0.97817 0.80833 1.20481 0.99032 0.99400 0.87843 1.21238 0.93567 0.93985 0.95869 1.20735 1.07573 1.04566 0.78993 1.43595 0.98613 0.99051 1.03637 1.94630 1.35609 1.27915 1.82961 1.94494 1.45155 1.42995 1.52546 1.19621 0.99348 0.99081 0.88134 1.18178 0.99573 0.96245 0.89186 0.90851 0.76301 0.82799 0.84480 0.77015 0.77401 0.82364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.90 13.05 21.66 0.28 -46.62 16 2 C 0.00 -0.13 5.50 84.92 0.47 0.33 16 3 Si 0.99 41.78 29.55 68.60 2.03 43.81 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 6 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.34 -18.69 9.68 84.04 0.81 -17.88 16 8 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 9 N -0.55 -26.80 5.29 -306.98 -1.62 -28.42 16 10 C 0.41 18.59 7.85 87.66 0.69 19.27 16 11 O -0.63 -34.04 16.01 -3.07 -0.05 -34.09 16 12 C 0.12 3.86 6.52 85.63 0.56 4.42 16 13 N -0.52 -16.24 2.29 -765.12 -1.75 -18.00 16 14 C 0.64 21.94 9.07 129.79 1.18 23.11 16 15 O -0.51 -20.71 17.80 19.20 0.34 -20.37 16 16 O -0.23 -6.19 10.72 8.56 0.09 -6.10 16 17 C 0.08 1.66 7.35 22.66 0.17 1.83 16 18 C -0.05 -0.54 10.06 22.33 0.22 -0.31 16 19 C -0.03 -0.31 9.54 22.28 0.21 -0.10 16 20 C -0.03 -0.69 6.85 36.39 0.25 -0.44 16 21 N 0.03 0.79 4.45 -46.42 -0.21 0.59 16 22 O -0.21 -6.03 18.44 18.89 0.35 -5.69 16 23 O -0.13 -2.81 18.44 18.88 0.35 -2.46 16 24 C -0.04 -0.94 9.54 22.33 0.21 -0.73 16 25 C 0.07 1.73 6.84 38.31 0.26 2.00 16 26 H 0.28 13.64 8.31 -92.71 -0.77 12.87 16 27 H 0.40 18.03 7.90 -92.71 -0.73 17.29 16 28 H 0.15 3.49 8.14 -2.39 -0.02 3.47 16 29 H 0.14 3.81 8.06 -2.39 -0.02 3.80 16 30 H 0.21 0.41 8.06 -2.91 -0.02 0.39 16 31 H 0.21 0.88 7.60 -2.91 -0.02 0.86 16 32 H 0.16 3.84 7.61 -2.91 -0.02 3.82 16 Total: -1.00 -75.35 309.00 5.33 -70.02 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 0.49 Total: 15.82 kcal Atomic # 6 Polarization: 26.48 SS G_CDS: 5.03 Total: 31.51 kcal Atomic # 7 Polarization: -89.16 SS G_CDS: -3.30 Total: -92.46 kcal Atomic # 8 Polarization: -69.78 SS G_CDS: 1.08 Total: -68.70 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -75.35 5.33 -70.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342749690.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.577 kcal (2) G-P(sol) polarization free energy of solvation -75.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds