Wall clock time and date at job start Fri Apr 10 2020 17:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36879 * 120.00157 * 2 1 4 4 H 1.08001 * 120.00215 * 185.90657 * 3 2 1 5 5 C 1.39045 * 119.99863 * 5.90565 * 3 2 1 6 6 N 1.31368 * 119.99852 * 5.91792 * 5 3 2 7 7 Si 1.86799 * 119.99900 * 185.91244 * 5 3 2 8 8 H 1.48501 * 109.47335 * 0.02562 * 7 5 3 9 9 H 1.48501 * 109.47080 * 120.00203 * 7 5 3 10 10 H 1.48503 * 109.46811 * 240.00448 * 7 5 3 11 11 C 1.34772 * 120.00025 * 180.02562 * 2 1 3 12 12 O 1.21621 * 120.00267 * 183.88761 * 11 2 1 13 13 C 1.47527 * 120.00179 * 3.88248 * 11 2 1 14 14 C 1.39675 * 120.18504 * 302.10561 * 13 11 2 15 15 C 1.37969 * 119.89729 * 180.25289 * 14 13 11 16 16 Cl 1.73595 * 119.86492 * 179.79026 * 15 14 13 17 17 C 1.38628 * 120.27112 * 359.76994 * 15 14 13 18 18 C 1.38112 * 120.38184 * 359.97438 * 17 15 14 19 19 C 1.38685 * 120.09939 * 359.97438 * 18 17 15 20 20 N 1.39863 * 120.13620 * 179.97438 * 19 18 17 21 21 C 1.35148 * 127.39877 * 353.50288 * 20 19 18 22 22 N 1.30721 * 107.26449 * 179.97438 * 21 20 19 23 23 N 1.28418 * 110.65470 * 0.02562 * 22 21 20 24 24 N 1.28955 * 110.22151 * 359.97438 * 23 22 21 25 25 H 1.09001 * 109.47467 * 174.87017 * 1 2 3 26 26 H 1.08997 * 109.47062 * 294.88006 * 1 2 3 27 27 H 1.09007 * 109.46851 * 54.87438 * 1 2 3 28 28 H 0.96998 * 119.99292 * 180.02562 * 6 5 3 29 29 H 1.08005 * 120.05675 * 0.02562 * 14 13 11 30 30 H 1.08003 * 119.80112 * 179.97438 * 17 15 14 31 31 H 1.08006 * 119.94466 * 180.02562 * 18 17 15 32 32 H 1.07995 * 126.36663 * 0.03468 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1854 0.0000 4 1 3.2251 1.1879 -0.0962 5 6 1.4597 2.3864 0.1239 6 7 0.1670 2.3803 0.3573 7 14 2.3715 4.0083 -0.0414 8 1 3.8094 3.7437 -0.3014 9 1 1.7995 4.7848 -1.1706 10 1 2.2303 4.7859 1.2159 11 6 2.1388 -1.1672 -0.0005 12 8 3.3530 -1.1684 0.0709 13 6 1.4038 -2.4433 -0.0876 14 6 0.4388 -2.7647 0.8697 15 6 -0.2414 -3.9621 0.7855 16 17 -1.4366 -4.3630 1.9789 17 6 0.0255 -4.8461 -0.2484 18 6 0.9736 -4.5376 -1.2041 19 6 1.6658 -3.3378 -1.1352 20 7 2.6264 -3.0247 -2.1023 21 6 3.0855 -3.8228 -3.0917 22 7 3.9720 -3.1364 -3.7639 23 7 4.1053 -1.9597 -3.2674 24 7 3.3217 -1.8120 -2.2540 25 1 -0.3634 -1.0235 -0.0919 26 1 -0.3633 0.4323 0.9323 27 1 -0.3633 0.5913 -0.8406 28 1 -0.3142 3.2182 0.4434 29 1 0.2280 -2.0786 1.6768 30 1 -0.5112 -5.7816 -0.3068 31 1 1.1756 -5.2313 -2.0069 32 1 2.7766 -4.8383 -3.2906 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354131402.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:57:08 Heat of formation + Delta-G solvation = 122.395258 kcal Electronic energy + Delta-G solvation = -22875.670588 eV Core-core repulsion = 19286.935276 eV Total energy + Delta-G solvation = -3588.735313 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 307.058 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.21822 -41.35179 -39.50044 -37.70957 -36.76720 -35.95202 -33.85223 -33.33956 -32.32331 -31.05027 -28.37936 -26.93789 -26.01381 -25.18149 -23.57759 -23.03476 -21.31221 -19.56248 -19.03006 -18.40325 -17.63275 -17.30551 -17.19286 -16.71193 -16.29375 -15.96126 -15.59344 -15.29176 -14.83477 -14.49374 -14.26340 -14.02644 -13.68676 -13.58334 -13.44716 -13.15083 -12.89633 -12.77320 -12.68168 -12.39243 -12.17436 -12.03531 -11.99027 -11.89070 -11.52699 -11.09377 -10.56264 -10.14407 -9.90585 -9.63482 -8.32076 -5.93861 -0.83576 -0.13980 0.48414 0.79231 1.01402 1.25451 1.31365 1.36399 1.50627 1.92320 2.19429 2.37249 2.89658 2.99594 3.10987 3.34015 3.63715 3.70889 3.78721 3.99097 4.17321 4.28885 4.32004 4.45528 4.62339 4.66376 4.90791 5.01157 5.07819 5.25897 5.38837 5.42189 5.58973 5.96896 6.41166 7.11124 7.36196 7.39448 7.96170 8.60174 Molecular weight = 307.06amu Principal moments of inertia in cm(-1) A = 0.011316 B = 0.006558 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.750572 B = 4268.628293 C = 6418.354653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.445 5.445 3 C -0.327 4.327 4 H 0.074 0.926 5 C -0.003 4.003 6 N -0.892 5.892 7 Si 0.989 3.011 8 H -0.279 1.279 9 H -0.268 1.268 10 H -0.266 1.266 11 C 0.471 3.529 12 O -0.611 6.611 13 C -0.098 4.098 14 C -0.076 4.076 15 C -0.029 4.029 16 Cl -0.045 7.045 17 C -0.060 4.060 18 C -0.084 4.084 19 C 0.138 3.862 20 N -0.335 5.335 21 C 0.238 3.762 22 N -0.360 5.360 23 N -0.087 5.087 24 N -0.063 5.063 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.041 0.959 28 H 0.274 0.726 29 H 0.135 0.865 30 H 0.200 0.800 31 H 0.206 0.794 32 H 0.310 0.690 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.722 -19.235 -1.765 21.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.161 5.161 3 C -0.455 4.455 4 H 0.092 0.908 5 C -0.204 4.204 6 N -0.532 5.532 7 Si 0.813 3.187 8 H -0.204 1.204 9 H -0.193 1.193 10 H -0.191 1.191 11 C 0.260 3.740 12 O -0.498 6.498 13 C -0.104 4.104 14 C -0.096 4.096 15 C -0.056 4.056 16 Cl -0.016 7.016 17 C -0.079 4.079 18 C -0.105 4.105 19 C 0.044 3.956 20 N -0.126 5.126 21 C -0.057 4.057 22 N -0.208 5.208 23 N -0.082 5.082 24 N -0.048 5.048 25 H 0.077 0.923 26 H 0.087 0.913 27 H 0.060 0.940 28 H 0.084 0.916 29 H 0.153 0.847 30 H 0.217 0.783 31 H 0.223 0.777 32 H 0.325 0.675 Dipole moment (debyes) X Y Z Total from point charges -7.571 -17.882 -1.942 19.516 hybrid contribution -0.021 0.981 0.662 1.183 sum -7.592 -16.901 -1.280 18.572 Atomic orbital electron populations 1.21777 0.78883 0.98171 1.03058 1.43749 1.06957 1.04556 1.60885 1.19696 0.92857 0.83676 1.49297 0.90842 1.26026 0.96788 1.02075 0.95541 1.70185 1.07703 1.28362 1.46934 0.84931 0.77958 0.77237 0.78593 1.20435 1.19294 1.19078 1.18049 0.87130 0.83786 0.85065 1.90620 1.15060 1.87039 1.57038 1.19750 0.98454 0.95680 0.96490 1.21071 0.93564 0.96890 0.98106 1.21008 0.94928 0.95129 0.94564 1.98400 1.54336 1.93243 1.55581 1.21494 0.96038 1.00181 0.90167 1.21333 0.94600 0.92677 1.01883 1.18009 0.91949 0.97182 0.88443 1.49140 1.29209 1.11086 1.23131 1.28681 0.91313 1.01666 0.84083 1.74252 1.19638 0.99941 1.26929 1.78122 1.15257 1.11676 1.03147 1.83474 1.05695 1.02680 1.12971 0.92322 0.91343 0.93980 0.91587 0.84668 0.78341 0.77682 0.67506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.74 8.15 127.77 1.04 6.78 16 2 N -0.44 -23.95 3.02 -662.54 -2.00 -25.95 16 3 C -0.33 -19.41 9.55 84.10 0.80 -18.61 16 4 H 0.07 4.77 7.19 -2.91 -0.02 4.75 16 5 C 0.00 -0.17 5.41 84.96 0.46 0.29 16 6 N -0.89 -47.12 9.55 21.68 0.21 -46.91 16 7 Si 0.99 44.39 29.56 68.60 2.03 46.42 16 8 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 9 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 10 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 11 C 0.47 24.06 5.62 86.69 0.49 24.55 16 12 O -0.61 -36.40 14.54 -4.10 -0.06 -36.46 16 13 C -0.10 -3.63 4.74 -20.00 -0.09 -3.72 16 14 C -0.08 -2.26 7.27 22.55 0.16 -2.10 16 15 C -0.03 -0.58 6.31 22.30 0.14 -0.44 16 16 Cl -0.04 -0.80 28.94 -2.72 -0.08 -0.88 16 17 C -0.06 -0.74 9.81 22.33 0.22 -0.52 16 18 C -0.08 -1.18 9.48 22.35 0.21 -0.97 16 19 C 0.14 3.99 6.71 38.45 0.26 4.25 16 20 N -0.33 -11.23 3.81 -190.35 -0.73 -11.95 16 21 C 0.24 5.58 12.15 180.16 2.19 7.77 16 22 N -0.36 -12.20 12.15 -60.10 -0.73 -12.93 16 23 N -0.09 -3.86 13.39 37.02 0.50 -3.36 16 24 N -0.06 -2.96 9.94 37.02 0.37 -2.59 16 25 H 0.06 2.25 4.76 -2.39 -0.01 2.24 16 26 H 0.07 3.30 6.84 -2.39 -0.02 3.28 16 27 H 0.04 2.08 7.29 -2.38 -0.02 2.06 16 28 H 0.27 13.46 8.31 -92.71 -0.77 12.69 16 29 H 0.14 4.32 7.65 -2.91 -0.02 4.30 16 30 H 0.20 0.61 8.06 -2.91 -0.02 0.59 16 31 H 0.21 0.36 6.91 -2.91 -0.02 0.34 16 32 H 0.31 1.55 7.23 -2.91 -0.02 1.53 16 Total: -1.00 -85.77 295.67 6.58 -79.19 By element: Atomic # 1 Polarization: -3.06 SS G_CDS: 1.20 Total: -1.87 kcal Atomic # 6 Polarization: 11.40 SS G_CDS: 5.88 Total: 17.28 kcal Atomic # 7 Polarization: -101.30 SS G_CDS: -2.39 Total: -103.69 kcal Atomic # 8 Polarization: -36.40 SS G_CDS: -0.06 Total: -36.46 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -0.08 Total: -0.88 kcal Total: -85.77 6.58 -79.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354131402.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.587 kcal (2) G-P(sol) polarization free energy of solvation -85.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds