Wall clock time and date at job start Fri Apr 10 2020 17:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 N 1.46499 * 109.46840 * 239.99674 * 2 1 3 5 5 C 1.30894 * 119.99784 * 120.00362 * 4 2 1 6 6 C 1.46806 * 126.82965 * 359.68345 * 5 4 2 7 7 C 1.33979 * 107.50853 * 179.87203 * 6 5 4 8 8 N 1.37521 * 109.48387 * 0.49369 * 7 6 5 9 9 N 1.38481 * 126.83173 * 180.02562 * 5 4 2 10 10 H 0.97006 * 126.29616 * 359.89342 * 9 5 4 11 11 C 1.46877 * 124.20967 * 179.52584 * 8 7 6 12 12 C 1.53183 * 108.78987 * 342.69362 * 11 8 7 13 13 C 1.53124 * 109.57365 * 51.01024 * 12 11 8 14 14 C 1.51194 * 126.60570 * 180.24329 * 7 6 5 15 15 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 16 16 O 1.21277 * 119.99833 * 119.99582 * 15 2 1 17 17 N 1.34773 * 120.00068 * 299.99925 * 15 2 1 18 18 C 1.46501 * 120.00203 * 359.97438 * 17 15 2 19 19 C 1.46500 * 119.99996 * 179.97438 * 17 15 2 20 20 C 1.50698 * 109.47197 * 89.99987 * 19 17 15 21 21 H 1.08004 * 119.99807 * 359.97438 * 20 19 17 22 22 C 1.37873 * 120.00370 * 180.02562 * 20 19 17 23 23 N 1.31516 * 120.00103 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00544 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47070 * 59.99302 * 24 22 20 26 26 H 1.48494 * 109.47448 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.46637 * 299.99933 * 24 22 20 28 28 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 30 30 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 31 31 H 1.07996 * 126.24292 * 0.03696 * 6 5 4 32 32 H 1.09003 * 109.58102 * 102.48173 * 11 8 7 33 33 H 1.08997 * 109.58513 * 222.90166 * 11 8 7 34 34 H 1.08999 * 109.45130 * 171.03744 * 12 11 8 35 35 H 1.08996 * 109.45481 * 290.97940 * 12 11 8 36 36 H 1.09003 * 109.51252 * 49.63230 * 13 12 11 37 37 H 1.09000 * 109.50744 * 169.72961 * 13 12 11 38 38 H 1.08999 * 109.72154 * 44.77090 * 14 7 6 39 39 H 1.08999 * 109.76023 * 284.12699 * 14 7 6 40 40 H 1.09002 * 109.47088 * 90.00108 * 18 17 15 41 41 H 1.08992 * 109.47451 * 209.99999 * 18 17 15 42 42 H 1.09007 * 109.46824 * 330.00395 * 18 17 15 43 43 H 1.09004 * 109.47343 * 209.99881 * 19 17 15 44 44 H 1.08993 * 109.47349 * 329.99860 * 19 17 15 45 45 H 0.96996 * 120.00759 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.7708 -0.0546 -2.0578 6 6 3.2093 1.3442 -1.9790 7 6 3.9640 1.5914 -3.0580 8 7 4.0376 0.4594 -3.8354 9 7 3.3064 -0.5654 -3.2282 10 1 3.1945 -1.4683 -3.5648 11 6 4.7764 0.3741 -5.1020 12 6 5.0552 1.7931 -5.6071 13 6 5.6914 2.6207 -4.4869 14 6 4.6405 2.8983 -3.4049 15 6 2.0323 -0.7104 1.2305 16 8 2.7295 -1.6965 1.1192 17 7 1.7068 -0.2499 2.4545 18 6 0.8650 0.9415 2.5890 19 6 2.1946 -0.9409 3.6507 20 6 3.5223 -0.3580 4.0611 21 1 3.9593 0.4464 3.4880 22 6 4.1798 -0.8522 5.1676 23 7 3.6481 -1.8321 5.8653 24 14 5.8253 -0.1293 5.6768 25 1 5.6602 1.3164 5.9736 26 1 6.3198 -0.8297 6.8892 27 1 6.8035 -0.2993 4.5726 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 2.9696 2.0452 -1.1932 32 1 5.7195 -0.1481 -4.9404 33 1 4.1794 -0.1649 -5.8376 34 1 5.7362 1.7485 -6.4571 35 1 4.1195 2.2589 -5.9160 36 1 6.5236 2.0666 -4.0525 37 1 6.0550 3.5645 -4.8931 38 1 5.1246 3.3085 -2.5186 39 1 3.9027 3.6065 -3.7820 40 1 -0.1831 0.6440 2.6222 41 1 1.1228 1.4667 3.5086 42 1 1.0289 1.6003 1.7361 43 1 1.4766 -0.8153 4.4612 44 1 2.3153 -2.0021 3.4335 45 1 4.1107 -2.1801 6.6435 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367010292.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:57:20 Heat of formation + Delta-G solvation = 71.859389 kcal Electronic energy + Delta-G solvation = -25359.292127 eV Core-core repulsion = 21800.581445 eV Total energy + Delta-G solvation = -3558.710683 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.96458 -38.85984 -36.83342 -34.67015 -34.49423 -32.87042 -32.47200 -31.03888 -29.51693 -27.62923 -27.06187 -25.82065 -24.63876 -23.77346 -22.17492 -22.14946 -19.98648 -19.36954 -18.10347 -17.78295 -16.42035 -16.09016 -15.83880 -15.41980 -14.80140 -14.70107 -14.64747 -14.43072 -14.29689 -14.17096 -13.69859 -13.39617 -13.01597 -12.91487 -12.77543 -12.35900 -12.12080 -11.98417 -11.60335 -11.53889 -11.53319 -11.38259 -11.17508 -11.11689 -10.93586 -10.76589 -10.43932 -10.08089 -10.03577 -9.50189 -9.24223 -8.66835 -8.38379 -8.32128 -7.40229 -6.80942 -5.92549 -3.96728 1.65734 1.78825 3.29581 3.38361 3.42284 3.46053 3.73156 3.81241 4.12704 4.20775 4.27871 4.30008 4.41425 4.56049 4.82699 4.90541 4.98407 5.10104 5.20799 5.29433 5.38236 5.39908 5.44366 5.46154 5.55819 5.67504 5.70550 5.74920 5.84845 5.91614 6.04490 6.08781 6.15797 6.26823 6.35886 6.59976 6.85732 7.24876 7.46384 7.61308 7.73913 7.78444 8.05878 8.38342 8.59609 8.74201 9.04667 9.42332 9.68510 11.15386 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.015120 B = 0.003521 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.352411 B = 7950.780240 C = 8956.993238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.090 3.910 3 H 0.063 0.937 4 N -0.587 5.587 5 C 0.427 3.573 6 C -0.316 4.316 7 C 0.171 3.829 8 N -0.415 5.415 9 N -0.516 5.516 10 H 0.440 0.560 11 C 0.142 3.858 12 C -0.131 4.131 13 C -0.128 4.128 14 C -0.064 4.064 15 C 0.510 3.490 16 O -0.526 6.526 17 N -0.608 5.608 18 C 0.084 3.916 19 C 0.247 3.753 20 C -0.523 4.523 21 H 0.055 0.945 22 C 0.059 3.941 23 N -0.897 5.897 24 Si 0.897 3.103 25 H -0.277 1.277 26 H -0.286 1.286 27 H -0.277 1.277 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.152 0.848 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.046 0.954 41 H 0.070 0.930 42 H 0.056 0.944 43 H 0.031 0.969 44 H 0.042 0.958 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.430 12.652 -24.890 27.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.025 4.025 3 H 0.080 0.920 4 N -0.318 5.318 5 C 0.155 3.845 6 C -0.350 4.350 7 C 0.058 3.942 8 N -0.211 5.211 9 N -0.250 5.250 10 H 0.287 0.713 11 C 0.021 3.979 12 C -0.169 4.169 13 C -0.165 4.165 14 C -0.102 4.102 15 C 0.295 3.705 16 O -0.401 6.401 17 N -0.342 5.342 18 C -0.060 4.060 19 C 0.128 3.872 20 C -0.562 4.562 21 H 0.074 0.926 22 C -0.142 4.142 23 N -0.536 5.536 24 Si 0.725 3.275 25 H -0.203 1.203 26 H -0.212 1.212 27 H -0.203 1.203 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.170 0.830 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.116 0.884 39 H 0.111 0.889 40 H 0.064 0.936 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.049 0.951 44 H 0.060 0.940 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.301 11.004 -24.875 27.202 hybrid contribution 1.112 0.642 0.389 1.342 sum 0.811 11.646 -24.486 27.127 Atomic orbital electron populations 1.21975 0.93289 1.02951 1.01966 1.21142 0.95886 0.95867 0.89628 0.91961 1.72021 1.21943 1.32709 1.05143 1.20207 0.90528 0.88045 0.85767 1.22168 1.12264 0.97602 1.02954 1.20567 0.95421 0.87535 0.90647 1.46089 1.49831 1.04177 1.21003 1.43507 1.52137 1.07952 1.21400 0.71337 1.21755 0.95356 0.98979 0.81763 1.21878 1.02443 0.93686 0.98916 1.21668 0.98257 1.00999 0.95599 1.20678 0.97684 0.91508 1.00347 1.20346 0.80960 0.85220 0.83936 1.90629 1.37097 1.26301 1.86063 1.48116 1.50438 1.28404 1.07223 1.21743 0.93802 0.88308 1.02144 1.19219 0.93976 0.93729 0.80318 1.21443 1.04931 1.18861 1.10917 0.92636 1.24937 0.97859 0.95039 0.96363 1.69928 1.39022 1.26189 1.18457 0.86578 0.84124 0.79009 0.77814 1.20268 1.21210 1.20288 0.91923 0.90797 0.92752 0.83000 0.91065 0.90254 0.89147 0.90508 0.90909 0.90212 0.88388 0.88891 0.93608 0.91120 0.92519 0.95131 0.94014 0.92785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.15 37.16 0.34 -1.94 16 2 C 0.09 1.74 2.53 -69.08 -0.17 1.56 16 3 H 0.06 1.10 5.24 -51.93 -0.27 0.83 16 4 N -0.59 -11.77 9.74 -53.22 -0.52 -12.28 16 5 C 0.43 7.26 8.30 -153.67 -1.27 5.98 16 6 C -0.32 -4.51 9.99 -37.62 -0.38 -4.89 16 7 C 0.17 1.88 6.58 -81.29 -0.53 1.35 16 8 N -0.41 -4.42 4.08 -56.32 -0.23 -4.65 16 9 N -0.52 -6.97 7.43 32.42 0.24 -6.73 16 10 H 0.44 5.15 8.96 -182.84 -1.64 3.51 16 11 C 0.14 0.89 7.25 -3.74 -0.03 0.86 16 12 C -0.13 -0.53 5.92 -26.57 -0.16 -0.69 16 13 C -0.13 -0.61 5.95 -26.48 -0.16 -0.77 16 14 C -0.06 -0.42 6.26 -27.45 -0.17 -0.59 16 15 C 0.51 12.52 7.14 -10.99 -0.08 12.44 16 16 O -0.53 -15.57 16.01 5.56 0.09 -15.49 16 17 N -0.61 -14.41 2.86 -182.96 -0.52 -14.93 16 18 C 0.08 1.48 8.80 59.85 0.53 2.00 16 19 C 0.25 7.00 5.16 -5.19 -0.03 6.98 16 20 C -0.52 -15.78 9.39 -34.44 -0.32 -16.11 16 21 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 22 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 23 N -0.90 -27.91 13.29 55.43 0.74 -27.18 16 24 Si 0.90 22.81 29.54 -169.99 -5.02 17.79 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.07 1.04 4.53 -51.93 -0.24 0.80 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.15 2.04 6.91 -52.49 -0.36 1.68 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 35 H 0.08 0.32 8.11 -51.93 -0.42 -0.10 16 36 H 0.07 0.41 8.11 -51.93 -0.42 -0.01 16 37 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.05 0.70 6.95 -51.93 -0.36 0.33 16 41 H 0.07 1.25 8.07 -51.93 -0.42 0.83 16 42 H 0.06 0.84 6.01 -51.93 -0.31 0.53 16 43 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 44 H 0.04 1.34 7.42 -51.93 -0.39 0.95 16 45 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 361.78 15.07 5.45 5.45 Total: -1.00 -40.27 361.78 -10.48 -50.75 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -8.18 Total: -0.60 kcal Atomic # 6 Polarization: 10.41 SS G_CDS: -2.53 Total: 7.88 kcal Atomic # 7 Polarization: -65.48 SS G_CDS: -0.29 Total: -65.78 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: 0.09 Total: -15.49 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -40.27 -10.48 -50.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367010292.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.609 kcal (2) G-P(sol) polarization free energy of solvation -40.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds