Wall clock time and date at job start Fri Apr 10 2020 17:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 N 1.46499 * 109.46840 * 239.99674 * 2 1 3 5 5 C 1.30894 * 119.99784 * 120.00362 * 4 2 1 6 6 C 1.46806 * 126.82965 * 359.68345 * 5 4 2 7 7 C 1.33979 * 107.50853 * 179.87203 * 6 5 4 8 8 N 1.37521 * 109.48387 * 0.49369 * 7 6 5 9 9 N 1.38481 * 126.83173 * 180.02562 * 5 4 2 10 10 H 0.97006 * 126.29616 * 359.89342 * 9 5 4 11 11 C 1.46877 * 124.20967 * 179.52584 * 8 7 6 12 12 C 1.53183 * 108.78987 * 342.69362 * 11 8 7 13 13 C 1.53124 * 109.57365 * 51.01024 * 12 11 8 14 14 C 1.51194 * 126.60570 * 180.24329 * 7 6 5 15 15 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 16 16 O 1.21277 * 119.99833 * 119.99582 * 15 2 1 17 17 N 1.34773 * 120.00068 * 299.99925 * 15 2 1 18 18 C 1.46501 * 120.00203 * 359.97438 * 17 15 2 19 19 C 1.46500 * 119.99996 * 179.97438 * 17 15 2 20 20 C 1.50698 * 109.47197 * 89.99987 * 19 17 15 21 21 H 1.08004 * 119.99807 * 359.97438 * 20 19 17 22 22 C 1.37873 * 120.00370 * 180.02562 * 20 19 17 23 23 N 1.31516 * 120.00103 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00544 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47070 * 59.99302 * 24 22 20 26 26 H 1.48494 * 109.47448 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.46637 * 299.99933 * 24 22 20 28 28 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 30 30 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 31 31 H 1.07996 * 126.24292 * 0.03696 * 6 5 4 32 32 H 1.09003 * 109.58102 * 102.48173 * 11 8 7 33 33 H 1.08997 * 109.58513 * 222.90166 * 11 8 7 34 34 H 1.08999 * 109.45130 * 171.03744 * 12 11 8 35 35 H 1.08996 * 109.45481 * 290.97940 * 12 11 8 36 36 H 1.09003 * 109.51252 * 49.63230 * 13 12 11 37 37 H 1.09000 * 109.50744 * 169.72961 * 13 12 11 38 38 H 1.08999 * 109.72154 * 44.77090 * 14 7 6 39 39 H 1.08999 * 109.76023 * 284.12699 * 14 7 6 40 40 H 1.09002 * 109.47088 * 90.00108 * 18 17 15 41 41 H 1.08992 * 109.47451 * 209.99999 * 18 17 15 42 42 H 1.09007 * 109.46824 * 330.00395 * 18 17 15 43 43 H 1.09004 * 109.47343 * 209.99881 * 19 17 15 44 44 H 1.08993 * 109.47349 * 329.99860 * 19 17 15 45 45 H 0.96996 * 120.00759 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.7708 -0.0546 -2.0578 6 6 3.2093 1.3442 -1.9790 7 6 3.9640 1.5914 -3.0580 8 7 4.0376 0.4594 -3.8354 9 7 3.3064 -0.5654 -3.2282 10 1 3.1945 -1.4683 -3.5648 11 6 4.7764 0.3741 -5.1020 12 6 5.0552 1.7931 -5.6071 13 6 5.6914 2.6207 -4.4869 14 6 4.6405 2.8983 -3.4049 15 6 2.0323 -0.7104 1.2305 16 8 2.7295 -1.6965 1.1192 17 7 1.7068 -0.2499 2.4545 18 6 0.8650 0.9415 2.5890 19 6 2.1946 -0.9409 3.6507 20 6 3.5223 -0.3580 4.0611 21 1 3.9593 0.4464 3.4880 22 6 4.1798 -0.8522 5.1676 23 7 3.6481 -1.8321 5.8653 24 14 5.8253 -0.1293 5.6768 25 1 5.6602 1.3164 5.9736 26 1 6.3198 -0.8297 6.8892 27 1 6.8035 -0.2993 4.5726 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 2.9696 2.0452 -1.1932 32 1 5.7195 -0.1481 -4.9404 33 1 4.1794 -0.1649 -5.8376 34 1 5.7362 1.7485 -6.4571 35 1 4.1195 2.2589 -5.9160 36 1 6.5236 2.0666 -4.0525 37 1 6.0550 3.5645 -4.8931 38 1 5.1246 3.3085 -2.5186 39 1 3.9027 3.6065 -3.7820 40 1 -0.1831 0.6440 2.6222 41 1 1.1228 1.4667 3.5086 42 1 1.0289 1.6003 1.7361 43 1 1.4766 -0.8153 4.4612 44 1 2.3153 -2.0021 3.4335 45 1 4.1107 -2.1801 6.6435 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000367010292.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:57:19 Heat of formation + Delta-G solvation = 42.071437 kcal Electronic energy + Delta-G solvation = -25360.583830 eV Core-core repulsion = 21800.581445 eV Total energy + Delta-G solvation = -3560.002385 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.90856 -40.67415 -37.63466 -36.55659 -35.87832 -34.69049 -33.58373 -32.21796 -30.59350 -29.44229 -28.09503 -27.49136 -25.68155 -25.23915 -23.87692 -22.78716 -21.35361 -20.10292 -19.63022 -18.91068 -18.65452 -17.63907 -17.14995 -16.70052 -16.41055 -16.21028 -15.64626 -15.42420 -15.24209 -14.97784 -14.82223 -14.49293 -14.42970 -14.27782 -14.12409 -13.79222 -13.52239 -13.34222 -13.26470 -13.00764 -12.84860 -12.60304 -12.57534 -12.33537 -12.15048 -11.95185 -11.85462 -11.76474 -11.72161 -11.14058 -10.65303 -10.43365 -10.16590 -9.81659 -9.37838 -8.22365 -7.94173 -6.38248 0.73035 0.82809 1.33770 1.39749 1.47157 1.91126 2.04335 2.35830 2.58968 2.88871 3.05801 3.49322 3.79562 3.85212 3.88228 3.89530 3.97607 4.14842 4.34666 4.38316 4.40748 4.46605 4.54092 4.66692 4.75713 4.83588 4.85109 4.90658 4.92836 4.93456 5.02295 5.03733 5.08407 5.17702 5.18581 5.23233 5.34108 5.36831 5.56526 5.86314 5.92488 6.07052 6.36941 6.68069 6.73102 6.85893 7.27912 7.46578 7.58737 8.84740 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.015120 B = 0.003521 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.352411 B = 7950.780240 C = 8956.993238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.105 3.895 3 H 0.079 0.921 4 N -0.650 5.650 5 C 0.417 3.583 6 C -0.368 4.368 7 C 0.196 3.804 8 N -0.405 5.405 9 N -0.518 5.518 10 H 0.444 0.556 11 C 0.128 3.872 12 C -0.124 4.124 13 C -0.126 4.126 14 C -0.064 4.064 15 C 0.497 3.503 16 O -0.593 6.593 17 N -0.612 5.612 18 C 0.077 3.923 19 C 0.261 3.739 20 C -0.545 4.545 21 H 0.051 0.949 22 C 0.005 3.995 23 N -0.930 5.930 24 Si 0.972 3.028 25 H -0.255 1.255 26 H -0.275 1.275 27 H -0.281 1.281 28 H 0.041 0.959 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.153 0.847 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.119 0.881 35 H 0.082 0.918 36 H 0.062 0.938 37 H 0.106 0.894 38 H 0.103 0.897 39 H 0.118 0.882 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.090 0.910 43 H 0.027 0.973 44 H -0.011 1.011 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.800 16.135 -27.326 31.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.010 4.010 3 H 0.096 0.904 4 N -0.386 5.386 5 C 0.146 3.854 6 C -0.402 4.402 7 C 0.080 3.920 8 N -0.200 5.200 9 N -0.250 5.250 10 H 0.292 0.708 11 C 0.009 3.991 12 C -0.162 4.162 13 C -0.164 4.164 14 C -0.102 4.102 15 C 0.286 3.714 16 O -0.474 6.474 17 N -0.344 5.344 18 C -0.065 4.065 19 C 0.139 3.861 20 C -0.583 4.583 21 H 0.069 0.931 22 C -0.194 4.194 23 N -0.570 5.570 24 Si 0.795 3.205 25 H -0.179 1.179 26 H -0.199 1.199 27 H -0.206 1.206 28 H 0.060 0.940 29 H 0.112 0.888 30 H 0.096 0.904 31 H 0.171 0.829 32 H 0.096 0.904 33 H 0.115 0.885 34 H 0.137 0.863 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.125 0.875 38 H 0.121 0.879 39 H 0.136 0.864 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.108 0.892 43 H 0.045 0.955 44 H 0.007 0.993 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.911 14.516 -27.378 31.002 hybrid contribution 0.816 -0.451 0.946 1.328 sum 1.727 14.065 -26.432 29.991 Atomic orbital electron populations 1.21946 0.90905 1.02269 1.04032 1.21003 0.97539 0.95329 0.87119 0.90352 1.71973 1.25758 1.34262 1.06566 1.20602 0.89391 0.89488 0.85872 1.22166 1.15981 0.96661 1.05421 1.21298 0.92868 0.88894 0.88961 1.46786 1.48332 1.03171 1.21736 1.43730 1.51467 1.08916 1.20910 0.70821 1.22294 0.95317 1.01405 0.80074 1.21934 1.03369 0.91562 0.99372 1.21709 0.97211 1.02373 0.95088 1.20938 0.98552 0.89204 1.01516 1.21564 0.79771 0.84633 0.85478 1.90566 1.40220 1.29420 1.87148 1.48170 1.50722 1.29694 1.05815 1.22097 0.94266 0.86473 1.03655 1.18725 0.93938 0.91417 0.82002 1.21680 1.05961 1.19215 1.11476 0.93091 1.25938 1.02097 0.95246 0.96115 1.70059 1.40834 1.27214 1.18855 0.85416 0.78334 0.79340 0.77395 1.17902 1.19949 1.20645 0.93967 0.88836 0.90350 0.82915 0.90374 0.88534 0.86276 0.89956 0.91891 0.87533 0.87870 0.86434 0.90615 0.91162 0.89193 0.95517 0.99275 0.92327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.20 9.15 71.98 0.66 -3.54 16 2 C 0.11 4.17 2.53 44.25 0.11 4.29 16 3 H 0.08 2.78 5.24 -2.39 -0.01 2.76 16 4 N -0.65 -27.28 9.74 -322.28 -3.14 -30.42 16 5 C 0.42 14.54 8.30 135.71 1.13 15.67 16 6 C -0.37 -10.43 9.99 23.54 0.24 -10.20 16 7 C 0.20 3.96 6.58 40.85 0.27 4.23 16 8 N -0.41 -7.95 4.08 -332.09 -1.35 -9.30 16 9 N -0.52 -14.04 7.43 -51.35 -0.38 -14.42 16 10 H 0.44 10.64 8.96 -213.52 -1.91 8.73 16 11 C 0.13 1.21 7.25 86.37 0.63 1.84 16 12 C -0.12 -0.46 5.92 30.70 0.18 -0.28 16 13 C -0.13 -0.67 5.95 30.76 0.18 -0.49 16 14 C -0.06 -0.63 6.26 30.13 0.19 -0.44 16 15 C 0.50 25.69 7.14 87.66 0.63 26.31 16 16 O -0.59 -37.82 16.01 -3.02 -0.05 -37.87 16 17 N -0.61 -30.06 2.86 -851.15 -2.43 -32.49 16 18 C 0.08 2.63 8.80 127.77 1.12 3.76 16 19 C 0.26 15.61 5.16 85.63 0.44 16.06 16 20 C -0.54 -34.04 9.39 25.60 0.24 -33.80 16 21 H 0.05 3.15 7.81 -2.91 -0.02 3.13 16 22 C 0.00 0.29 5.46 84.65 0.46 0.75 16 23 N -0.93 -59.50 13.29 21.45 0.28 -59.21 16 24 Si 0.97 47.23 29.54 68.60 2.03 49.26 16 25 H -0.25 -11.43 7.11 99.48 0.71 -10.73 16 26 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 27 H -0.28 -13.73 7.11 99.48 0.71 -13.03 16 28 H 0.04 1.47 8.14 -2.39 -0.02 1.46 16 29 H 0.09 2.46 4.53 -2.39 -0.01 2.45 16 30 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.15 4.10 6.91 -2.91 -0.02 4.08 16 32 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.12 -0.13 8.14 -2.39 -0.02 -0.14 16 35 H 0.08 0.29 8.11 -2.39 -0.02 0.27 16 36 H 0.06 0.50 8.11 -2.39 -0.02 0.48 16 37 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 38 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.08 2.16 6.95 -2.39 -0.02 2.14 16 41 H 0.07 2.42 8.07 -2.39 -0.02 2.40 16 42 H 0.09 2.49 6.01 -2.38 -0.01 2.48 16 43 H 0.03 1.59 8.07 -2.39 -0.02 1.57 16 44 H -0.01 -0.76 7.42 -2.39 -0.02 -0.77 16 45 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 Total: -1.00 -95.32 361.78 0.52 -94.80 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -0.91 Total: 15.50 kcal Atomic # 6 Polarization: 17.67 SS G_CDS: 6.47 Total: 24.15 kcal Atomic # 7 Polarization: -138.82 SS G_CDS: -7.02 Total: -145.84 kcal Atomic # 8 Polarization: -37.82 SS G_CDS: -0.05 Total: -37.87 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.26 kcal Total: -95.32 0.52 -94.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367010292.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.875 kcal (2) G-P(sol) polarization free energy of solvation -95.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds