Wall clock time and date at job start Fri Apr 10 2020 17:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46506 * 119.99819 * 2 1 4 4 C 1.38995 * 120.00340 * 179.97438 * 2 1 3 5 5 C 1.39141 * 119.70149 * 5.00048 * 4 2 1 6 6 C 1.38304 * 119.09452 * 180.02562 * 5 4 2 7 7 C 1.38887 * 118.50362 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.32833 * 179.97438 * 7 6 5 9 9 N 1.46496 * 109.47288 * 90.00569 * 8 7 6 10 10 C 1.34775 * 120.00555 * 179.97438 * 9 8 7 11 11 O 1.21283 * 119.99555 * 359.97438 * 10 9 8 12 12 C 1.50700 * 120.00303 * 180.02562 * 10 9 8 13 13 H 1.08990 * 109.47465 * 39.99472 * 12 10 9 14 14 N 1.46901 * 109.46865 * 159.99804 * 12 10 9 15 15 C 1.53000 * 109.46738 * 279.99439 * 12 10 9 16 16 C 1.52997 * 109.47060 * 175.00110 * 15 12 10 17 17 C 1.50697 * 109.47466 * 180.02562 * 16 15 12 18 18 H 1.08001 * 119.99890 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00428 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00362 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99850 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.47052 * 89.99717 * 21 19 17 23 23 H 1.48495 * 109.47307 * 209.99656 * 21 19 17 24 24 H 1.48500 * 109.47143 * 330.00164 * 21 19 17 25 25 C 1.38010 * 119.32950 * 0.25525 * 7 6 5 26 26 N 1.31974 * 120.86357 * 359.45080 * 25 7 6 27 27 H 1.08991 * 109.47061 * 240.00446 * 1 2 3 28 28 H 1.08999 * 109.46911 * 0.02562 * 1 2 3 29 29 H 1.09007 * 109.46561 * 120.00342 * 1 2 3 30 30 H 1.09000 * 109.46459 * 269.99525 * 3 2 1 31 31 H 1.09006 * 109.47105 * 29.99084 * 3 2 1 32 32 H 1.08998 * 109.46965 * 149.99659 * 3 2 1 33 33 H 1.07996 * 120.45546 * 0.02715 * 5 4 2 34 34 H 1.08001 * 120.74742 * 180.02562 * 6 5 4 35 35 H 1.08992 * 109.47557 * 330.00025 * 8 7 6 36 36 H 1.09001 * 109.46764 * 209.99973 * 8 7 6 37 37 H 0.97005 * 120.00198 * 359.97438 * 9 8 7 38 38 H 1.00902 * 111.00138 * 60.00335 * 14 12 10 39 39 H 1.00908 * 110.99704 * 183.94920 * 14 12 10 40 40 H 1.09002 * 109.47398 * 295.00279 * 15 12 10 41 41 H 1.09001 * 109.47194 * 55.00459 * 15 12 10 42 42 H 1.09002 * 109.47153 * 300.00319 * 16 15 12 43 43 H 1.08998 * 109.47533 * 59.99948 * 16 15 12 44 44 H 0.96994 * 119.99814 * 180.02562 * 20 19 17 45 45 H 1.08012 * 119.57236 * 179.74458 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1601 -1.2037 0.0005 5 6 1.4622 -2.4028 -0.1043 6 6 2.1663 -3.5932 -0.1019 7 6 3.5501 -3.5445 0.0061 8 6 4.3581 -4.8166 0.0135 9 7 4.7254 -5.1698 -1.3600 10 6 5.4550 -6.2774 -1.5990 11 8 5.8080 -6.9816 -0.6767 12 6 5.8333 -6.6404 -3.0118 13 1 6.1016 -5.7371 -3.5596 14 7 6.9794 -7.5591 -2.9912 15 6 4.6471 -7.3201 -3.6987 16 6 4.9870 -7.5761 -5.1683 17 6 3.8185 -8.2450 -5.8451 18 1 2.9227 -8.4651 -5.2833 19 6 3.8924 -8.5751 -7.1817 20 7 2.8724 -9.1584 -7.7724 21 14 5.4409 -8.1925 -8.1540 22 1 6.3737 -9.3452 -8.0729 23 1 5.0849 -7.9428 -9.5738 24 1 6.0952 -6.9856 -7.5880 25 6 4.1772 -2.3197 0.1125 26 7 3.4802 -1.1991 0.1019 27 1 -0.3633 -0.5137 0.8899 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3633 -0.5139 -0.8900 30 1 2.3792 1.5833 -1.0277 31 1 1.6083 2.0285 0.5137 32 1 3.1499 1.1385 0.5139 33 1 0.3853 -2.4041 -0.1864 34 1 1.6517 -4.5393 -0.1823 35 1 3.7656 -5.6208 0.4494 36 1 5.2619 -4.6695 0.6048 37 1 4.4434 -4.6064 -2.0977 38 1 6.7557 -8.4051 -2.4887 39 1 7.2931 -7.7670 -3.9275 40 1 4.4353 -8.2681 -3.2042 41 1 3.7716 -6.6738 -3.6356 42 1 5.1988 -6.6281 -5.6628 43 1 5.8625 -8.2223 -5.2315 44 1 2.9246 -9.3910 -8.7127 45 1 5.2529 -2.2774 0.2009 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424134915.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:57:44 Heat of formation + Delta-G solvation = 1.073972 kcal Electronic energy + Delta-G solvation = -24231.019678 eV Core-core repulsion = 20669.239509 eV Total energy + Delta-G solvation = -3561.780169 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.66827 -39.53660 -37.12622 -35.68303 -34.76569 -32.79901 -32.62818 -31.09885 -30.30271 -28.59467 -27.68424 -26.29221 -24.53812 -23.54958 -23.02952 -21.27620 -20.53731 -19.85387 -17.81591 -17.44618 -17.01615 -16.65109 -16.21428 -15.64750 -15.18200 -14.97008 -14.78807 -14.56273 -14.28337 -14.20084 -14.01788 -13.59391 -13.31027 -13.26170 -13.01762 -12.98375 -12.66245 -12.64195 -12.45398 -12.30783 -11.91892 -11.75880 -11.32681 -10.97654 -10.43854 -10.25629 -10.09727 -9.95186 -9.86231 -9.65503 -9.38340 -9.31091 -8.97366 -8.61840 -8.30302 -7.85237 -6.11585 -4.10992 1.00271 1.14447 2.57692 2.91836 3.25483 3.28620 3.33708 3.35263 3.77858 4.24612 4.38004 4.52385 4.60464 4.69596 4.81889 4.92315 4.93537 5.01186 5.07110 5.08877 5.21615 5.22198 5.27540 5.34821 5.49042 5.52016 5.61660 5.63877 5.67302 5.76036 6.11069 6.15621 6.31002 6.34584 6.50634 6.56730 6.67266 7.01173 7.09922 7.23147 7.35917 7.66556 7.68464 7.80103 7.87145 8.43973 8.45852 8.92469 9.49838 11.01670 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.014303 B = 0.002750 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.154708 B =10178.943343 C =11322.871209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.619 5.619 3 C 0.098 3.902 4 C 0.403 3.597 5 C -0.237 4.237 6 C -0.012 4.012 7 C -0.219 4.219 8 C 0.176 3.824 9 N -0.731 5.731 10 C 0.526 3.474 11 O -0.538 6.538 12 C 0.071 3.929 13 H 0.096 0.904 14 N -0.831 5.831 15 C -0.129 4.129 16 C -0.011 4.011 17 C -0.523 4.523 18 H 0.071 0.929 19 C 0.067 3.933 20 N -0.901 5.901 21 Si 0.881 3.119 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.265 1.265 25 C 0.169 3.831 26 N -0.543 5.543 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.059 0.941 30 H 0.047 0.953 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.132 0.868 34 H 0.136 0.864 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.402 0.598 38 H 0.348 0.652 39 H 0.350 0.650 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.018 0.982 43 H 0.012 0.988 44 H 0.264 0.736 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.610 19.588 16.867 25.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.333 5.333 3 C -0.045 4.045 4 C 0.169 3.831 5 C -0.262 4.262 6 C -0.039 4.039 7 C -0.224 4.224 8 C 0.052 3.948 9 N -0.384 5.384 10 C 0.313 3.687 11 O -0.414 6.414 12 C -0.044 4.044 13 H 0.114 0.886 14 N -0.362 5.362 15 C -0.169 4.169 16 C -0.048 4.048 17 C -0.561 4.561 18 H 0.089 0.911 19 C -0.135 4.135 20 N -0.540 5.540 21 Si 0.708 3.292 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.189 1.189 25 C 0.010 3.990 26 N -0.260 5.260 27 H 0.076 0.924 28 H 0.097 0.903 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.150 0.850 34 H 0.154 0.846 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.236 0.764 38 H 0.161 0.839 39 H 0.164 0.836 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.036 0.964 43 H 0.030 0.970 44 H 0.074 0.926 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.712 20.566 17.842 27.281 hybrid contribution -0.684 -0.974 -1.676 2.056 sum -2.397 19.592 16.166 25.513 Atomic orbital electron populations 1.21686 0.78343 1.02961 1.01627 1.46223 1.05152 1.03164 1.78763 1.21606 0.97740 0.83781 1.01355 1.18366 0.88532 0.85833 0.90360 1.21404 1.01092 0.91636 1.12070 1.21319 0.93222 0.98165 0.91144 1.20560 0.94625 0.96086 1.11141 1.19891 0.97973 0.92806 0.84081 1.46133 1.56116 1.27360 1.08828 1.20783 0.76650 0.79789 0.91524 1.90643 1.53733 1.50932 1.46075 1.21511 0.92700 0.98406 0.91763 0.88591 1.58736 1.34873 1.20376 1.22259 1.22193 0.96140 1.00149 0.98395 1.19575 0.97428 0.96666 0.91159 1.21070 1.00920 1.38992 0.95126 0.91084 1.25047 0.96236 0.94471 0.97720 1.69911 1.30690 1.41665 1.11736 0.86767 0.83755 0.79393 0.79293 1.20203 1.21353 1.18943 1.22359 0.99500 0.86157 0.90953 1.67198 1.06185 1.31589 1.21029 0.92436 0.90336 0.92270 0.93436 0.91940 0.90184 0.85005 0.84609 0.90937 0.90821 0.76410 0.83856 0.83558 0.92068 0.91921 0.96366 0.97031 0.92640 0.82643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.52 9.40 59.85 0.56 1.08 16 2 N -0.62 -5.23 3.39 -189.66 -0.64 -5.87 16 3 C 0.10 0.69 10.47 59.85 0.63 1.32 16 4 C 0.40 4.22 7.37 -155.03 -1.14 3.08 16 5 C -0.24 -2.24 9.34 -39.22 -0.37 -2.61 16 6 C -0.01 -0.12 9.85 -39.32 -0.39 -0.50 16 7 C -0.22 -2.17 5.27 -104.47 -0.55 -2.72 16 8 C 0.18 1.94 5.82 -5.20 -0.03 1.91 16 9 N -0.73 -9.12 5.55 -61.48 -0.34 -9.46 16 10 C 0.53 8.34 7.08 -10.99 -0.08 8.27 16 11 O -0.54 -10.17 16.25 5.55 0.09 -10.08 16 12 C 0.07 1.15 3.21 -68.86 -0.22 0.93 16 13 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 14 N -0.83 -13.47 8.94 -5.66 -0.05 -13.52 16 15 C -0.13 -2.42 4.78 -26.73 -0.13 -2.55 16 16 C -0.01 -0.24 3.81 -27.89 -0.11 -0.35 16 17 C -0.52 -14.52 9.66 -34.44 -0.33 -14.85 16 18 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 19 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 20 N -0.90 -27.44 13.96 55.43 0.77 -26.67 16 21 Si 0.88 21.15 27.47 -169.99 -4.67 16.48 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.26 -6.03 6.54 56.52 0.37 -5.66 16 25 C 0.17 1.71 10.84 -17.57 -0.19 1.52 16 26 N -0.54 -6.12 9.08 -12.44 -0.11 -6.23 16 27 H 0.06 0.28 8.11 -51.93 -0.42 -0.14 16 28 H 0.08 0.27 7.79 -51.93 -0.40 -0.13 16 29 H 0.06 0.31 7.73 -51.93 -0.40 -0.10 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.30 7.92 -51.93 -0.41 -0.11 16 32 H 0.08 0.65 7.30 -51.93 -0.38 0.27 16 33 H 0.13 0.99 6.71 -52.49 -0.35 0.64 16 34 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 35 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16 36 H 0.07 0.81 8.09 -51.93 -0.42 0.39 16 37 H 0.40 4.48 8.46 -40.82 -0.35 4.13 16 38 H 0.35 5.75 8.58 -39.29 -0.34 5.42 16 39 H 0.35 5.47 7.55 -39.29 -0.30 5.18 16 40 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 42 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 43 H 0.01 0.25 6.30 -51.93 -0.33 -0.07 16 44 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 45 H 0.16 1.31 8.06 -52.48 -0.42 0.89 16 LS Contribution 372.57 15.07 5.61 5.61 Total: -1.00 -34.06 372.57 -8.79 -42.86 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -7.01 Total: 10.55 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -2.44 Total: -3.68 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: -0.37 Total: -61.74 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.08 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.48 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.06 -8.79 -42.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424134915.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.929 kcal (2) G-P(sol) polarization free energy of solvation -34.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds