Wall clock time and date at job start Fri Apr 10 2020 17:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46506 * 119.99819 * 2 1 4 4 C 1.38995 * 120.00340 * 179.97438 * 2 1 3 5 5 C 1.39141 * 119.70149 * 5.00048 * 4 2 1 6 6 C 1.38304 * 119.09452 * 180.02562 * 5 4 2 7 7 C 1.38887 * 118.50362 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.32833 * 179.97438 * 7 6 5 9 9 N 1.46496 * 109.47288 * 90.00569 * 8 7 6 10 10 C 1.34775 * 120.00555 * 179.97438 * 9 8 7 11 11 O 1.21283 * 119.99555 * 359.97438 * 10 9 8 12 12 C 1.50700 * 120.00303 * 180.02562 * 10 9 8 13 13 H 1.08990 * 109.47465 * 39.99472 * 12 10 9 14 14 N 1.46901 * 109.46865 * 159.99804 * 12 10 9 15 15 C 1.53000 * 109.46738 * 279.99439 * 12 10 9 16 16 C 1.52997 * 109.47060 * 175.00110 * 15 12 10 17 17 C 1.50697 * 109.47466 * 180.02562 * 16 15 12 18 18 H 1.08001 * 119.99890 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00428 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00362 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99850 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.47052 * 89.99717 * 21 19 17 23 23 H 1.48495 * 109.47307 * 209.99656 * 21 19 17 24 24 H 1.48500 * 109.47143 * 330.00164 * 21 19 17 25 25 C 1.38010 * 119.32950 * 0.25525 * 7 6 5 26 26 N 1.31974 * 120.86357 * 359.45080 * 25 7 6 27 27 H 1.08991 * 109.47061 * 240.00446 * 1 2 3 28 28 H 1.08999 * 109.46911 * 0.02562 * 1 2 3 29 29 H 1.09007 * 109.46561 * 120.00342 * 1 2 3 30 30 H 1.09000 * 109.46459 * 269.99525 * 3 2 1 31 31 H 1.09006 * 109.47105 * 29.99084 * 3 2 1 32 32 H 1.08998 * 109.46965 * 149.99659 * 3 2 1 33 33 H 1.07996 * 120.45546 * 0.02715 * 5 4 2 34 34 H 1.08001 * 120.74742 * 180.02562 * 6 5 4 35 35 H 1.08992 * 109.47557 * 330.00025 * 8 7 6 36 36 H 1.09001 * 109.46764 * 209.99973 * 8 7 6 37 37 H 0.97005 * 120.00198 * 359.97438 * 9 8 7 38 38 H 1.00902 * 111.00138 * 60.00335 * 14 12 10 39 39 H 1.00908 * 110.99704 * 183.94920 * 14 12 10 40 40 H 1.09002 * 109.47398 * 295.00279 * 15 12 10 41 41 H 1.09001 * 109.47194 * 55.00459 * 15 12 10 42 42 H 1.09002 * 109.47153 * 300.00319 * 16 15 12 43 43 H 1.08998 * 109.47533 * 59.99948 * 16 15 12 44 44 H 0.96994 * 119.99814 * 180.02562 * 20 19 17 45 45 H 1.08012 * 119.57236 * 179.74458 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1601 -1.2037 0.0005 5 6 1.4622 -2.4028 -0.1043 6 6 2.1663 -3.5932 -0.1019 7 6 3.5501 -3.5445 0.0061 8 6 4.3581 -4.8166 0.0135 9 7 4.7254 -5.1698 -1.3600 10 6 5.4550 -6.2774 -1.5990 11 8 5.8080 -6.9816 -0.6767 12 6 5.8333 -6.6404 -3.0118 13 1 6.1016 -5.7371 -3.5596 14 7 6.9794 -7.5591 -2.9912 15 6 4.6471 -7.3201 -3.6987 16 6 4.9870 -7.5761 -5.1683 17 6 3.8185 -8.2450 -5.8451 18 1 2.9227 -8.4651 -5.2833 19 6 3.8924 -8.5751 -7.1817 20 7 2.8724 -9.1584 -7.7724 21 14 5.4409 -8.1925 -8.1540 22 1 6.3737 -9.3452 -8.0729 23 1 5.0849 -7.9428 -9.5738 24 1 6.0952 -6.9856 -7.5880 25 6 4.1772 -2.3197 0.1125 26 7 3.4802 -1.1991 0.1019 27 1 -0.3633 -0.5137 0.8899 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3633 -0.5139 -0.8900 30 1 2.3792 1.5833 -1.0277 31 1 1.6083 2.0285 0.5137 32 1 3.1499 1.1385 0.5139 33 1 0.3853 -2.4041 -0.1864 34 1 1.6517 -4.5393 -0.1823 35 1 3.7656 -5.6208 0.4494 36 1 5.2619 -4.6695 0.6048 37 1 4.4434 -4.6064 -2.0977 38 1 6.7557 -8.4051 -2.4887 39 1 7.2931 -7.7670 -3.9275 40 1 4.4353 -8.2681 -3.2042 41 1 3.7716 -6.6738 -3.6356 42 1 5.1988 -6.6281 -5.6628 43 1 5.8625 -8.2223 -5.2315 44 1 2.9246 -9.3910 -8.7127 45 1 5.2529 -2.2774 0.2009 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424134915.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:57:43 Heat of formation + Delta-G solvation = -23.830043 kcal Electronic energy + Delta-G solvation = -24232.099597 eV Core-core repulsion = 20669.239509 eV Total energy + Delta-G solvation = -3562.860088 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.44768 -40.72870 -37.83955 -37.10596 -35.81344 -34.79823 -33.41946 -32.06338 -31.91624 -29.09005 -28.85704 -27.52439 -25.63806 -24.60067 -23.96273 -22.21685 -21.98030 -21.14143 -19.15229 -18.48764 -18.27868 -17.74013 -17.28068 -16.39665 -16.25134 -16.13716 -16.00939 -15.70106 -15.54340 -15.28292 -15.02299 -14.79207 -14.59213 -14.39267 -14.15150 -13.96633 -13.67546 -13.48860 -13.46774 -13.09931 -13.03456 -12.85083 -12.66052 -12.52284 -12.06989 -11.90951 -11.65635 -11.39972 -11.14065 -10.77197 -10.69249 -10.64936 -10.41933 -10.05482 -9.63121 -8.52224 -8.29670 -6.34943 0.24896 0.39672 1.38738 1.40069 1.51504 1.65680 2.00487 2.25004 2.36482 2.96491 3.06071 3.56656 3.74848 3.75905 3.88373 3.99987 4.02148 4.10918 4.13040 4.22042 4.34676 4.49068 4.52243 4.59702 4.61098 4.72035 4.76554 4.80120 4.87117 4.89047 4.96676 4.98299 5.03942 5.36277 5.37270 5.43767 5.48792 5.61050 5.63288 5.99596 6.09170 6.25751 6.33933 6.51529 6.56962 6.73706 7.14463 7.26585 7.29885 8.87130 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.014303 B = 0.002750 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.154708 B =10178.943343 C =11322.871209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.624 5.624 3 C 0.097 3.903 4 C 0.388 3.612 5 C -0.242 4.242 6 C -0.017 4.017 7 C -0.221 4.221 8 C 0.181 3.819 9 N -0.716 5.716 10 C 0.526 3.474 11 O -0.572 6.572 12 C 0.080 3.920 13 H 0.117 0.883 14 N -0.830 5.830 15 C -0.118 4.118 16 C -0.007 4.007 17 C -0.534 4.534 18 H 0.027 0.973 19 C 0.002 3.998 20 N -0.953 5.953 21 Si 0.953 3.047 22 H -0.267 1.267 23 H -0.288 1.288 24 H -0.237 1.237 25 C 0.164 3.836 26 N -0.564 5.564 27 H 0.063 0.937 28 H 0.099 0.901 29 H 0.061 0.939 30 H 0.046 0.954 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.149 0.851 34 H 0.145 0.855 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.410 0.590 38 H 0.345 0.655 39 H 0.354 0.646 40 H 0.043 0.957 41 H 0.063 0.937 42 H 0.030 0.970 43 H 0.024 0.976 44 H 0.266 0.734 45 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.571 21.510 16.958 27.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.337 5.337 3 C -0.046 4.046 4 C 0.153 3.847 5 C -0.266 4.266 6 C -0.043 4.043 7 C -0.226 4.226 8 C 0.058 3.942 9 N -0.368 5.368 10 C 0.312 3.688 11 O -0.450 6.450 12 C -0.035 4.035 13 H 0.135 0.865 14 N -0.362 5.362 15 C -0.158 4.158 16 C -0.044 4.044 17 C -0.572 4.572 18 H 0.045 0.955 19 C -0.195 4.195 20 N -0.594 5.594 21 Si 0.776 3.224 22 H -0.193 1.193 23 H -0.214 1.214 24 H -0.160 1.160 25 C 0.006 3.994 26 N -0.281 5.281 27 H 0.082 0.918 28 H 0.118 0.882 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.106 0.894 32 H 0.084 0.916 33 H 0.167 0.833 34 H 0.163 0.837 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.246 0.754 38 H 0.158 0.842 39 H 0.169 0.831 40 H 0.061 0.939 41 H 0.082 0.918 42 H 0.049 0.951 43 H 0.042 0.958 44 H 0.075 0.925 45 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -0.698 22.543 17.950 28.825 hybrid contribution -1.153 -1.530 -1.642 2.523 sum -1.851 21.013 16.308 26.663 Atomic orbital electron populations 1.21883 0.76654 1.04555 1.01977 1.46544 1.06345 1.02904 1.77903 1.21662 0.97603 0.83919 1.01399 1.18715 0.88621 0.86985 0.90346 1.21598 1.01992 0.91249 1.11790 1.21505 0.93239 0.98769 0.90806 1.20400 0.94668 0.95423 1.12111 1.19893 0.98168 0.93145 0.83041 1.46068 1.54572 1.26257 1.09941 1.20716 0.76831 0.80252 0.90980 1.90633 1.55327 1.52231 1.46846 1.21442 0.91283 0.98810 0.92002 0.86499 1.58755 1.34619 1.20349 1.22467 1.22012 0.97606 0.99747 0.96404 1.19507 0.95487 0.96629 0.92794 1.21447 1.01298 1.39053 0.95354 0.95467 1.26078 1.00057 0.94266 0.99079 1.70080 1.33491 1.43546 1.12277 0.85614 0.79108 0.80413 0.77241 1.19256 1.21449 1.16039 1.22586 1.00180 0.86032 0.90581 1.67237 1.06843 1.32051 1.21993 0.91831 0.88224 0.92084 0.93588 0.89446 0.91639 0.83329 0.83676 0.91411 0.90577 0.75408 0.84157 0.83093 0.93862 0.91788 0.95129 0.95812 0.92538 0.81414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.79 9.40 127.77 1.20 1.99 16 2 N -0.62 -9.60 3.39 -753.95 -2.56 -12.16 16 3 C 0.10 1.23 10.47 127.77 1.34 2.57 16 4 C 0.39 7.71 7.37 133.07 0.98 8.69 16 5 C -0.24 -4.26 9.34 22.50 0.21 -4.05 16 6 C -0.02 -0.31 9.85 22.44 0.22 -0.09 16 7 C -0.22 -4.14 5.27 -19.76 -0.10 -4.25 16 8 C 0.18 3.77 5.82 85.63 0.50 4.27 16 9 N -0.72 -16.76 5.55 -466.80 -2.59 -19.35 16 10 C 0.53 15.94 7.08 87.66 0.62 16.56 16 11 O -0.57 -21.15 16.25 -3.04 -0.05 -21.20 16 12 C 0.08 2.41 3.21 44.17 0.14 2.55 16 13 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 14 N -0.83 -25.30 8.94 -171.81 -1.54 -26.83 16 15 C -0.12 -4.30 4.78 30.59 0.15 -4.16 16 16 C -0.01 -0.29 3.81 29.85 0.11 -0.17 16 17 C -0.53 -29.91 9.66 25.60 0.25 -29.67 16 18 H 0.03 1.70 7.99 -2.91 -0.02 1.68 16 19 C 0.00 0.10 5.47 84.65 0.46 0.57 16 20 N -0.95 -59.32 13.96 21.45 0.30 -59.02 16 21 Si 0.95 42.66 27.47 68.60 1.88 44.54 16 22 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 23 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 24 H -0.24 -9.50 6.54 99.48 0.65 -8.85 16 25 C 0.16 3.17 10.84 84.62 0.92 4.09 16 26 N -0.56 -12.25 9.08 -193.26 -1.75 -14.00 16 27 H 0.06 0.48 8.11 -2.39 -0.02 0.47 16 28 H 0.10 0.43 7.79 -2.39 -0.02 0.41 16 29 H 0.06 0.52 7.73 -2.38 -0.02 0.50 16 30 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.09 0.64 7.92 -2.38 -0.02 0.63 16 32 H 0.06 1.03 7.30 -2.39 -0.02 1.01 16 33 H 0.15 1.99 6.71 -2.91 -0.02 1.97 16 34 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 35 H 0.07 1.51 8.09 -2.39 -0.02 1.49 16 36 H 0.08 1.58 8.09 -2.39 -0.02 1.57 16 37 H 0.41 8.34 8.46 -92.70 -0.78 7.55 16 38 H 0.35 11.01 8.58 -89.69 -0.77 10.24 16 39 H 0.35 10.15 7.55 -89.69 -0.68 9.47 16 40 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.03 1.26 7.20 -2.39 -0.02 1.24 16 43 H 0.02 0.98 6.30 -2.39 -0.02 0.96 16 44 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 45 H 0.17 2.64 8.06 -2.90 -0.02 2.61 16 Total: -1.00 -74.09 372.57 -0.57 -74.66 By element: Atomic # 1 Polarization: 35.70 SS G_CDS: -1.27 Total: 34.43 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: 7.00 Total: -1.08 kcal Atomic # 7 Polarization: -123.23 SS G_CDS: -8.14 Total: -131.36 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -0.05 Total: -21.20 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 1.88 Total: 44.54 kcal Total: -74.09 -0.57 -74.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424134915.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.834 kcal (2) G-P(sol) polarization free energy of solvation -74.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds