Wall clock time and date at job start Fri Apr 10 2020 17:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.47280 * 2 1 4 4 N 1.40090 * 126.03488 * 270.02348 * 3 2 1 5 5 C 1.30837 * 108.20714 * 179.97438 * 4 3 2 6 6 C 1.39872 * 108.19813 * 359.77731 * 5 4 3 7 7 C 1.34947 * 126.04427 * 89.99295 * 3 2 1 8 8 C 1.50706 * 126.12086 * 359.97438 * 7 3 2 9 9 C 1.53117 * 109.52023 * 264.87111 * 8 7 3 10 10 C 1.53047 * 109.27058 * 182.50841 * 9 8 7 11 11 N 1.46844 * 109.57713 * 59.08053 * 10 9 8 12 12 C 1.46906 * 111.00000 * 174.18705 * 11 10 9 13 13 C 1.50696 * 109.47625 * 294.21432 * 12 11 10 14 14 O 1.21295 * 119.99712 * 359.97438 * 13 12 11 15 15 N 1.34769 * 119.99887 * 179.97438 * 13 12 11 16 16 C 1.37099 * 119.99866 * 179.97438 * 15 13 12 17 17 H 1.08003 * 119.99978 * 0.02562 * 16 15 13 18 18 C 1.38954 * 120.00252 * 180.02562 * 16 15 13 19 19 N 1.31410 * 119.99961 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00121 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46723 * 90.00155 * 20 18 16 22 22 H 1.48501 * 109.47200 * 209.99660 * 20 18 16 23 23 H 1.48495 * 109.47379 * 330.00210 * 20 18 16 24 24 C 1.46837 * 111.20134 * 298.29250 * 11 10 9 25 25 C 1.53029 * 109.52587 * 61.73818 * 24 11 10 26 26 H 1.08997 * 109.47232 * 300.00393 * 1 2 3 27 27 H 1.08994 * 109.46781 * 60.00440 * 1 2 3 28 28 H 1.09000 * 109.46974 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47232 * 239.99607 * 2 1 3 30 30 H 1.09007 * 109.47007 * 119.99584 * 2 1 3 31 31 H 1.07995 * 125.89560 * 180.02562 * 5 4 3 32 32 H 1.08008 * 126.03632 * 180.23092 * 6 5 4 33 33 H 1.08994 * 109.52172 * 24.99791 * 8 7 3 34 34 H 1.09004 * 109.50541 * 302.37793 * 9 8 7 35 35 H 1.08995 * 109.50711 * 62.50575 * 9 8 7 36 36 H 1.09002 * 109.40854 * 299.06543 * 10 9 8 37 37 H 1.08999 * 109.45487 * 179.12586 * 10 9 8 38 38 H 1.09002 * 109.46362 * 54.21509 * 12 11 10 39 39 H 1.08994 * 109.47187 * 174.20846 * 12 11 10 40 40 H 0.97001 * 120.00821 * 0.02562 * 15 13 12 41 41 H 0.97001 * 120.00236 * 179.97438 * 19 18 16 42 42 H 1.09004 * 109.46139 * 301.72470 * 24 11 10 43 43 H 1.09000 * 109.45650 * 181.75360 * 24 11 10 44 44 H 1.09006 * 109.50668 * 180.87804 * 25 24 11 45 45 H 1.09001 * 109.53320 * 60.78343 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2927 2.1583 -1.1328 5 6 2.7075 3.3328 -0.7323 6 6 2.7059 3.3429 0.6664 7 6 2.2830 2.1299 1.0911 8 6 2.1284 1.6949 2.5258 9 6 0.7619 2.1427 3.0518 10 6 0.6361 1.7535 4.5266 11 7 1.7115 2.3907 5.2971 12 6 1.5413 2.1507 6.7364 13 6 0.2910 2.8414 7.2166 14 8 -0.3910 3.4721 6.4366 15 7 -0.0693 2.7584 8.5125 16 6 -1.2065 3.3872 8.9495 17 1 -1.8138 3.9488 8.2550 18 6 -1.5778 3.3021 10.2858 19 7 -0.8391 2.6184 11.1307 20 14 -3.1268 4.1596 10.8813 21 1 -4.2825 3.2350 10.7586 22 1 -2.9583 4.5554 12.3026 23 1 -3.3713 5.3696 10.0560 24 6 3.0318 1.9383 4.8406 25 6 3.2298 2.3344 3.3758 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 2.9970 4.1538 -1.3713 32 1 2.9937 4.1719 1.2961 33 1 2.2047 0.6094 2.5875 34 1 0.6705 3.2244 2.9528 35 1 -0.0264 1.6562 2.4775 36 1 0.7127 0.6705 4.6231 37 1 -0.3296 2.0847 4.9083 38 1 1.4573 1.0793 6.9185 39 1 2.4034 2.5442 7.2748 40 1 0.4763 2.2544 9.1364 41 1 -1.0981 2.5593 12.0636 42 1 3.0972 0.8544 4.9357 43 1 3.8060 2.4038 5.4506 44 1 4.2036 1.9848 3.0326 45 1 3.1787 3.4191 3.2814 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000434789477.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:19 Heat of formation + Delta-G solvation = 38.060504 kcal Electronic energy + Delta-G solvation = -25295.013807 eV Core-core repulsion = 21734.837495 eV Total energy + Delta-G solvation = -3560.176312 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.45186 -39.13994 -37.59250 -34.74166 -34.22179 -33.60268 -31.25424 -30.71839 -30.01642 -29.32382 -27.11407 -24.74196 -23.98841 -23.15386 -22.97447 -21.21830 -20.02451 -19.18830 -19.03334 -17.85449 -17.09003 -16.01388 -15.62232 -15.24401 -15.10905 -14.87559 -14.61894 -14.35326 -13.96279 -13.81281 -13.71133 -13.53850 -13.25320 -13.10079 -12.77388 -12.67017 -12.30667 -12.25928 -11.85122 -11.59492 -11.50842 -11.47790 -11.07225 -11.04918 -10.90957 -10.66387 -10.48315 -10.38052 -10.37107 -10.21169 -9.47457 -9.29748 -8.54040 -8.41736 -7.97163 -7.82654 -6.41571 -3.82216 1.81326 2.39160 2.81318 3.17683 3.26493 3.32492 3.90737 3.99166 4.24214 4.32080 4.37294 4.64991 4.70448 4.84328 4.90863 4.97049 5.06330 5.12127 5.24870 5.28598 5.31196 5.40898 5.47363 5.54316 5.60500 5.64111 5.69427 5.75928 5.79519 5.84903 5.91000 5.95593 6.03209 6.09989 6.25270 6.28730 6.44201 6.50608 6.62246 6.96056 7.31101 7.44313 7.55515 7.66897 8.07037 8.62352 9.18634 9.55179 10.07036 10.76250 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.026516 B = 0.002701 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.707734 B =10364.446510 C =10623.709309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.128 3.872 3 N -0.370 5.370 4 N -0.306 5.306 5 C 0.044 3.956 6 C -0.271 4.271 7 C 0.101 3.899 8 C -0.026 4.026 9 C -0.100 4.100 10 C 0.054 3.946 11 N -0.514 5.514 12 C 0.046 3.954 13 C 0.444 3.556 14 O -0.577 6.577 15 N -0.565 5.565 16 C -0.298 4.298 17 H 0.103 0.897 18 C 0.022 3.978 19 N -0.903 5.903 20 Si 0.929 3.071 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.269 1.269 24 C 0.055 3.945 25 C -0.101 4.101 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.180 0.820 32 H 0.147 0.853 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.062 0.938 36 H 0.020 0.980 37 H 0.107 0.893 38 H 0.046 0.954 39 H 0.089 0.911 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.028 0.972 43 H 0.077 0.923 44 H 0.067 0.933 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.881 -6.258 -17.221 20.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.006 3.994 3 N -0.153 5.153 4 N -0.126 5.126 5 C -0.141 4.141 6 C -0.300 4.300 7 C -0.026 4.026 8 C -0.047 4.047 9 C -0.138 4.138 10 C -0.073 4.073 11 N -0.239 5.239 12 C -0.085 4.085 13 C 0.229 3.771 14 O -0.461 6.461 15 N -0.202 5.202 16 C -0.427 4.427 17 H 0.121 0.879 18 C -0.180 4.180 19 N -0.544 5.544 20 Si 0.756 3.244 21 H -0.205 1.205 22 H -0.209 1.209 23 H -0.194 1.194 24 C -0.073 4.073 25 C -0.139 4.139 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.197 0.803 32 H 0.165 0.835 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.080 0.920 36 H 0.038 0.962 37 H 0.125 0.875 38 H 0.064 0.936 39 H 0.107 0.893 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.047 0.953 43 H 0.096 0.904 44 H 0.085 0.915 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 8.051 -6.247 -18.652 21.254 hybrid contribution -0.136 -0.308 1.619 1.653 sum 7.916 -6.556 -17.033 19.894 Atomic orbital electron populations 1.22239 0.94181 1.03116 1.03533 1.21625 0.95400 0.78292 1.04039 1.48669 1.51395 1.11900 1.03363 1.77311 1.22594 1.04583 1.08140 1.23800 0.99419 0.95696 0.95191 1.21247 1.15344 0.98602 0.94782 1.21115 0.99081 0.92349 0.90086 1.19948 0.97817 0.99893 0.87024 1.21613 0.93976 1.03016 0.95230 1.22250 0.97690 0.94798 0.92598 1.61489 1.01328 1.58774 1.02291 1.21839 0.99102 0.98613 0.88957 1.19752 0.87758 0.86221 0.83339 1.90486 1.55521 1.45687 1.54386 1.41875 1.24130 1.46783 1.07387 1.19695 1.01023 1.28398 0.93632 0.87919 1.25253 0.99356 0.97574 0.95773 1.69610 1.38937 1.41307 1.04559 0.85870 0.81084 0.79606 0.77815 1.20467 1.20942 1.19385 1.22108 0.91956 0.97514 0.95743 1.21575 0.96757 1.02198 0.93370 0.91519 0.91670 0.90534 0.88971 0.89144 0.80301 0.83526 0.90834 0.90117 0.91990 0.96162 0.87539 0.93589 0.89311 0.77516 0.91901 0.95338 0.90431 0.91468 0.90053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 10.24 37.16 0.38 -1.00 16 2 C 0.13 1.09 6.96 -4.04 -0.03 1.06 16 3 N -0.37 -4.32 3.61 -57.14 -0.21 -4.52 16 4 N -0.31 -3.97 12.58 30.62 0.39 -3.59 16 5 C 0.04 0.51 12.03 -17.36 -0.21 0.30 16 6 C -0.27 -3.17 9.97 -40.01 -0.40 -3.57 16 7 C 0.10 1.18 5.86 -82.26 -0.48 0.70 16 8 C -0.03 -0.29 2.45 -91.65 -0.22 -0.52 16 9 C -0.10 -1.31 5.37 -26.65 -0.14 -1.46 16 10 C 0.05 0.84 5.10 -3.83 -0.02 0.82 16 11 N -0.51 -8.19 4.40 -236.12 -1.04 -9.23 16 12 C 0.05 0.80 5.45 -4.97 -0.03 0.77 16 13 C 0.44 10.24 7.46 -10.99 -0.08 10.15 16 14 O -0.58 -15.15 13.90 5.54 0.08 -15.08 16 15 N -0.56 -14.10 5.29 -10.96 -0.06 -14.16 16 16 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16 17 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 18 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 19 N -0.90 -24.39 13.05 55.50 0.72 -23.67 16 20 Si 0.93 20.92 29.55 -169.99 -5.02 15.90 16 21 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 24 C 0.06 0.67 5.46 -3.84 -0.02 0.65 16 25 C -0.10 -1.09 5.02 -26.65 -0.13 -1.22 16 26 H 0.07 0.61 6.58 -51.93 -0.34 0.26 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.09 0.63 6.98 -51.92 -0.36 0.26 16 31 H 0.18 1.47 8.06 -52.49 -0.42 1.05 16 32 H 0.15 1.56 7.31 -52.48 -0.38 1.17 16 33 H 0.07 0.74 6.95 -51.93 -0.36 0.37 16 34 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.06 0.75 6.58 -51.93 -0.34 0.41 16 36 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.11 2.06 5.78 -51.93 -0.30 1.76 16 38 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 39 H 0.09 1.39 7.99 -51.93 -0.41 0.98 16 40 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16 41 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 42 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.08 0.87 8.02 -51.93 -0.42 0.46 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.08 0.95 7.17 -51.93 -0.37 0.57 16 LS Contribution 360.11 15.07 5.43 5.43 Total: -1.00 -32.07 360.11 -8.27 -40.34 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -6.93 Total: 9.75 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -1.63 Total: -1.18 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: -0.19 Total: -55.17 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: 0.08 Total: -15.08 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.07 -8.27 -40.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000434789477.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.403 kcal (2) G-P(sol) polarization free energy of solvation -32.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds