Wall clock time and date at job start Fri Apr 10 2020 17:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.47280 * 2 1 4 4 N 1.40090 * 126.03488 * 270.02348 * 3 2 1 5 5 C 1.30837 * 108.20714 * 179.97438 * 4 3 2 6 6 C 1.39872 * 108.19813 * 359.77731 * 5 4 3 7 7 C 1.34947 * 126.04427 * 89.99295 * 3 2 1 8 8 C 1.50706 * 126.12086 * 359.97438 * 7 3 2 9 9 C 1.53117 * 109.52023 * 264.87111 * 8 7 3 10 10 C 1.53047 * 109.27058 * 182.50841 * 9 8 7 11 11 N 1.46844 * 109.57713 * 59.08053 * 10 9 8 12 12 C 1.46906 * 111.00000 * 174.18705 * 11 10 9 13 13 C 1.50696 * 109.47625 * 294.21432 * 12 11 10 14 14 O 1.21295 * 119.99712 * 359.97438 * 13 12 11 15 15 N 1.34769 * 119.99887 * 179.97438 * 13 12 11 16 16 C 1.37099 * 119.99866 * 179.97438 * 15 13 12 17 17 H 1.08003 * 119.99978 * 0.02562 * 16 15 13 18 18 C 1.38954 * 120.00252 * 180.02562 * 16 15 13 19 19 N 1.31410 * 119.99961 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00121 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46723 * 90.00155 * 20 18 16 22 22 H 1.48501 * 109.47200 * 209.99660 * 20 18 16 23 23 H 1.48495 * 109.47379 * 330.00210 * 20 18 16 24 24 C 1.46837 * 111.20134 * 298.29250 * 11 10 9 25 25 C 1.53029 * 109.52587 * 61.73818 * 24 11 10 26 26 H 1.08997 * 109.47232 * 300.00393 * 1 2 3 27 27 H 1.08994 * 109.46781 * 60.00440 * 1 2 3 28 28 H 1.09000 * 109.46974 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47232 * 239.99607 * 2 1 3 30 30 H 1.09007 * 109.47007 * 119.99584 * 2 1 3 31 31 H 1.07995 * 125.89560 * 180.02562 * 5 4 3 32 32 H 1.08008 * 126.03632 * 180.23092 * 6 5 4 33 33 H 1.08994 * 109.52172 * 24.99791 * 8 7 3 34 34 H 1.09004 * 109.50541 * 302.37793 * 9 8 7 35 35 H 1.08995 * 109.50711 * 62.50575 * 9 8 7 36 36 H 1.09002 * 109.40854 * 299.06543 * 10 9 8 37 37 H 1.08999 * 109.45487 * 179.12586 * 10 9 8 38 38 H 1.09002 * 109.46362 * 54.21509 * 12 11 10 39 39 H 1.08994 * 109.47187 * 174.20846 * 12 11 10 40 40 H 0.97001 * 120.00821 * 0.02562 * 15 13 12 41 41 H 0.97001 * 120.00236 * 179.97438 * 19 18 16 42 42 H 1.09004 * 109.46139 * 301.72470 * 24 11 10 43 43 H 1.09000 * 109.45650 * 181.75360 * 24 11 10 44 44 H 1.09006 * 109.50668 * 180.87804 * 25 24 11 45 45 H 1.09001 * 109.53320 * 60.78343 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2927 2.1583 -1.1328 5 6 2.7075 3.3328 -0.7323 6 6 2.7059 3.3429 0.6664 7 6 2.2830 2.1299 1.0911 8 6 2.1284 1.6949 2.5258 9 6 0.7619 2.1427 3.0518 10 6 0.6361 1.7535 4.5266 11 7 1.7115 2.3907 5.2971 12 6 1.5413 2.1507 6.7364 13 6 0.2910 2.8414 7.2166 14 8 -0.3910 3.4721 6.4366 15 7 -0.0693 2.7584 8.5125 16 6 -1.2065 3.3872 8.9495 17 1 -1.8138 3.9488 8.2550 18 6 -1.5778 3.3021 10.2858 19 7 -0.8391 2.6184 11.1307 20 14 -3.1268 4.1596 10.8813 21 1 -4.2825 3.2350 10.7586 22 1 -2.9583 4.5554 12.3026 23 1 -3.3713 5.3696 10.0560 24 6 3.0318 1.9383 4.8406 25 6 3.2298 2.3344 3.3758 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 2.9970 4.1538 -1.3713 32 1 2.9937 4.1719 1.2961 33 1 2.2047 0.6094 2.5875 34 1 0.6705 3.2244 2.9528 35 1 -0.0264 1.6562 2.4775 36 1 0.7127 0.6705 4.6231 37 1 -0.3296 2.0847 4.9083 38 1 1.4573 1.0793 6.9185 39 1 2.4034 2.5442 7.2748 40 1 0.4763 2.2544 9.1364 41 1 -1.0981 2.5593 12.0636 42 1 3.0972 0.8544 4.9357 43 1 3.8060 2.4038 5.4506 44 1 4.2036 1.9848 3.0326 45 1 3.1787 3.4191 3.2814 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000434789477.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:18 Heat of formation + Delta-G solvation = 16.333590 kcal Electronic energy + Delta-G solvation = -25295.955956 eV Core-core repulsion = 21734.837495 eV Total energy + Delta-G solvation = -3561.118462 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.31502 -40.56597 -39.11196 -36.01433 -35.48075 -34.92416 -33.23981 -31.77305 -30.98815 -30.18202 -28.51710 -26.44389 -24.79497 -24.26635 -24.06169 -22.14864 -21.02747 -20.89525 -19.94508 -19.84224 -17.94093 -17.69917 -16.80029 -16.49759 -16.30870 -16.03813 -15.87926 -15.63243 -15.34420 -15.14232 -14.95449 -14.46122 -14.35724 -14.19937 -13.88144 -13.66331 -13.46176 -13.39959 -13.11535 -12.96830 -12.82722 -12.67796 -12.39998 -12.30734 -12.12299 -12.03446 -11.93146 -11.65138 -11.56035 -11.37357 -11.32509 -10.24956 -10.13701 -9.96504 -9.41402 -9.11332 -8.44472 -5.92513 0.93614 1.38613 1.42351 1.54892 1.63086 1.93942 2.09637 2.29979 2.81539 3.22888 3.41110 3.48693 3.64307 3.80014 3.91383 4.09321 4.15857 4.18298 4.25611 4.31369 4.36517 4.41846 4.52153 4.54847 4.59527 4.64184 4.70231 4.74581 4.75193 4.86624 4.97408 5.00592 5.03483 5.13939 5.16256 5.23273 5.31001 5.43149 5.49656 5.79288 5.94296 6.14422 6.15769 6.33114 6.64193 6.80418 7.16270 7.60641 8.16918 8.73044 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.026516 B = 0.002701 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.707734 B =10364.446510 C =10623.709309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.119 3.881 3 N -0.374 5.374 4 N -0.334 5.334 5 C 0.040 3.960 6 C -0.284 4.284 7 C 0.096 3.904 8 C -0.015 4.015 9 C -0.090 4.090 10 C 0.059 3.941 11 N -0.535 5.535 12 C 0.058 3.942 13 C 0.442 3.558 14 O -0.614 6.614 15 N -0.576 5.576 16 C -0.330 4.330 17 H 0.078 0.922 18 C -0.013 4.013 19 N -0.922 5.922 20 Si 0.990 3.010 21 H -0.271 1.271 22 H -0.271 1.271 23 H -0.274 1.274 24 C 0.056 3.944 25 C -0.096 4.096 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.100 0.900 29 H 0.102 0.898 30 H 0.111 0.889 31 H 0.204 0.796 32 H 0.152 0.848 33 H 0.093 0.907 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.038 0.962 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.111 0.889 40 H 0.396 0.604 41 H 0.277 0.723 42 H 0.047 0.953 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.124 -7.484 -17.414 21.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.001 4.001 3 N -0.157 5.157 4 N -0.155 5.155 5 C -0.145 4.145 6 C -0.313 4.313 7 C -0.032 4.032 8 C -0.035 4.035 9 C -0.129 4.129 10 C -0.069 4.069 11 N -0.260 5.260 12 C -0.073 4.073 13 C 0.229 3.771 14 O -0.500 6.500 15 N -0.214 5.214 16 C -0.459 4.459 17 H 0.096 0.904 18 C -0.213 4.213 19 N -0.563 5.563 20 Si 0.814 3.186 21 H -0.197 1.197 22 H -0.196 1.196 23 H -0.199 1.199 24 C -0.071 4.071 25 C -0.134 4.134 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.119 0.881 29 H 0.120 0.880 30 H 0.129 0.871 31 H 0.221 0.779 32 H 0.170 0.830 33 H 0.111 0.889 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.056 0.944 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.129 0.871 40 H 0.229 0.771 41 H 0.086 0.914 42 H 0.065 0.935 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.318 -7.497 -18.852 22.326 hybrid contribution -0.516 0.073 1.609 1.691 sum 8.802 -7.424 -17.243 20.735 Atomic orbital electron populations 1.22198 0.94044 1.04224 1.02053 1.21928 0.95505 0.77143 1.05539 1.48940 1.51067 1.12735 1.02921 1.77264 1.23622 1.05425 1.09237 1.24256 0.98716 0.95978 0.95561 1.21475 1.15693 0.98988 0.95173 1.21217 0.99106 0.92557 0.90362 1.19846 0.96246 1.00928 0.86530 1.21467 0.95966 1.01406 0.94011 1.22080 0.95660 0.95577 0.93582 1.61443 1.03214 1.59988 1.01390 1.21714 0.96344 0.99009 0.90221 1.20838 0.88868 0.85100 0.82284 1.90470 1.57187 1.47114 1.55186 1.41945 1.23881 1.47263 1.08309 1.19634 1.02433 1.29840 0.94042 0.90430 1.25993 1.02032 0.97875 0.95372 1.69667 1.40028 1.41681 1.04913 0.84967 0.77682 0.78381 0.77561 1.19692 1.19601 1.19867 1.22216 0.89762 0.98731 0.96435 1.21552 0.97697 1.01564 0.92569 0.92810 0.93216 0.88148 0.88018 0.87104 0.77923 0.83007 0.88912 0.92693 0.91379 0.94402 0.92089 0.91481 0.87108 0.77052 0.91378 0.93458 0.89222 0.89168 0.91221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.45 10.24 71.98 0.74 -1.72 16 2 C 0.12 1.78 6.96 86.38 0.60 2.38 16 3 N -0.37 -8.16 3.61 -334.69 -1.21 -9.37 16 4 N -0.33 -8.36 12.58 -57.02 -0.72 -9.08 16 5 C 0.04 0.87 12.03 85.24 1.03 1.89 16 6 C -0.28 -6.36 9.97 21.99 0.22 -6.14 16 7 C 0.10 2.09 5.86 41.41 0.24 2.34 16 8 C -0.02 -0.30 2.45 -11.46 -0.03 -0.33 16 9 C -0.09 -2.32 5.37 30.65 0.16 -2.16 16 10 C 0.06 1.80 5.10 86.33 0.44 2.24 16 11 N -0.53 -16.33 4.40 -900.95 -3.96 -20.30 16 12 C 0.06 1.94 5.45 85.55 0.47 2.40 16 13 C 0.44 20.68 7.46 87.66 0.65 21.34 16 14 O -0.61 -33.47 13.90 -3.08 -0.04 -33.51 16 15 N -0.58 -29.30 5.29 -306.99 -1.62 -30.92 16 16 C -0.33 -18.66 9.68 84.04 0.81 -17.85 16 17 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 18 C -0.01 -0.70 5.50 84.93 0.47 -0.24 16 19 N -0.92 -49.59 13.05 21.66 0.28 -49.30 16 20 Si 0.99 42.96 29.55 68.60 2.03 44.98 16 21 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 22 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 24 C 0.06 1.18 5.46 86.32 0.47 1.65 16 25 C -0.10 -1.82 5.02 30.64 0.15 -1.66 16 26 H 0.05 0.93 6.58 -2.39 -0.02 0.91 16 27 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.11 1.19 6.98 -2.38 -0.02 1.17 16 31 H 0.20 3.08 8.06 -2.91 -0.02 3.06 16 32 H 0.15 3.11 7.31 -2.91 -0.02 3.09 16 33 H 0.09 1.52 6.95 -2.39 -0.02 1.50 16 34 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 35 H 0.07 1.64 6.58 -2.39 -0.02 1.63 16 36 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.06 2.44 5.78 -2.39 -0.01 2.43 16 38 H 0.07 1.98 8.12 -2.39 -0.02 1.96 16 39 H 0.11 3.22 7.99 -2.39 -0.02 3.20 16 40 H 0.40 19.07 7.90 -92.71 -0.73 18.34 16 41 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 42 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 43 H 0.09 1.71 8.02 -2.39 -0.02 1.69 16 44 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 45 H 0.07 1.51 7.17 -2.39 -0.02 1.49 16 Total: -1.00 -70.95 360.11 1.45 -69.51 By element: Atomic # 1 Polarization: 33.57 SS G_CDS: 0.26 Total: 33.84 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: 6.43 Total: 4.15 kcal Atomic # 7 Polarization: -111.74 SS G_CDS: -7.23 Total: -118.97 kcal Atomic # 8 Polarization: -33.47 SS G_CDS: -0.04 Total: -33.51 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -70.95 1.45 -69.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000434789477.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.840 kcal (2) G-P(sol) polarization free energy of solvation -70.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds