Wall clock time and date at job start Fri Apr 10 2020 17:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40152 * 125.93177 * 2 1 4 4 H 0.96996 * 126.25367 * 359.97438 * 3 2 1 5 5 C 1.37502 * 107.49540 * 180.13005 * 3 2 1 6 6 N 1.33657 * 126.22071 * 179.85095 * 5 3 2 7 7 C 1.32706 * 119.99658 * 185.72466 * 6 5 3 8 8 O 1.21630 * 120.00534 * 354.50415 * 7 6 5 9 9 C 1.50707 * 119.99823 * 174.51139 * 7 6 5 10 10 S 1.81006 * 109.46940 * 179.97438 * 9 7 6 11 11 C 1.76198 * 99.99551 * 179.97438 * 10 9 7 12 12 H 1.07997 * 120.00766 * 0.02562 * 11 10 9 13 13 C 1.38808 * 119.99625 * 179.97438 * 11 10 9 14 14 N 1.31625 * 119.99967 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99721 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47449 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46897 * 120.00281 * 15 13 11 18 18 H 1.48499 * 109.47385 * 239.99959 * 15 13 11 19 19 C 1.39986 * 107.55221 * 359.58414 * 5 3 2 20 20 C 1.36522 * 108.22291 * 0.26719 * 19 5 3 21 21 O 1.34910 * 125.69846 * 179.97438 * 20 19 5 22 22 C 1.42900 * 117.00305 * 4.42347 * 21 20 19 23 23 F 1.39902 * 109.46837 * 303.57694 * 22 21 20 24 24 F 1.39895 * 109.47044 * 63.57427 * 22 21 20 25 25 H 1.08998 * 109.47009 * 265.30151 * 1 2 3 26 26 H 1.08993 * 109.47659 * 25.30863 * 1 2 3 27 27 H 1.08999 * 109.46830 * 145.31220 * 1 2 3 28 28 H 1.09001 * 109.46659 * 299.99625 * 9 7 6 29 29 H 1.08999 * 109.47167 * 59.99981 * 9 7 6 30 30 H 0.96997 * 119.99708 * 179.97438 * 14 13 11 31 31 H 1.08003 * 125.88918 * 180.26174 * 19 5 3 32 32 H 1.08997 * 109.47061 * 183.57589 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2875 1.1348 0.0000 4 1 1.9907 2.0583 -0.0003 5 6 3.5919 0.7000 -0.0030 6 7 4.6821 1.4731 -0.0068 7 6 5.8845 0.9240 -0.1240 8 8 6.0026 -0.2866 -0.1274 9 6 7.1038 1.8003 -0.2527 10 16 8.5804 0.7628 -0.3934 11 6 9.8184 2.0094 -0.5275 12 1 9.5391 3.0524 -0.5069 13 6 11.1529 1.6507 -0.6585 14 7 11.4934 0.3795 -0.6831 15 14 12.4654 2.9722 -0.8014 16 1 11.8269 4.3120 -0.7479 17 1 13.4276 2.8377 0.3217 18 1 13.1853 2.8176 -2.0910 19 6 3.5703 -0.6997 0.0049 20 6 2.2671 -1.1066 0.0065 21 8 1.8422 -2.3870 0.0130 22 6 2.8427 -3.4021 0.1168 23 9 3.7681 -3.2527 -0.9217 24 9 3.4991 -3.2857 1.3467 25 1 -0.3633 -0.0842 1.0242 26 1 -0.3634 0.9289 -0.4393 27 1 -0.3633 -0.8450 -0.5849 28 1 7.0110 2.4234 -1.1423 29 1 7.1893 2.4357 0.6288 30 1 12.4260 0.1290 -0.7750 31 1 4.4355 -1.3462 0.0089 32 1 2.3733 -4.3833 0.0469 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490912576.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:33 Heat of formation + Delta-G solvation = -50.703142 kcal Electronic energy + Delta-G solvation = -22560.558744 eV Core-core repulsion = 18515.671842 eV Total energy + Delta-G solvation = -4044.886903 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 307.059 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.55953 -47.61765 -41.83800 -39.10748 -38.35353 -34.32613 -32.23883 -31.67191 -31.25676 -29.01251 -26.97233 -26.10519 -25.26609 -22.52359 -22.11580 -19.85008 -18.68082 -18.31943 -18.26679 -17.74113 -17.14948 -16.50440 -16.45548 -15.74991 -14.96481 -14.63326 -14.55794 -14.46674 -14.13116 -13.93077 -13.88181 -13.73557 -13.49475 -13.31414 -13.17742 -12.91207 -12.41168 -12.33750 -11.58933 -10.92973 -10.82297 -10.58409 -10.38604 -9.59761 -9.50692 -9.44512 -8.88778 -8.52779 -7.93857 -7.59153 -6.24905 -6.02802 -3.69860 0.51793 0.88389 2.04294 2.41573 3.08921 3.29742 3.34095 3.37131 3.43363 3.73745 3.85974 4.20443 4.24377 4.26462 4.40726 4.51492 4.62031 4.77737 4.88726 5.04777 5.31787 5.38090 5.76624 6.14256 6.25702 6.40348 6.46409 6.66145 6.96444 7.33999 7.79563 8.00599 8.55895 9.24675 9.42514 11.04874 Molecular weight = 307.06amu Principal moments of inertia in cm(-1) A = 0.024770 B = 0.003259 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.119005 B = 8588.286362 C = 9529.879500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.382 5.382 3 N -0.471 5.471 4 H 0.453 0.547 5 C 0.495 3.505 6 N -0.667 5.667 7 C 0.516 3.484 8 O -0.537 6.537 9 C -0.121 4.121 10 S -0.077 6.077 11 C -0.526 4.526 12 H 0.072 0.928 13 C 0.071 3.929 14 N -0.870 5.870 15 Si 0.917 3.083 16 H -0.272 1.272 17 H -0.281 1.281 18 H -0.281 1.281 19 C -0.346 4.346 20 C 0.348 3.652 21 O -0.317 6.317 22 C 0.431 3.569 23 F -0.179 7.179 24 F -0.185 7.185 25 H 0.077 0.923 26 H 0.092 0.908 27 H 0.099 0.901 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.265 0.735 31 H 0.203 0.797 32 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.807 -6.025 1.602 30.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.181 5.181 3 N -0.206 5.206 4 H 0.303 0.697 5 C 0.242 3.758 6 N -0.425 5.425 7 C 0.302 3.698 8 O -0.415 6.415 9 C -0.271 4.271 10 S 0.150 5.850 11 C -0.675 4.675 12 H 0.090 0.910 13 C -0.138 4.138 14 N -0.506 5.506 15 Si 0.744 3.256 16 H -0.196 1.196 17 H -0.207 1.207 18 H -0.207 1.207 19 C -0.378 4.378 20 C 0.186 3.814 21 O -0.229 6.229 22 C 0.342 3.658 23 F -0.161 7.161 24 F -0.166 7.166 25 H 0.095 0.905 26 H 0.110 0.890 27 H 0.117 0.883 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.075 0.925 31 H 0.220 0.780 32 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -29.807 -7.132 1.622 30.691 hybrid contribution 0.697 2.080 -0.056 2.195 sum -29.110 -5.052 1.567 29.586 Atomic orbital electron populations 1.22129 0.72035 1.05384 1.04046 1.45523 1.03033 0.96123 1.73443 1.44107 1.00152 1.00242 1.76070 0.69712 1.18924 0.84180 0.88820 0.83893 1.68992 0.96813 1.37450 1.39263 1.20596 0.87427 0.87373 0.74360 1.90548 1.88359 1.17122 1.45498 1.23151 0.96873 1.02488 1.04632 1.85211 0.93766 1.10421 1.95650 1.22942 0.93297 0.94109 1.57147 0.90971 1.24983 0.97829 0.96024 0.94930 1.70051 1.17775 1.15347 1.47425 0.86142 0.80698 0.81070 0.77732 1.19624 1.20720 1.20720 1.23022 0.94927 0.97131 1.22706 1.18351 0.88920 0.79625 0.94510 1.86103 1.37897 1.11411 1.87537 1.23516 0.78274 0.91095 0.72923 1.93218 1.68273 1.95982 1.58597 1.93187 1.82507 1.96322 1.44605 0.90453 0.88961 0.88275 0.89515 0.89466 0.92522 0.78011 0.78816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.29 11.42 59.85 0.68 0.98 16 2 N -0.38 -3.23 4.06 -67.94 -0.28 -3.50 16 3 N -0.47 -4.92 7.37 31.22 0.23 -4.69 16 4 H 0.45 3.22 8.96 -182.56 -1.64 1.58 16 5 C 0.50 8.10 8.04 -155.06 -1.25 6.85 16 6 N -0.67 -13.37 10.52 -11.75 -0.12 -13.49 16 7 C 0.52 12.27 7.72 -11.90 -0.09 12.18 16 8 O -0.54 -13.79 12.79 5.25 0.07 -13.72 16 9 C -0.12 -3.01 6.23 36.01 0.22 -2.79 16 10 S -0.08 -2.32 20.57 -107.50 -2.21 -4.54 16 11 C -0.53 -16.29 9.50 30.94 0.29 -16.00 16 12 H 0.07 2.14 7.80 -52.49 -0.41 1.73 16 13 C 0.07 2.15 5.49 -17.43 -0.10 2.06 16 14 N -0.87 -27.69 13.22 55.49 0.73 -26.95 16 15 Si 0.92 22.76 29.55 -169.99 -5.02 17.74 16 16 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 C -0.35 -5.54 7.75 -39.55 -0.31 -5.85 16 20 C 0.35 3.90 7.49 -16.01 -0.12 3.78 16 21 O -0.32 -2.57 10.39 -16.45 -0.17 -2.74 16 22 C 0.43 3.22 6.00 101.05 0.61 3.83 16 23 F -0.18 -2.07 15.46 2.25 0.03 -2.04 16 24 F -0.18 -1.99 16.63 2.25 0.04 -1.95 16 25 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 26 H 0.09 0.07 8.14 -51.93 -0.42 -0.35 16 27 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 28 H 0.09 2.07 8.14 -51.92 -0.42 1.65 16 29 H 0.09 2.09 8.14 -51.92 -0.42 1.67 16 30 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 31 H 0.20 3.91 4.21 -52.48 -0.22 3.68 16 32 H 0.20 0.20 8.14 -51.93 -0.42 -0.22 16 LS Contribution 309.65 15.07 4.67 4.67 Total: -1.00 -42.53 309.65 -6.03 -48.55 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: -3.94 Total: -2.37 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: -0.05 Total: 5.04 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: 0.56 Total: -48.64 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.10 Total: -16.46 kcal Atomic # 9 Polarization: -4.07 SS G_CDS: 0.07 Total: -3.99 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Atomic # 16 Polarization: -2.32 SS G_CDS: -2.21 Total: -4.54 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -42.53 -6.03 -48.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490912576.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.149 kcal (2) G-P(sol) polarization free energy of solvation -42.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds