Wall clock time and date at job start Fri Apr 10 2020 17:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40152 * 125.93177 * 2 1 4 4 H 0.96996 * 126.25367 * 359.97438 * 3 2 1 5 5 C 1.37502 * 107.49540 * 180.13005 * 3 2 1 6 6 N 1.33657 * 126.22071 * 179.85095 * 5 3 2 7 7 C 1.32706 * 119.99658 * 185.72466 * 6 5 3 8 8 O 1.21630 * 120.00534 * 354.50415 * 7 6 5 9 9 C 1.50707 * 119.99823 * 174.51139 * 7 6 5 10 10 S 1.81006 * 109.46940 * 179.97438 * 9 7 6 11 11 C 1.76198 * 99.99551 * 179.97438 * 10 9 7 12 12 H 1.07997 * 120.00766 * 0.02562 * 11 10 9 13 13 C 1.38808 * 119.99625 * 179.97438 * 11 10 9 14 14 N 1.31625 * 119.99967 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99721 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47449 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46897 * 120.00281 * 15 13 11 18 18 H 1.48499 * 109.47385 * 239.99959 * 15 13 11 19 19 C 1.39986 * 107.55221 * 359.58414 * 5 3 2 20 20 C 1.36522 * 108.22291 * 0.26719 * 19 5 3 21 21 O 1.34910 * 125.69846 * 179.97438 * 20 19 5 22 22 C 1.42900 * 117.00305 * 4.42347 * 21 20 19 23 23 F 1.39902 * 109.46837 * 303.57694 * 22 21 20 24 24 F 1.39895 * 109.47044 * 63.57427 * 22 21 20 25 25 H 1.08998 * 109.47009 * 265.30151 * 1 2 3 26 26 H 1.08993 * 109.47659 * 25.30863 * 1 2 3 27 27 H 1.08999 * 109.46830 * 145.31220 * 1 2 3 28 28 H 1.09001 * 109.46659 * 299.99625 * 9 7 6 29 29 H 1.08999 * 109.47167 * 59.99981 * 9 7 6 30 30 H 0.96997 * 119.99708 * 179.97438 * 14 13 11 31 31 H 1.08003 * 125.88918 * 180.26174 * 19 5 3 32 32 H 1.08997 * 109.47061 * 183.57589 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2875 1.1348 0.0000 4 1 1.9907 2.0583 -0.0003 5 6 3.5919 0.7000 -0.0030 6 7 4.6821 1.4731 -0.0068 7 6 5.8845 0.9240 -0.1240 8 8 6.0026 -0.2866 -0.1274 9 6 7.1038 1.8003 -0.2527 10 16 8.5804 0.7628 -0.3934 11 6 9.8184 2.0094 -0.5275 12 1 9.5391 3.0524 -0.5069 13 6 11.1529 1.6507 -0.6585 14 7 11.4934 0.3795 -0.6831 15 14 12.4654 2.9722 -0.8014 16 1 11.8269 4.3120 -0.7479 17 1 13.4276 2.8377 0.3217 18 1 13.1853 2.8176 -2.0910 19 6 3.5703 -0.6997 0.0049 20 6 2.2671 -1.1066 0.0065 21 8 1.8422 -2.3870 0.0130 22 6 2.8427 -3.4021 0.1168 23 9 3.7681 -3.2527 -0.9217 24 9 3.4991 -3.2857 1.3467 25 1 -0.3633 -0.0842 1.0242 26 1 -0.3634 0.9289 -0.4393 27 1 -0.3633 -0.8450 -0.5849 28 1 7.0110 2.4234 -1.1423 29 1 7.1893 2.4357 0.6288 30 1 12.4260 0.1290 -0.7750 31 1 4.4355 -1.3462 0.0089 32 1 2.3733 -4.3833 0.0469 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490912576.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:33 Heat of formation + Delta-G solvation = -86.522085 kcal Electronic energy + Delta-G solvation = -22562.111970 eV Core-core repulsion = 18515.671842 eV Total energy + Delta-G solvation = -4046.440129 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 307.059 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.31754 -48.40831 -42.87703 -40.28794 -39.57038 -35.43933 -34.56524 -32.86277 -32.27867 -30.71696 -27.80090 -27.61241 -26.81297 -23.74658 -23.01378 -21.20488 -19.62040 -19.52660 -19.07022 -19.05110 -18.57322 -17.65266 -17.34113 -16.87713 -16.85446 -16.26332 -16.12503 -15.73665 -15.31605 -15.11003 -14.85190 -14.72871 -14.61905 -14.41879 -14.14350 -14.03638 -13.59284 -13.29006 -13.18368 -13.11073 -12.87732 -12.56844 -11.67736 -11.46942 -11.13106 -11.03761 -10.48716 -10.28580 -10.07319 -8.86059 -8.61399 -8.31945 -6.09992 -0.33024 -0.23291 1.08889 1.20360 1.33889 1.42456 1.52165 1.68659 2.30590 2.37767 2.56211 2.65867 3.00744 3.24925 3.34991 3.53150 3.60913 3.71278 3.74646 4.25462 4.35491 4.43375 4.44614 4.64153 4.64932 4.86357 5.18303 5.36579 5.43426 5.84962 6.22599 6.24881 6.56040 7.07861 7.67617 8.78165 Molecular weight = 307.06amu Principal moments of inertia in cm(-1) A = 0.024770 B = 0.003259 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.119005 B = 8588.286362 C = 9529.879500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.347 5.347 3 N -0.442 5.442 4 H 0.472 0.528 5 C 0.478 3.522 6 N -0.690 5.690 7 C 0.507 3.493 8 O -0.580 6.580 9 C -0.096 4.096 10 S -0.154 6.154 11 C -0.548 4.548 12 H 0.076 0.924 13 C 0.012 3.988 14 N -0.911 5.911 15 Si 1.004 2.996 16 H -0.260 1.260 17 H -0.270 1.270 18 H -0.269 1.269 19 C -0.398 4.398 20 C 0.381 3.619 21 O -0.293 6.293 22 C 0.420 3.580 23 F -0.207 7.207 24 F -0.207 7.207 25 H 0.102 0.898 26 H 0.123 0.877 27 H 0.123 0.877 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.272 0.728 31 H 0.166 0.834 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.315 -5.324 1.570 33.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.144 5.144 3 N -0.176 5.176 4 H 0.326 0.674 5 C 0.228 3.772 6 N -0.453 5.453 7 C 0.292 3.708 8 O -0.462 6.462 9 C -0.247 4.247 10 S 0.073 5.927 11 C -0.695 4.695 12 H 0.094 0.906 13 C -0.192 4.192 14 N -0.547 5.547 15 Si 0.825 3.175 16 H -0.184 1.184 17 H -0.195 1.195 18 H -0.195 1.195 19 C -0.431 4.431 20 C 0.212 3.788 21 O -0.203 6.203 22 C 0.332 3.668 23 F -0.188 7.188 24 F -0.188 7.188 25 H 0.120 0.880 26 H 0.142 0.858 27 H 0.141 0.859 28 H 0.110 0.890 29 H 0.109 0.891 30 H 0.081 0.919 31 H 0.183 0.817 32 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -33.492 -6.396 1.597 34.134 hybrid contribution 1.285 1.691 -0.028 2.124 sum -32.207 -4.705 1.569 32.587 Atomic orbital electron populations 1.22885 0.67475 1.08220 1.06555 1.46291 1.04605 0.94523 1.69021 1.44095 0.98811 1.01789 1.72893 0.67411 1.18888 0.85191 0.89170 0.83970 1.68775 0.96423 1.37311 1.42766 1.20402 0.88489 0.86659 0.75210 1.90547 1.88802 1.18070 1.48760 1.22958 0.95237 1.01592 1.04961 1.85311 0.97490 1.13933 1.95965 1.23235 0.94000 0.94035 1.58266 0.90562 1.26188 1.00376 0.98954 0.93711 1.70205 1.18793 1.17947 1.47799 0.84843 0.76787 0.77549 0.78315 1.18397 1.19503 1.19458 1.22514 0.96285 0.96960 1.27313 1.18235 0.87967 0.81473 0.91150 1.86211 1.37775 1.09783 1.86576 1.24924 0.77851 0.92877 0.71105 1.93170 1.69677 1.96139 1.59845 1.93145 1.83210 1.96436 1.46054 0.87959 0.85840 0.85861 0.88998 0.89078 0.91928 0.81708 0.71574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.03 11.42 127.77 1.46 1.43 16 2 N -0.35 -4.51 4.06 -479.80 -1.95 -6.46 16 3 N -0.44 -8.16 7.37 -55.13 -0.41 -8.57 16 4 H 0.47 5.20 8.96 -213.29 -1.91 3.29 16 5 C 0.48 15.82 8.04 133.40 1.07 16.90 16 6 N -0.69 -28.88 10.52 -310.48 -3.26 -32.14 16 7 C 0.51 25.76 7.72 87.98 0.68 26.44 16 8 O -0.58 -32.37 12.79 -4.13 -0.05 -32.43 16 9 C -0.10 -5.10 6.23 71.24 0.44 -4.66 16 10 S -0.15 -9.84 20.57 -56.49 -1.16 -11.00 16 11 C -0.55 -35.03 9.50 67.96 0.65 -34.39 16 12 H 0.08 4.64 7.80 -2.91 -0.02 4.62 16 13 C 0.01 0.75 5.49 84.86 0.47 1.21 16 14 N -0.91 -59.65 13.22 21.65 0.29 -59.36 16 15 Si 1.00 47.21 29.55 68.60 2.03 49.23 16 16 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 17 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 18 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 19 C -0.40 -13.12 7.75 22.29 0.17 -12.94 16 20 C 0.38 7.74 7.49 83.54 0.63 8.36 16 21 O -0.29 -3.81 10.39 -81.78 -0.85 -4.66 16 22 C 0.42 5.53 6.00 113.37 0.68 6.21 16 23 F -0.21 -4.89 15.46 44.97 0.70 -4.19 16 24 F -0.21 -4.45 16.63 44.97 0.75 -3.70 16 25 H 0.10 -0.31 8.14 -2.39 -0.02 -0.33 16 26 H 0.12 -0.63 8.14 -2.39 -0.02 -0.65 16 27 H 0.12 -0.41 8.14 -2.39 -0.02 -0.43 16 28 H 0.09 4.63 8.14 -2.39 -0.02 4.62 16 29 H 0.09 4.62 8.14 -2.40 -0.02 4.60 16 30 H 0.27 16.30 8.31 -92.71 -0.77 15.53 16 31 H 0.17 6.93 4.21 -2.91 -0.01 6.92 16 32 H 0.27 -0.59 8.14 -2.39 -0.02 -0.61 16 Total: -1.00 -102.47 309.65 1.60 -100.86 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -0.71 Total: 3.85 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: 6.24 Total: 8.56 kcal Atomic # 7 Polarization: -101.20 SS G_CDS: -5.33 Total: -106.53 kcal Atomic # 8 Polarization: -36.18 SS G_CDS: -0.90 Total: -37.08 kcal Atomic # 9 Polarization: -9.34 SS G_CDS: 1.44 Total: -7.89 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.23 kcal Atomic # 16 Polarization: -9.84 SS G_CDS: -1.16 Total: -11.00 kcal Total: -102.47 1.60 -100.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490912576.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.340 kcal (2) G-P(sol) polarization free energy of solvation -102.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds