Wall clock time and date at job start Fri Apr 10 2020 17:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21318 * 120.00115 * 2 1 4 4 C 1.46619 * 119.99810 * 180.02562 * 2 1 3 5 5 C 1.38626 * 126.51543 * 274.70334 * 4 2 1 6 6 C 1.50700 * 125.82322 * 359.71481 * 5 4 2 7 7 N 1.34101 * 108.34971 * 179.97438 * 5 4 2 8 8 H 0.96996 * 125.35427 * 179.97438 * 7 5 4 9 9 C 1.37844 * 109.30311 * 359.97438 * 7 5 4 10 10 C 1.46850 * 125.79889 * 180.02562 * 9 7 5 11 11 O 1.21675 * 119.99659 * 179.97438 * 10 9 7 12 12 N 1.34772 * 120.00379 * 359.97407 * 10 9 7 13 13 C 1.46499 * 120.00245 * 179.97438 * 12 10 9 14 14 C 1.50701 * 109.47039 * 180.02562 * 13 12 10 15 15 O 1.21292 * 120.00118 * 0.02562 * 14 13 12 16 16 N 1.34778 * 119.99983 * 180.02562 * 14 13 12 17 17 C 1.37094 * 120.00119 * 180.02562 * 16 14 13 18 18 H 1.08006 * 119.99881 * 359.97438 * 17 16 14 19 19 C 1.38950 * 120.00305 * 180.02562 * 17 16 14 20 20 N 1.31412 * 120.00228 * 180.02562 * 19 17 16 21 21 Si 1.86794 * 119.99626 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.47140 * 90.00832 * 21 19 17 23 23 H 1.48502 * 109.47188 * 210.00619 * 21 19 17 24 24 H 1.48508 * 109.47417 * 330.00475 * 21 19 17 25 25 C 1.36234 * 108.39977 * 359.97438 * 9 7 5 26 26 C 1.50702 * 126.51181 * 180.02562 * 25 9 7 27 27 H 1.09002 * 109.47426 * 184.99036 * 1 2 3 28 28 H 1.08999 * 109.47398 * 304.98822 * 1 2 3 29 29 H 1.08998 * 109.47552 * 64.99069 * 1 2 3 30 30 H 1.09002 * 109.46849 * 84.76492 * 6 5 4 31 31 H 1.09001 * 109.47159 * 204.76335 * 6 5 4 32 32 H 1.09002 * 109.47293 * 324.77083 * 6 5 4 33 33 H 0.97004 * 119.99840 * 0.02562 * 12 10 9 34 34 H 1.08996 * 109.47013 * 300.00126 * 13 12 10 35 35 H 1.08997 * 109.46489 * 60.00346 * 13 12 10 36 36 H 0.96998 * 120.00086 * 359.97438 * 16 14 13 37 37 H 0.97001 * 119.99596 * 180.02562 * 20 19 17 38 38 H 1.09000 * 109.47633 * 269.97989 * 26 25 9 39 39 H 1.08999 * 109.47026 * 29.98640 * 26 25 9 40 40 H 1.09000 * 109.46975 * 149.97949 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2400 -1.2698 -0.0006 5 6 2.5733 -2.0303 1.1095 6 6 2.2480 -1.6909 2.5412 7 7 3.2396 -3.1168 0.6923 8 1 3.5888 -3.8160 1.2667 9 6 3.3503 -3.0838 -0.6813 10 6 4.0123 -4.0960 -1.5143 11 8 4.0479 -3.9606 -2.7229 12 7 4.5805 -5.1748 -0.9400 13 6 5.2404 -6.1848 -1.7710 14 6 5.7883 -7.2790 -0.8915 15 8 5.6414 -7.2212 0.3111 16 7 6.4414 -8.3220 -1.4413 17 6 6.9393 -9.3178 -0.6412 18 1 6.8085 -9.2662 0.4296 19 6 7.6131 -10.3927 -1.2079 20 7 8.0899 -11.3475 -0.4411 21 14 7.8398 -10.4814 -3.0599 22 1 9.1087 -9.8078 -3.4361 23 1 7.8893 -11.9034 -3.4851 24 1 6.7016 -9.8035 -3.7311 25 6 2.7402 -1.9534 -1.1349 26 6 2.6212 -1.5134 -2.5714 27 1 -0.3634 -1.0238 0.0894 28 1 -0.3634 0.5893 0.8419 29 1 -0.3634 0.4344 -0.9313 30 1 1.2416 -2.0368 2.7770 31 1 2.9642 -2.1791 3.2022 32 1 2.3028 -0.6111 2.6802 33 1 4.5518 -5.2828 0.0236 34 1 4.5191 -6.6078 -2.4701 35 1 6.0561 -5.7218 -2.3262 36 1 6.5585 -8.3684 -2.4030 37 1 8.5606 -12.0977 -0.8368 38 1 3.4793 -0.8949 -2.8343 39 1 2.5930 -2.3899 -3.2187 40 1 1.7049 -0.9372 -2.7001 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343510635.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:55:26 Heat of formation + Delta-G solvation = -73.193062 kcal Electronic energy + Delta-G solvation = -24325.494676 eV Core-core repulsion = 20526.942290 eV Total energy + Delta-G solvation = -3798.552385 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.136 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.87769 -39.53420 -38.91812 -38.22882 -34.75914 -33.97505 -33.07910 -32.23977 -31.87485 -30.16542 -28.58632 -27.93382 -26.30083 -24.41290 -22.82741 -21.39289 -19.90836 -19.52042 -18.90745 -18.81872 -18.12801 -16.15151 -15.90685 -15.88571 -15.65426 -15.33974 -15.17173 -14.92922 -14.70805 -14.60908 -13.94099 -13.80839 -13.54427 -13.22541 -13.20547 -13.08191 -12.63039 -12.58871 -12.52747 -12.41581 -12.30769 -12.26040 -12.15212 -11.68615 -11.29797 -10.70381 -10.15460 -10.12667 -9.90942 -9.78050 -9.12357 -8.97327 -8.88596 -8.38927 -8.27722 -6.48216 -4.01290 1.29735 1.66996 2.12035 2.75913 2.93902 2.98964 3.06497 3.11810 3.28555 3.47130 3.97105 4.02318 4.38789 4.43069 4.67670 4.80995 4.85277 5.00810 5.06589 5.11486 5.12595 5.18961 5.39693 5.46074 5.53554 5.59634 5.67571 5.68591 5.70745 5.73622 5.93060 6.11700 6.34315 6.44502 6.61894 7.05988 7.29255 7.35795 7.55935 7.91384 8.16981 8.36581 8.73297 9.21356 9.53577 10.63681 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.030950 B = 0.002631 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.461889 B =10640.466163 C =11366.514890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.440 3.560 3 O -0.455 6.455 4 C -0.263 4.263 5 C 0.097 3.903 6 C -0.097 4.097 7 N -0.522 5.522 8 H 0.423 0.577 9 C -0.052 4.052 10 C 0.588 3.412 11 O -0.532 6.532 12 N -0.708 5.708 13 C 0.108 3.892 14 C 0.436 3.564 15 O -0.583 6.583 16 N -0.573 5.573 17 C -0.312 4.312 18 H 0.122 0.878 19 C 0.046 3.954 20 N -0.872 5.872 21 Si 0.880 3.120 22 H -0.268 1.268 23 H -0.274 1.274 24 H -0.267 1.267 25 C -0.034 4.034 26 C -0.094 4.094 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.405 0.595 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.375 0.625 37 H 0.276 0.724 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.227 18.233 0.414 23.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.315 3.685 3 O -0.328 6.328 4 C -0.271 4.271 5 C -0.024 4.024 6 C -0.154 4.154 7 N -0.117 5.117 8 H 0.262 0.738 9 C -0.163 4.163 10 C 0.375 3.625 11 O -0.409 6.409 12 N -0.362 5.362 13 C -0.020 4.020 14 C 0.222 3.778 15 O -0.468 6.468 16 N -0.210 5.210 17 C -0.441 4.441 18 H 0.139 0.861 19 C -0.159 4.159 20 N -0.510 5.510 21 Si 0.705 3.295 22 H -0.193 1.193 23 H -0.199 1.199 24 H -0.192 1.192 25 C -0.042 4.042 26 C -0.151 4.151 27 H 0.102 0.898 28 H 0.109 0.891 29 H 0.112 0.888 30 H 0.103 0.897 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.243 0.757 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.208 0.792 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.107 0.893 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.732 18.499 0.410 23.042 hybrid contribution 0.495 -0.932 -0.609 1.218 sum -13.237 17.567 -0.199 21.997 Atomic orbital electron populations 1.22241 0.93787 1.04795 1.04593 1.21689 0.91084 0.86507 0.69231 1.90559 1.72538 1.34493 1.35219 1.19836 1.13515 1.00676 0.93031 1.20613 0.98152 0.88048 0.95634 1.20534 1.02960 1.03383 0.88556 1.41622 1.43342 1.19790 1.06994 0.73830 1.19756 1.13432 1.01144 0.81964 1.16982 0.78228 0.80237 0.87069 1.90797 1.59902 1.77062 1.13127 1.45557 1.56938 1.22027 1.11680 1.21006 0.98228 0.89326 0.93429 1.19594 0.84829 0.84574 0.88811 1.90521 1.62650 1.78810 1.14807 1.42118 1.49844 1.20442 1.08603 1.19434 1.32394 0.98226 0.94000 0.86080 1.25080 0.96576 0.95470 0.98735 1.69616 1.35687 1.10178 1.35563 0.86665 0.79222 0.78988 0.84588 1.19320 1.19895 1.19183 1.19505 0.97265 0.92179 0.95241 1.20421 1.01472 1.02515 0.90651 0.89822 0.89094 0.88785 0.89668 0.90518 0.89725 0.75750 0.89373 0.89368 0.79159 0.91286 0.91025 0.89279 0.92257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.25 10.32 36.00 0.37 -0.88 16 2 C 0.44 4.56 6.53 -30.93 -0.20 4.36 16 3 O -0.46 -6.23 17.86 5.52 0.10 -6.13 16 4 C -0.26 -2.96 5.71 -105.10 -0.60 -3.56 16 5 C 0.10 0.93 7.22 -81.46 -0.59 0.35 16 6 C -0.10 -0.58 10.20 36.01 0.37 -0.22 16 7 N -0.52 -5.38 5.90 -5.55 -0.03 -5.41 16 8 H 0.42 3.54 8.13 -40.82 -0.33 3.21 16 9 C -0.05 -0.68 6.98 -82.40 -0.58 -1.26 16 10 C 0.59 8.94 7.79 -12.78 -0.10 8.84 16 11 O -0.53 -9.21 14.68 5.21 0.08 -9.13 16 12 N -0.71 -10.81 5.52 -62.75 -0.35 -11.16 16 13 C 0.11 1.78 6.15 -5.19 -0.03 1.75 16 14 C 0.44 9.22 7.85 -10.98 -0.09 9.13 16 15 O -0.58 -14.09 15.24 5.55 0.08 -14.01 16 16 N -0.57 -12.92 5.09 -10.96 -0.06 -12.98 16 17 C -0.31 -8.40 10.16 -14.93 -0.15 -8.55 16 18 H 0.12 3.71 7.39 -52.48 -0.39 3.33 16 19 C 0.05 1.21 5.50 -17.47 -0.10 1.11 16 20 N -0.87 -24.44 13.96 55.50 0.77 -23.67 16 21 Si 0.88 18.59 27.74 -169.99 -4.71 13.87 16 22 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 23 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 24 H -0.27 -5.13 6.52 56.52 0.37 -4.77 16 25 C -0.03 -0.44 6.22 -104.07 -0.65 -1.09 16 26 C -0.09 -1.11 9.63 36.01 0.35 -0.77 16 27 H 0.08 0.45 7.99 -51.93 -0.41 0.03 16 28 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.51 8.07 -51.93 -0.42 0.09 16 33 H 0.41 5.93 6.51 -40.82 -0.27 5.66 16 34 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.38 7.45 5.76 -40.82 -0.24 7.21 16 37 H 0.28 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.09 1.15 6.40 -51.93 -0.33 0.82 16 40 H 0.06 0.58 8.05 -51.93 -0.42 0.16 16 LS Contribution 350.60 15.07 5.28 5.28 Total: -1.00 -34.06 350.60 -5.76 -39.82 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: -4.93 Total: 14.29 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: -1.99 Total: 9.23 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: 0.34 Total: -53.22 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: 0.26 Total: -29.27 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -4.71 Total: 13.87 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.06 -5.76 -39.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343510635.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.372 kcal (2) G-P(sol) polarization free energy of solvation -34.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds