Wall clock time and date at job start Fri Apr 10 2020 17:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21318 * 120.00115 * 2 1 4 4 C 1.46619 * 119.99810 * 180.02562 * 2 1 3 5 5 C 1.38626 * 126.51543 * 274.70334 * 4 2 1 6 6 C 1.50700 * 125.82322 * 359.71481 * 5 4 2 7 7 N 1.34101 * 108.34971 * 179.97438 * 5 4 2 8 8 H 0.96996 * 125.35427 * 179.97438 * 7 5 4 9 9 C 1.37844 * 109.30311 * 359.97438 * 7 5 4 10 10 C 1.46850 * 125.79889 * 180.02562 * 9 7 5 11 11 O 1.21675 * 119.99659 * 179.97438 * 10 9 7 12 12 N 1.34772 * 120.00379 * 359.97407 * 10 9 7 13 13 C 1.46499 * 120.00245 * 179.97438 * 12 10 9 14 14 C 1.50701 * 109.47039 * 180.02562 * 13 12 10 15 15 O 1.21292 * 120.00118 * 0.02562 * 14 13 12 16 16 N 1.34778 * 119.99983 * 180.02562 * 14 13 12 17 17 C 1.37094 * 120.00119 * 180.02562 * 16 14 13 18 18 H 1.08006 * 119.99881 * 359.97438 * 17 16 14 19 19 C 1.38950 * 120.00305 * 180.02562 * 17 16 14 20 20 N 1.31412 * 120.00228 * 180.02562 * 19 17 16 21 21 Si 1.86794 * 119.99626 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.47140 * 90.00832 * 21 19 17 23 23 H 1.48502 * 109.47188 * 210.00619 * 21 19 17 24 24 H 1.48508 * 109.47417 * 330.00475 * 21 19 17 25 25 C 1.36234 * 108.39977 * 359.97438 * 9 7 5 26 26 C 1.50702 * 126.51181 * 180.02562 * 25 9 7 27 27 H 1.09002 * 109.47426 * 184.99036 * 1 2 3 28 28 H 1.08999 * 109.47398 * 304.98822 * 1 2 3 29 29 H 1.08998 * 109.47552 * 64.99069 * 1 2 3 30 30 H 1.09002 * 109.46849 * 84.76492 * 6 5 4 31 31 H 1.09001 * 109.47159 * 204.76335 * 6 5 4 32 32 H 1.09002 * 109.47293 * 324.77083 * 6 5 4 33 33 H 0.97004 * 119.99840 * 0.02562 * 12 10 9 34 34 H 1.08996 * 109.47013 * 300.00126 * 13 12 10 35 35 H 1.08997 * 109.46489 * 60.00346 * 13 12 10 36 36 H 0.96998 * 120.00086 * 359.97438 * 16 14 13 37 37 H 0.97001 * 119.99596 * 180.02562 * 20 19 17 38 38 H 1.09000 * 109.47633 * 269.97989 * 26 25 9 39 39 H 1.08999 * 109.47026 * 29.98640 * 26 25 9 40 40 H 1.09000 * 109.46975 * 149.97949 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2400 -1.2698 -0.0006 5 6 2.5733 -2.0303 1.1095 6 6 2.2480 -1.6909 2.5412 7 7 3.2396 -3.1168 0.6923 8 1 3.5888 -3.8160 1.2667 9 6 3.3503 -3.0838 -0.6813 10 6 4.0123 -4.0960 -1.5143 11 8 4.0479 -3.9606 -2.7229 12 7 4.5805 -5.1748 -0.9400 13 6 5.2404 -6.1848 -1.7710 14 6 5.7883 -7.2790 -0.8915 15 8 5.6414 -7.2212 0.3111 16 7 6.4414 -8.3220 -1.4413 17 6 6.9393 -9.3178 -0.6412 18 1 6.8085 -9.2662 0.4296 19 6 7.6131 -10.3927 -1.2079 20 7 8.0899 -11.3475 -0.4411 21 14 7.8398 -10.4814 -3.0599 22 1 9.1087 -9.8078 -3.4361 23 1 7.8893 -11.9034 -3.4851 24 1 6.7016 -9.8035 -3.7311 25 6 2.7402 -1.9534 -1.1349 26 6 2.6212 -1.5134 -2.5714 27 1 -0.3634 -1.0238 0.0894 28 1 -0.3634 0.5893 0.8419 29 1 -0.3634 0.4344 -0.9313 30 1 1.2416 -2.0368 2.7770 31 1 2.9642 -2.1791 3.2022 32 1 2.3028 -0.6111 2.6802 33 1 4.5518 -5.2828 0.0236 34 1 4.5191 -6.6078 -2.4701 35 1 6.0561 -5.7218 -2.3262 36 1 6.5585 -8.3684 -2.4030 37 1 8.5606 -12.0977 -0.8368 38 1 3.4793 -0.8949 -2.8343 39 1 2.5930 -2.3899 -3.2187 40 1 1.7049 -0.9372 -2.7001 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343510635.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:55:26 Heat of formation + Delta-G solvation = -99.421020 kcal Electronic energy + Delta-G solvation = -24326.632005 eV Core-core repulsion = 20526.942290 eV Total energy + Delta-G solvation = -3799.689715 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.136 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.76636 -40.88606 -40.02688 -39.59416 -36.37377 -35.54112 -33.99813 -33.86639 -33.00505 -30.80484 -29.86708 -28.77687 -27.47839 -26.05533 -23.70802 -22.41636 -21.53702 -20.86556 -20.34377 -19.75854 -19.32124 -17.62335 -17.23511 -16.99800 -16.76018 -16.53421 -16.39927 -16.17888 -15.73286 -15.63977 -15.15044 -15.08630 -14.75800 -14.40984 -14.29436 -14.07246 -14.05397 -13.75795 -13.65741 -13.21620 -13.19835 -13.00323 -12.98841 -12.97814 -12.52744 -12.46817 -12.02160 -11.60770 -11.24137 -10.82587 -10.70667 -10.40077 -10.31876 -9.86206 -9.16344 -8.48011 -6.10250 0.32882 0.88459 1.26843 1.29591 1.32724 1.42593 1.74856 1.83898 1.97394 2.18654 2.19048 2.81001 3.08359 3.28991 3.69282 3.75088 3.93548 4.03848 4.13352 4.36051 4.37070 4.40114 4.48064 4.62323 4.70128 4.76522 4.78066 4.79938 4.98386 5.04669 5.08485 5.16905 5.30153 5.44882 5.54921 5.70210 5.84941 6.25424 6.40665 6.45128 6.53663 6.75017 6.98080 7.25882 7.73657 8.68168 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.030950 B = 0.002631 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.461889 B =10640.466163 C =11366.514890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.445 3.555 3 O -0.496 6.496 4 C -0.285 4.285 5 C 0.117 3.883 6 C -0.098 4.098 7 N -0.516 5.516 8 H 0.431 0.569 9 C -0.078 4.078 10 C 0.591 3.409 11 O -0.556 6.556 12 N -0.710 5.710 13 C 0.119 3.881 14 C 0.445 3.555 15 O -0.615 6.615 16 N -0.576 5.576 17 C -0.332 4.332 18 H 0.065 0.935 19 C -0.007 4.007 20 N -0.924 5.924 21 Si 0.958 3.042 22 H -0.257 1.257 23 H -0.274 1.274 24 H -0.231 1.231 25 C -0.043 4.043 26 C -0.092 4.092 27 H 0.096 0.904 28 H 0.110 0.890 29 H 0.105 0.895 30 H 0.110 0.890 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.408 0.592 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.392 0.608 37 H 0.281 0.719 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.758 19.557 -0.782 25.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.323 3.677 3 O -0.372 6.372 4 C -0.293 4.293 5 C -0.007 4.007 6 C -0.155 4.155 7 N -0.112 5.112 8 H 0.271 0.729 9 C -0.189 4.189 10 C 0.380 3.620 11 O -0.435 6.435 12 N -0.363 5.363 13 C -0.009 4.009 14 C 0.232 3.768 15 O -0.501 6.501 16 N -0.216 5.216 17 C -0.461 4.461 18 H 0.083 0.917 19 C -0.208 4.208 20 N -0.564 5.564 21 Si 0.778 3.222 22 H -0.182 1.182 23 H -0.198 1.198 24 H -0.155 1.155 25 C -0.052 4.052 26 C -0.149 4.149 27 H 0.115 0.885 28 H 0.128 0.872 29 H 0.123 0.877 30 H 0.128 0.872 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.245 0.755 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.228 0.772 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.284 19.827 -0.778 25.046 hybrid contribution 0.906 -1.260 -0.058 1.553 sum -14.378 18.568 -0.836 23.498 Atomic orbital electron populations 1.22258 0.90383 1.06178 1.05912 1.22189 0.92764 0.85324 0.67431 1.90552 1.73662 1.35563 1.37462 1.20109 1.14582 1.01520 0.93047 1.21227 0.95719 0.86745 0.96984 1.20723 1.04760 1.03818 0.86177 1.41625 1.43173 1.20305 1.06146 0.72864 1.19487 1.15066 1.01276 0.83067 1.17173 0.77732 0.80140 0.86965 1.90777 1.60964 1.77611 1.14175 1.45539 1.57103 1.21976 1.11697 1.20930 0.99289 0.88025 0.92624 1.20451 0.82845 0.84627 0.88880 1.90511 1.63228 1.79548 1.16863 1.41924 1.50518 1.20056 1.09067 1.19023 1.34319 1.00440 0.92281 0.91740 1.26065 0.95375 0.94241 1.05080 1.69776 1.36860 1.11210 1.38546 0.85458 0.80667 0.79364 0.76728 1.18175 1.19849 1.15475 1.19755 0.97061 0.92342 0.96003 1.20394 1.02150 1.02060 0.90250 0.88524 0.87212 0.87675 0.87165 0.89145 0.89386 0.75462 0.87322 0.87468 0.77170 0.90884 0.91660 0.90521 0.90379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.88 10.32 71.24 0.73 -1.14 16 2 C 0.45 8.48 6.53 27.87 0.18 8.66 16 3 O -0.50 -13.20 17.86 -3.15 -0.06 -13.25 16 4 C -0.29 -6.00 5.71 -20.18 -0.12 -6.11 16 5 C 0.12 2.00 7.22 42.30 0.31 2.30 16 6 C -0.10 -0.89 10.20 71.24 0.73 -0.16 16 7 N -0.52 -9.93 5.90 -171.47 -1.01 -10.94 16 8 H 0.43 6.66 8.13 -92.71 -0.75 5.91 16 9 C -0.08 -1.99 6.98 39.99 0.28 -1.72 16 10 C 0.59 17.49 7.79 86.50 0.67 18.16 16 11 O -0.56 -18.82 14.68 -4.27 -0.06 -18.88 16 12 N -0.71 -20.90 5.52 -470.67 -2.60 -23.50 16 13 C 0.12 3.70 6.15 85.63 0.53 4.23 16 14 C 0.44 18.59 7.85 87.66 0.69 19.28 16 15 O -0.62 -30.26 15.24 -3.07 -0.05 -30.31 16 16 N -0.58 -25.66 5.09 -306.98 -1.56 -27.22 16 17 C -0.33 -18.39 10.16 84.04 0.85 -17.53 16 18 H 0.06 4.22 7.39 -2.91 -0.02 4.20 16 19 C -0.01 -0.39 5.50 84.93 0.47 0.08 16 20 N -0.92 -53.45 13.96 21.66 0.30 -53.15 16 21 Si 0.96 37.30 27.74 68.60 1.90 39.20 16 22 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 23 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 24 H -0.23 -7.63 6.52 99.48 0.65 -6.98 16 25 C -0.04 -1.08 6.22 -19.51 -0.12 -1.20 16 26 C -0.09 -2.14 9.63 71.24 0.69 -1.45 16 27 H 0.10 0.72 7.99 -2.39 -0.02 0.70 16 28 H 0.11 0.71 8.14 -2.39 -0.02 0.70 16 29 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.09 0.81 8.07 -2.39 -0.02 0.79 16 33 H 0.41 11.68 6.51 -92.71 -0.60 11.07 16 34 H 0.11 3.03 8.14 -2.39 -0.02 3.02 16 35 H 0.11 3.03 8.14 -2.39 -0.02 3.01 16 36 H 0.39 14.63 5.76 -92.71 -0.53 14.09 16 37 H 0.28 14.88 8.31 -92.71 -0.77 14.11 16 38 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.08 1.98 6.40 -2.39 -0.02 1.96 16 40 H 0.08 1.46 8.05 -2.39 -0.02 1.44 16 Total: -1.00 -77.85 350.60 1.92 -75.93 By element: Atomic # 1 Polarization: 39.56 SS G_CDS: -0.83 Total: 38.73 kcal Atomic # 6 Polarization: 17.50 SS G_CDS: 5.89 Total: 23.39 kcal Atomic # 7 Polarization: -109.94 SS G_CDS: -4.87 Total: -114.81 kcal Atomic # 8 Polarization: -62.28 SS G_CDS: -0.17 Total: -62.44 kcal Atomic # 14 Polarization: 37.30 SS G_CDS: 1.90 Total: 39.20 kcal Total: -77.85 1.92 -75.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343510635.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.492 kcal (2) G-P(sol) polarization free energy of solvation -77.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds