Wall clock time and date at job start Fri Apr 10 2020 17:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47218 * 2 1 4 4 C 1.50698 * 109.47180 * 120.00367 * 2 1 3 5 5 C 1.38015 * 119.51445 * 274.99536 * 4 2 1 6 6 C 1.39926 * 119.13775 * 180.02562 * 5 4 2 7 7 C 1.48161 * 120.89239 * 179.97438 * 6 5 4 8 8 O 1.21506 * 120.00322 * 0.02953 * 7 6 5 9 9 N 1.34781 * 119.99345 * 180.02562 * 7 6 5 10 10 C 1.46502 * 119.99521 * 180.02562 * 9 7 6 11 11 C 1.50702 * 109.47217 * 180.02562 * 10 9 7 12 12 O 1.21292 * 119.99605 * 359.97438 * 11 10 9 13 13 N 1.34768 * 119.99975 * 180.02562 * 11 10 9 14 14 C 1.37099 * 119.99914 * 179.97438 * 13 11 10 15 15 H 1.08005 * 119.99978 * 0.02562 * 14 13 11 16 16 C 1.38954 * 120.00129 * 179.97438 * 14 13 11 17 17 N 1.31409 * 119.99974 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99946 * 180.02562 * 16 14 13 19 19 H 1.48490 * 109.47221 * 90.00078 * 18 16 14 20 20 H 1.48497 * 109.46743 * 210.00217 * 18 16 14 21 21 H 1.48498 * 109.46740 * 329.99529 * 18 16 14 22 22 C 1.39616 * 118.21170 * 0.02562 * 6 5 4 23 23 C 1.38849 * 118.95108 * 0.27314 * 22 6 5 24 24 O 1.35682 * 119.62260 * 179.70057 * 23 22 6 25 25 N 1.31883 * 119.51170 * 95.02012 * 4 2 1 26 26 H 1.08995 * 109.46699 * 299.99817 * 1 2 3 27 27 H 1.09001 * 109.46925 * 59.99644 * 1 2 3 28 28 H 1.08996 * 109.47569 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47027 * 240.00133 * 2 1 3 30 30 H 1.09001 * 109.47463 * 300.00027 * 3 2 1 31 31 H 1.08999 * 109.46760 * 60.00128 * 3 2 1 32 32 H 1.09000 * 109.47119 * 180.02562 * 3 2 1 33 33 H 1.08008 * 120.43051 * 0.02562 * 5 4 2 34 34 H 0.96996 * 120.00275 * 0.02562 * 9 7 6 35 35 H 1.09006 * 109.47209 * 300.00449 * 10 9 7 36 36 H 1.09007 * 109.47091 * 59.99868 * 10 9 7 37 37 H 0.97004 * 120.00621 * 359.97438 * 13 11 10 38 38 H 0.96998 * 119.99861 * 179.97438 * 17 16 14 39 39 H 1.08002 * 120.52082 * 179.97438 * 22 6 5 40 40 H 0.96698 * 114.00037 * 90.00240 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 2.1604 -0.0123 2.4140 6 6 2.6281 -0.6797 3.5515 7 6 2.7810 0.0321 4.8419 8 8 2.4984 1.2110 4.9228 9 7 3.2336 -0.6284 5.9261 10 6 3.3843 0.0752 7.2023 11 6 3.9032 -0.8812 8.2450 12 8 4.1247 -2.0370 7.9511 13 7 4.1199 -0.4526 9.5042 14 6 4.5914 -1.3228 10.4529 15 1 4.7895 -2.3517 10.1911 16 6 4.8155 -0.8808 11.7511 17 7 4.5759 0.3715 12.0693 18 14 5.4586 -2.0663 13.0435 19 1 6.9433 -2.0408 13.0436 20 1 4.9565 -1.6606 14.3808 21 1 4.9869 -3.4399 12.7336 22 6 2.9477 -2.0339 3.4374 23 6 2.7955 -2.6591 2.2070 24 8 3.1079 -3.9733 2.0793 25 7 2.3436 -1.9901 1.1601 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.9029 1.0356 2.4617 34 1 3.4595 -1.5695 5.8615 35 1 4.0886 0.8985 7.0824 36 1 2.4173 0.4673 7.5174 37 1 3.9424 0.4716 9.7394 38 1 4.7319 0.6800 12.9756 39 1 3.3123 -2.5853 4.2916 40 1 2.3694 -4.5721 2.2556 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344148293.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:55:36 Heat of formation + Delta-G solvation = -87.658207 kcal Electronic energy + Delta-G solvation = -24147.510974 eV Core-core repulsion = 20348.331332 eV Total energy + Delta-G solvation = -3799.179641 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.136 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.10596 -39.50274 -38.20568 -37.72989 -35.33280 -34.62542 -33.84576 -32.79110 -31.44471 -29.75503 -28.02847 -27.46696 -25.11894 -24.52176 -23.67973 -21.59531 -20.12440 -19.72707 -18.74602 -18.16757 -17.49109 -17.27096 -16.13499 -15.80689 -15.50528 -15.40445 -15.28682 -14.84157 -14.63708 -14.48751 -14.09943 -14.00341 -13.73840 -13.41445 -12.87257 -12.71519 -12.32962 -12.20978 -12.09870 -12.05882 -11.71030 -11.68326 -11.47529 -11.17712 -11.16803 -10.50244 -10.40320 -10.31201 -10.10233 -9.69734 -9.64485 -9.08992 -9.00196 -8.72394 -8.16785 -6.57267 -3.99542 0.47066 0.69759 2.70884 3.02042 3.07731 3.19150 3.23449 3.25463 3.53893 3.66549 4.05272 4.07763 4.42826 4.67096 4.70575 4.73168 4.78003 4.85506 4.89784 5.11059 5.13353 5.31339 5.32723 5.45377 5.51322 5.56517 5.67820 5.76327 5.83790 5.87689 5.91733 5.96640 5.99632 6.15613 6.44983 7.20851 7.40688 7.55091 7.61513 7.84919 8.15497 8.37965 8.98375 9.31970 9.79300 10.59443 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.026759 B = 0.002561 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.127465 B =10928.701660 C =11803.900673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.045 4.045 3 C -0.152 4.152 4 C 0.154 3.846 5 C -0.124 4.124 6 C -0.063 4.063 7 C 0.555 3.445 8 O -0.534 6.534 9 N -0.696 5.696 10 C 0.108 3.892 11 C 0.426 3.574 12 O -0.598 6.598 13 N -0.546 5.546 14 C -0.306 4.306 15 H 0.106 0.894 16 C 0.027 3.973 17 N -0.893 5.893 18 Si 0.934 3.066 19 H -0.276 1.276 20 H -0.282 1.282 21 H -0.268 1.268 22 C -0.158 4.158 23 C 0.312 3.688 24 O -0.478 6.478 25 N -0.489 5.489 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.154 0.846 34 H 0.412 0.588 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.396 0.604 38 H 0.275 0.725 39 H 0.150 0.850 40 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.308 -0.019 -20.254 21.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.065 4.065 3 C -0.209 4.209 4 C 0.016 3.984 5 C -0.145 4.145 6 C -0.074 4.074 7 C 0.340 3.660 8 O -0.412 6.412 9 N -0.350 5.350 10 C -0.020 4.020 11 C 0.211 3.789 12 O -0.485 6.485 13 N -0.181 5.181 14 C -0.436 4.436 15 H 0.124 0.876 16 C -0.177 4.177 17 N -0.533 5.533 18 Si 0.760 3.240 19 H -0.202 1.202 20 H -0.208 1.208 21 H -0.193 1.193 22 C -0.180 4.180 23 C 0.134 3.866 24 O -0.285 6.285 25 N -0.208 5.208 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.111 0.889 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.172 0.828 34 H 0.251 0.749 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.230 0.770 38 H 0.085 0.915 39 H 0.168 0.832 40 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -6.838 -0.141 -21.005 22.090 hybrid contribution 0.104 -0.347 1.848 1.883 sum -6.734 -0.488 -19.157 20.312 Atomic orbital electron populations 1.21823 0.93313 1.02405 1.02486 1.20094 0.96404 0.95529 0.94431 1.21973 1.01629 0.94530 1.02778 1.20931 0.94392 0.88223 0.94825 1.22128 0.98553 1.02348 0.91429 1.20293 0.98966 0.93375 0.94717 1.18026 0.78138 0.86536 0.83274 1.90771 1.50391 1.15133 1.84914 1.45623 1.65084 1.15386 1.08887 1.21042 1.02609 0.95169 0.83156 1.19669 0.86242 0.88911 0.84041 1.90500 1.58676 1.18963 1.80335 1.41787 1.55830 1.13139 1.07306 1.19738 1.40415 0.94713 0.88687 0.87610 1.25342 0.97152 0.96758 0.98409 1.69610 1.47561 1.14930 1.21226 0.85800 0.78969 0.80067 0.79139 1.20205 1.20751 1.19277 1.22436 1.01713 0.95085 0.98777 1.18925 0.94120 0.86072 0.87519 1.84814 1.39060 1.12134 1.92490 1.66813 1.11489 1.09780 1.32743 0.92179 0.91627 0.92281 0.88940 0.91532 0.91663 0.92140 0.82824 0.74879 0.89401 0.89392 0.76981 0.91504 0.83202 0.74014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.18 37.16 0.34 -0.66 16 2 C -0.05 -0.37 3.23 -91.77 -0.30 -0.67 16 3 C -0.15 -1.06 8.62 37.16 0.32 -0.74 16 4 C 0.15 1.69 5.79 -82.65 -0.48 1.21 16 5 C -0.12 -1.45 8.74 -39.03 -0.34 -1.80 16 6 C -0.06 -0.82 5.91 -104.68 -0.62 -1.44 16 7 C 0.56 8.65 7.80 -12.18 -0.09 8.55 16 8 O -0.53 -9.53 16.44 5.36 0.09 -9.44 16 9 N -0.70 -11.25 5.49 -62.32 -0.34 -11.60 16 10 C 0.11 1.90 6.15 -5.19 -0.03 1.87 16 11 C 0.43 9.47 7.85 -10.99 -0.09 9.38 16 12 O -0.60 -14.87 15.24 5.55 0.08 -14.78 16 13 N -0.55 -13.20 5.29 -10.96 -0.06 -13.26 16 14 C -0.31 -8.16 9.68 -14.93 -0.14 -8.30 16 15 H 0.11 2.94 7.16 -52.48 -0.38 2.56 16 16 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 17 N -0.89 -23.45 13.05 55.50 0.72 -22.72 16 18 Si 0.93 20.21 29.55 -169.99 -5.02 15.19 16 19 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 20 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 21 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 22 C -0.16 -1.91 9.55 -38.84 -0.37 -2.28 16 23 C 0.31 3.74 7.74 -17.16 -0.13 3.61 16 24 O -0.48 -4.96 13.56 -18.75 -0.25 -5.22 16 25 N -0.49 -6.00 10.27 -9.60 -0.10 -6.10 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.09 0.76 8.14 -51.92 -0.42 0.33 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.46 6.48 -51.93 -0.34 0.12 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.15 1.68 5.98 -52.48 -0.31 1.37 16 34 H 0.41 6.52 5.58 -40.82 -0.23 6.29 16 35 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 36 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 37 H 0.40 9.18 7.90 -40.82 -0.32 8.86 16 38 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 39 H 0.15 1.68 6.53 -52.49 -0.34 1.34 16 40 H 0.40 2.12 9.06 45.56 0.41 2.53 16 LS Contribution 348.06 15.07 5.25 5.25 Total: -1.00 -32.27 348.06 -5.69 -37.95 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -4.02 Total: 15.41 kcal Atomic # 6 Polarization: 11.35 SS G_CDS: -2.03 Total: 9.32 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: 0.23 Total: -53.68 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -0.08 Total: -29.44 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.27 -5.69 -37.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344148293.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.704 kcal (2) G-P(sol) polarization free energy of solvation -32.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds