Wall clock time and date at job start Fri Apr 10 2020 17:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47218 * 2 1 4 4 C 1.50698 * 109.47180 * 120.00367 * 2 1 3 5 5 C 1.38015 * 119.51445 * 274.99536 * 4 2 1 6 6 C 1.39926 * 119.13775 * 180.02562 * 5 4 2 7 7 C 1.48161 * 120.89239 * 179.97438 * 6 5 4 8 8 O 1.21506 * 120.00322 * 0.02953 * 7 6 5 9 9 N 1.34781 * 119.99345 * 180.02562 * 7 6 5 10 10 C 1.46502 * 119.99521 * 180.02562 * 9 7 6 11 11 C 1.50702 * 109.47217 * 180.02562 * 10 9 7 12 12 O 1.21292 * 119.99605 * 359.97438 * 11 10 9 13 13 N 1.34768 * 119.99975 * 180.02562 * 11 10 9 14 14 C 1.37099 * 119.99914 * 179.97438 * 13 11 10 15 15 H 1.08005 * 119.99978 * 0.02562 * 14 13 11 16 16 C 1.38954 * 120.00129 * 179.97438 * 14 13 11 17 17 N 1.31409 * 119.99974 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99946 * 180.02562 * 16 14 13 19 19 H 1.48490 * 109.47221 * 90.00078 * 18 16 14 20 20 H 1.48497 * 109.46743 * 210.00217 * 18 16 14 21 21 H 1.48498 * 109.46740 * 329.99529 * 18 16 14 22 22 C 1.39616 * 118.21170 * 0.02562 * 6 5 4 23 23 C 1.38849 * 118.95108 * 0.27314 * 22 6 5 24 24 O 1.35682 * 119.62260 * 179.70057 * 23 22 6 25 25 N 1.31883 * 119.51170 * 95.02012 * 4 2 1 26 26 H 1.08995 * 109.46699 * 299.99817 * 1 2 3 27 27 H 1.09001 * 109.46925 * 59.99644 * 1 2 3 28 28 H 1.08996 * 109.47569 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47027 * 240.00133 * 2 1 3 30 30 H 1.09001 * 109.47463 * 300.00027 * 3 2 1 31 31 H 1.08999 * 109.46760 * 60.00128 * 3 2 1 32 32 H 1.09000 * 109.47119 * 180.02562 * 3 2 1 33 33 H 1.08008 * 120.43051 * 0.02562 * 5 4 2 34 34 H 0.96996 * 120.00275 * 0.02562 * 9 7 6 35 35 H 1.09006 * 109.47209 * 300.00449 * 10 9 7 36 36 H 1.09007 * 109.47091 * 59.99868 * 10 9 7 37 37 H 0.97004 * 120.00621 * 359.97438 * 13 11 10 38 38 H 0.96998 * 119.99861 * 179.97438 * 17 16 14 39 39 H 1.08002 * 120.52082 * 179.97438 * 22 6 5 40 40 H 0.96698 * 114.00037 * 90.00240 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 2.1604 -0.0123 2.4140 6 6 2.6281 -0.6797 3.5515 7 6 2.7810 0.0321 4.8419 8 8 2.4984 1.2110 4.9228 9 7 3.2336 -0.6284 5.9261 10 6 3.3843 0.0752 7.2023 11 6 3.9032 -0.8812 8.2450 12 8 4.1247 -2.0370 7.9511 13 7 4.1199 -0.4526 9.5042 14 6 4.5914 -1.3228 10.4529 15 1 4.7895 -2.3517 10.1911 16 6 4.8155 -0.8808 11.7511 17 7 4.5759 0.3715 12.0693 18 14 5.4586 -2.0663 13.0435 19 1 6.9433 -2.0408 13.0436 20 1 4.9565 -1.6606 14.3808 21 1 4.9869 -3.4399 12.7336 22 6 2.9477 -2.0339 3.4374 23 6 2.7955 -2.6591 2.2070 24 8 3.1079 -3.9733 2.0793 25 7 2.3436 -1.9901 1.1601 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.9029 1.0356 2.4617 34 1 3.4595 -1.5695 5.8615 35 1 4.0886 0.8985 7.0824 36 1 2.4173 0.4673 7.5174 37 1 3.9424 0.4716 9.7394 38 1 4.7319 0.6800 12.9756 39 1 3.3123 -2.5853 4.2916 40 1 2.3694 -4.5721 2.2556 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344148293.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:55:35 Heat of formation + Delta-G solvation = -114.391824 kcal Electronic energy + Delta-G solvation = -24148.670230 eV Core-core repulsion = 20348.331332 eV Total energy + Delta-G solvation = -3800.338898 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.136 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -42.08340 -40.84456 -39.87628 -38.54940 -36.33814 -36.08190 -35.44169 -33.80370 -33.37256 -30.62993 -29.51063 -28.03745 -26.76776 -25.53480 -24.80950 -22.50877 -21.47177 -21.15370 -20.14778 -19.61580 -18.62157 -18.27825 -17.52372 -16.92339 -16.91098 -16.70138 -16.58091 -16.22122 -15.76793 -15.59811 -15.56491 -15.22537 -14.85458 -14.47987 -14.04816 -13.73869 -13.56758 -13.52894 -13.42364 -12.92455 -12.90447 -12.82843 -12.47131 -12.38978 -12.13671 -12.07366 -11.79784 -11.58782 -11.58447 -11.09704 -10.63400 -10.56291 -10.35052 -10.11152 -9.96240 -8.52758 -6.02899 -0.53592 -0.18802 1.35286 1.42483 1.54464 1.59782 1.76467 1.88247 2.28348 2.37682 2.59060 3.04817 3.14619 3.24041 3.40098 3.78656 3.83322 3.99676 4.11808 4.17415 4.23175 4.32757 4.37570 4.37900 4.57783 4.61711 4.80640 4.86477 4.96875 5.01331 5.06173 5.16951 5.33302 5.37110 5.39310 5.41432 5.89481 6.26282 6.45862 6.51731 6.76085 6.87627 7.01867 7.41571 7.91677 8.64008 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.026759 B = 0.002561 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.127465 B =10928.701660 C =11803.900673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.044 4.044 3 C -0.150 4.150 4 C 0.156 3.844 5 C -0.124 4.124 6 C -0.074 4.074 7 C 0.561 3.439 8 O -0.558 6.558 9 N -0.697 5.697 10 C 0.119 3.881 11 C 0.431 3.569 12 O -0.624 6.624 13 N -0.557 5.557 14 C -0.337 4.337 15 H 0.087 0.913 16 C -0.010 4.010 17 N -0.915 5.915 18 Si 0.996 3.004 19 H -0.271 1.271 20 H -0.272 1.272 21 H -0.270 1.270 22 C -0.160 4.160 23 C 0.312 3.688 24 O -0.485 6.485 25 N -0.501 5.501 26 H 0.057 0.943 27 H 0.085 0.915 28 H 0.051 0.949 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.161 0.839 34 H 0.414 0.586 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.400 0.600 38 H 0.280 0.720 39 H 0.155 0.845 40 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.711 0.058 -21.180 22.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.063 4.063 3 C -0.207 4.207 4 C 0.018 3.982 5 C -0.145 4.145 6 C -0.084 4.084 7 C 0.347 3.653 8 O -0.437 6.437 9 N -0.351 5.351 10 C -0.008 4.008 11 C 0.218 3.782 12 O -0.513 6.513 13 N -0.192 5.192 14 C -0.466 4.466 15 H 0.105 0.895 16 C -0.210 4.210 17 N -0.555 5.555 18 Si 0.819 3.181 19 H -0.196 1.196 20 H -0.197 1.197 21 H -0.194 1.194 22 C -0.182 4.182 23 C 0.133 3.867 24 O -0.296 6.296 25 N -0.221 5.221 26 H 0.076 0.924 27 H 0.104 0.896 28 H 0.070 0.930 29 H 0.113 0.887 30 H 0.104 0.896 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.179 0.821 34 H 0.254 0.746 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.234 0.766 38 H 0.090 0.910 39 H 0.173 0.827 40 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -7.258 -0.072 -21.943 23.112 hybrid contribution 0.201 -0.403 2.023 2.073 sum -7.057 -0.475 -19.920 21.138 Atomic orbital electron populations 1.21812 0.92232 1.02239 1.03405 1.20204 0.97188 0.95890 0.93054 1.21975 1.01216 0.93807 1.03719 1.21393 0.93345 0.87880 0.95541 1.22249 0.98286 1.02716 0.91249 1.20134 1.00563 0.93844 0.93899 1.18288 0.77101 0.86224 0.83639 1.90754 1.51443 1.16159 1.85356 1.45608 1.65451 1.15453 1.08589 1.20894 1.03350 0.94118 0.82438 1.20367 0.84522 0.89118 0.84153 1.90479 1.59343 1.20548 1.80887 1.41829 1.56571 1.13073 1.07775 1.19733 1.42349 0.94514 0.90038 0.89541 1.26118 0.96850 0.98344 0.99736 1.69671 1.47848 1.16044 1.21925 0.84880 0.78491 0.77868 0.76846 1.19605 1.19650 1.19434 1.22450 1.01840 0.94720 0.99190 1.19008 0.93641 0.86685 0.87349 1.84764 1.40548 1.11813 1.92450 1.66920 1.11895 1.10370 1.32895 0.92361 0.89628 0.92984 0.88734 0.89557 0.91778 0.92803 0.82146 0.74648 0.88104 0.87951 0.76596 0.91026 0.82750 0.71541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.18 71.98 0.66 -1.02 16 2 C -0.04 -0.65 3.23 -11.54 -0.04 -0.69 16 3 C -0.15 -1.81 8.62 71.98 0.62 -1.19 16 4 C 0.16 3.24 5.79 42.50 0.25 3.49 16 5 C -0.12 -2.80 8.74 22.63 0.20 -2.61 16 6 C -0.07 -1.89 5.91 -19.90 -0.12 -2.01 16 7 C 0.56 17.10 7.80 86.88 0.68 17.78 16 8 O -0.56 -19.47 16.44 -3.73 -0.06 -19.53 16 9 N -0.70 -22.16 5.49 -469.38 -2.58 -24.73 16 10 C 0.12 4.14 6.15 85.63 0.53 4.66 16 11 C 0.43 19.25 7.85 87.66 0.69 19.94 16 12 O -0.62 -31.33 15.24 -3.07 -0.05 -31.38 16 13 N -0.56 -27.22 5.29 -306.98 -1.62 -28.85 16 14 C -0.34 -18.21 9.68 84.04 0.81 -17.40 16 15 H 0.09 4.92 7.16 -2.91 -0.02 4.90 16 16 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16 17 N -0.92 -47.79 13.05 21.66 0.28 -47.51 16 18 Si 1.00 41.12 29.55 68.60 2.03 43.15 16 19 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 20 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 21 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 22 C -0.16 -3.76 9.55 22.75 0.22 -3.55 16 23 C 0.31 7.16 7.74 84.78 0.66 7.82 16 24 O -0.49 -9.48 13.56 -90.00 -1.22 -10.70 16 25 N -0.50 -11.72 10.27 -297.16 -3.05 -14.78 16 26 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 30 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.80 6.48 -2.39 -0.02 0.78 16 32 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.16 3.34 5.98 -2.91 -0.02 3.33 16 34 H 0.41 12.99 5.58 -92.71 -0.52 12.47 16 35 H 0.10 3.29 8.14 -2.38 -0.02 3.27 16 36 H 0.10 3.30 8.14 -2.38 -0.02 3.29 16 37 H 0.40 18.68 7.90 -92.71 -0.73 17.95 16 38 H 0.28 13.70 8.31 -92.71 -0.77 12.93 16 39 H 0.15 3.40 6.53 -2.91 -0.02 3.38 16 40 H 0.42 3.86 9.06 -74.06 -0.67 3.19 16 Total: -1.00 -67.92 348.06 -1.45 -69.37 By element: Atomic # 1 Polarization: 40.54 SS G_CDS: -0.80 Total: 39.75 kcal Atomic # 6 Polarization: 19.59 SS G_CDS: 5.62 Total: 25.21 kcal Atomic # 7 Polarization: -108.90 SS G_CDS: -6.97 Total: -115.86 kcal Atomic # 8 Polarization: -60.28 SS G_CDS: -1.33 Total: -61.61 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Total: -67.92 -1.45 -69.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344148293.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.024 kcal (2) G-P(sol) polarization free energy of solvation -67.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds