Wall clock time and date at job start Fri Apr 10 2020 17:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35732 * 116.99951 * 2 1 4 4 C 1.38935 * 119.59742 * 180.02562 * 3 2 1 5 5 C 1.38289 * 119.19124 * 179.97438 * 4 3 2 6 6 C 1.39452 * 118.41916 * 359.97438 * 5 4 3 7 7 N 1.39908 * 120.42787 * 180.27503 * 6 5 4 8 8 C 1.34776 * 119.99731 * 325.66487 * 7 6 5 9 9 O 1.21388 * 120.00511 * 4.32763 * 8 7 6 10 10 C 1.49339 * 119.99763 * 184.32122 * 8 7 6 11 11 O 1.21361 * 120.00058 * 0.02562 * 10 8 7 12 12 N 1.34776 * 120.00188 * 180.02562 * 10 8 7 13 13 C 1.46504 * 119.99981 * 180.02562 * 12 10 8 14 14 C 1.53001 * 109.46668 * 180.02562 * 13 12 10 15 15 C 1.50705 * 109.46577 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00360 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99773 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99993 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 120.00254 * 0.02562 * 17 15 14 20 20 H 1.48495 * 109.47452 * 89.99318 * 19 17 15 21 21 H 1.48498 * 109.47383 * 210.00091 * 19 17 15 22 22 H 1.48504 * 109.46904 * 329.99772 * 19 17 15 23 23 C 1.38727 * 119.14149 * 0.02562 * 6 5 4 24 24 C 1.50690 * 119.63799 * 180.02562 * 23 6 5 25 25 N 1.31935 * 120.72550 * 0.02562 * 23 6 5 26 26 H 1.08993 * 109.47428 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47074 * 300.00372 * 1 2 3 28 28 H 1.09002 * 109.47161 * 59.99839 * 1 2 3 29 29 H 1.08001 * 120.40672 * 359.95383 * 4 3 2 30 30 H 1.07994 * 120.79153 * 179.97438 * 5 4 3 31 31 H 0.96993 * 119.99844 * 145.66594 * 7 6 5 32 32 H 0.97001 * 119.99533 * 0.02562 * 12 10 8 33 33 H 1.08996 * 109.47100 * 300.00368 * 13 12 10 34 34 H 1.08996 * 109.46923 * 60.00354 * 13 12 10 35 35 H 1.09004 * 109.47491 * 299.99681 * 14 13 12 36 36 H 1.08996 * 109.47218 * 60.00463 * 14 13 12 37 37 H 0.97001 * 119.99955 * 180.02562 * 18 17 15 38 38 H 1.09002 * 109.47693 * 90.00015 * 24 23 6 39 39 H 1.09002 * 109.47238 * 209.99832 * 24 23 6 40 40 H 1.09000 * 109.47155 * 329.99803 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4331 1.2724 -0.0005 5 6 4.0522 2.5090 -0.0011 6 6 3.2526 3.6514 -0.0016 7 7 3.8346 4.9237 -0.0079 8 6 4.9940 5.1375 0.6452 9 8 5.5736 4.2104 1.1725 10 6 5.5657 6.5151 0.7201 11 8 4.9861 7.4421 0.1932 12 7 6.7253 6.7290 1.3728 13 6 7.2858 8.0806 1.4467 14 6 8.5958 8.0468 2.2365 15 6 9.1720 9.4372 2.3130 16 1 8.6558 10.2623 1.8448 17 6 10.3588 9.6558 2.9799 18 7 10.8620 10.8691 3.0463 19 14 11.2528 8.2285 3.7879 20 1 12.1980 7.6224 2.8161 21 1 12.0056 8.7209 4.9694 22 1 10.2654 7.2072 4.2207 23 6 1.8725 3.5101 -0.0010 24 6 0.9978 4.7372 -0.0022 25 7 1.3175 2.3132 0.0005 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 4.0214 0.3666 -0.0002 30 1 5.1292 2.5880 -0.0011 31 1 3.4038 5.6517 -0.4824 32 1 7.1887 5.9880 1.7935 33 1 7.4787 8.4495 0.4393 34 1 6.5770 8.7410 1.9460 35 1 8.4033 7.6777 3.2439 36 1 9.3045 7.3865 1.7367 37 1 11.6971 11.0228 3.5152 38 1 0.7865 5.0319 -1.0301 39 1 0.0623 4.5170 0.5122 40 1 1.5117 5.5502 0.5106 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344433281.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:55:42 Heat of formation + Delta-G solvation = -69.692958 kcal Electronic energy + Delta-G solvation = -24008.156571 eV Core-core repulsion = 20209.755961 eV Total energy + Delta-G solvation = -3798.400610 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.136 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.54432 -40.45481 -38.91621 -38.04029 -35.74995 -34.89058 -33.41363 -32.86981 -30.92085 -30.35397 -28.66953 -27.14517 -25.89877 -24.24808 -22.97828 -22.36563 -20.97109 -20.44423 -19.04572 -18.39998 -17.61231 -17.04202 -16.97404 -16.44983 -16.26012 -15.97485 -15.10082 -14.83972 -14.72464 -14.36682 -14.25589 -14.20868 -13.87261 -13.69765 -13.20600 -12.93179 -12.84377 -12.68108 -12.65753 -12.16590 -11.72712 -11.67143 -11.56482 -11.30419 -10.84197 -10.50251 -10.40009 -10.16703 -10.00699 -9.87146 -9.52181 -9.37571 -8.89305 -8.65609 -8.28063 -6.16051 -4.17189 0.61049 0.87260 1.43292 2.18758 2.77879 3.10731 3.23552 3.31954 3.33014 3.39361 3.56817 3.79511 4.32379 4.34143 4.42776 4.63944 4.79203 4.93857 4.97122 5.07951 5.16911 5.19274 5.20521 5.25582 5.39324 5.63036 5.68810 5.82789 5.88260 6.02906 6.19313 6.36068 6.41499 6.68523 6.88520 6.98893 7.12360 7.35124 7.47073 7.56687 7.64441 8.04191 8.37190 8.86917 9.43628 10.96570 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.031706 B = 0.002361 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.894435 B =11855.968095 C =12557.430670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.308 6.308 3 C 0.310 3.690 4 C -0.176 4.176 5 C -0.038 4.038 6 C 0.057 3.943 7 N -0.638 5.638 8 C 0.509 3.491 9 O -0.503 6.503 10 C 0.502 3.498 11 O -0.524 6.524 12 N -0.687 5.687 13 C 0.127 3.873 14 C -0.024 4.024 15 C -0.525 4.525 16 H 0.077 0.923 17 C 0.070 3.930 18 N -0.896 5.896 19 Si 0.881 3.119 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.265 1.265 23 C 0.152 3.848 24 C -0.110 4.110 25 N -0.523 5.523 26 H 0.095 0.905 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.147 0.853 30 H 0.160 0.840 31 H 0.425 0.575 32 H 0.410 0.590 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.025 0.975 36 H 0.021 0.979 37 H 0.266 0.734 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.236 -19.864 -7.346 29.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.215 6.215 3 C 0.131 3.869 4 C -0.197 4.197 5 C -0.065 4.065 6 C -0.040 4.040 7 N -0.287 5.287 8 C 0.292 3.708 9 O -0.377 6.377 10 C 0.281 3.719 11 O -0.401 6.401 12 N -0.338 5.338 13 C 0.005 3.995 14 C -0.062 4.062 15 C -0.564 4.564 16 H 0.095 0.905 17 C -0.132 4.132 18 N -0.534 5.534 19 Si 0.708 3.292 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.190 1.190 23 C 0.013 3.987 24 C -0.168 4.168 25 N -0.247 5.247 26 H 0.113 0.887 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.165 0.835 30 H 0.177 0.823 31 H 0.264 0.736 32 H 0.245 0.755 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.043 0.957 36 H 0.039 0.961 37 H 0.075 0.925 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -20.826 -20.020 -7.235 29.781 hybrid contribution 1.260 -0.536 0.470 1.447 sum -19.567 -20.556 -6.765 29.175 Atomic orbital electron populations 1.22854 0.77244 1.02927 1.02473 1.86256 1.22896 1.24314 1.87990 1.19795 0.89393 0.84467 0.93256 1.21001 0.91727 0.99277 1.07689 1.21623 1.01827 0.89659 0.93408 1.18346 0.92344 0.85503 1.07799 1.43014 1.23570 1.10616 1.51456 1.20681 0.81309 0.90390 0.78445 1.90751 1.58745 1.44076 1.44090 1.19658 0.83001 0.87937 0.81302 1.90774 1.59993 1.43583 1.45787 1.46220 1.21724 1.13631 1.52210 1.21766 0.96520 0.79372 1.01812 1.19831 0.91666 0.99223 0.95437 1.20857 1.07371 0.92306 1.35816 0.90510 1.24990 0.96958 0.95666 0.95581 1.69897 1.20369 1.20446 1.42702 0.86766 0.80120 0.82926 0.79390 1.20143 1.21204 1.18970 1.20730 0.89774 0.92638 0.95531 1.20780 0.99589 0.92750 1.03654 1.67104 1.40083 0.97799 1.19750 0.88650 0.92296 0.92298 0.83546 0.82256 0.73636 0.75459 0.91063 0.91054 0.95686 0.96113 0.92463 0.89715 0.89731 0.90206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.38 101.05 1.05 1.33 16 2 O -0.31 -3.05 10.48 -18.90 -0.20 -3.24 16 3 C 0.31 3.36 7.49 -17.13 -0.13 3.23 16 4 C -0.18 -1.78 10.03 -39.30 -0.39 -2.17 16 5 C -0.04 -0.42 8.81 -39.11 -0.34 -0.76 16 6 C 0.06 0.61 6.30 -83.54 -0.53 0.08 16 7 N -0.64 -6.77 4.75 -10.18 -0.05 -6.82 16 8 C 0.51 6.64 7.74 -11.64 -0.09 6.55 16 9 O -0.50 -7.22 13.92 5.46 0.08 -7.15 16 10 C 0.50 7.55 7.89 -11.64 -0.09 7.46 16 11 O -0.52 -8.81 16.48 5.49 0.09 -8.72 16 12 N -0.69 -10.91 5.55 -60.77 -0.34 -11.25 16 13 C 0.13 2.40 5.61 -4.04 -0.02 2.37 16 14 C -0.02 -0.52 4.16 -27.88 -0.12 -0.64 16 15 C -0.53 -14.23 9.66 -34.44 -0.33 -14.56 16 16 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 17 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 18 N -0.90 -26.74 13.96 55.43 0.77 -25.97 16 19 Si 0.88 20.75 27.47 -169.99 -4.67 16.08 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16 23 C 0.15 1.53 6.80 -82.37 -0.56 0.97 16 24 C -0.11 -0.79 9.63 36.00 0.35 -0.44 16 25 N -0.52 -5.65 9.11 -9.39 -0.09 -5.74 16 26 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.41 8.10 -51.93 -0.42 -0.01 16 28 H 0.06 0.40 8.10 -51.93 -0.42 -0.03 16 29 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 30 H 0.16 1.77 6.27 -52.49 -0.33 1.44 16 31 H 0.42 3.79 7.31 -40.82 -0.30 3.50 16 32 H 0.41 5.98 7.94 -40.82 -0.32 5.65 16 33 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 35 H 0.02 0.54 7.20 -51.93 -0.37 0.17 16 36 H 0.02 0.44 7.57 -51.93 -0.39 0.05 16 37 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.54 7.15 -51.93 -0.37 0.17 16 LS Contribution 347.15 15.07 5.23 5.23 Total: -1.00 -31.92 347.15 -5.53 -37.45 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -5.05 Total: 4.83 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -1.31 Total: 5.29 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: 0.30 Total: -49.77 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.03 Total: -19.11 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.67 Total: 16.08 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.92 -5.53 -37.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344433281.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.240 kcal (2) G-P(sol) polarization free energy of solvation -31.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds