Wall clock time and date at job start Fri Apr 10 2020 17:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42903 * 109.46769 * 2 1 4 4 C 1.42904 * 113.99586 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.46857 * 179.97438 * 4 3 2 6 6 O 1.42902 * 109.46871 * 64.99776 * 5 4 3 7 7 C 1.42899 * 113.99508 * 179.97438 * 6 5 4 8 8 C 1.53497 * 114.20709 * 210.00055 * 7 6 5 9 9 N 1.47063 * 87.98740 * 220.34701 * 8 7 6 10 10 S 1.65599 * 136.05606 * 207.08198 * 9 8 7 11 11 O 1.42097 * 104.27788 * 333.92936 * 10 9 8 12 12 O 1.42100 * 104.27875 * 206.07121 * 10 9 8 13 13 C 1.81399 * 104.44808 * 90.00319 * 10 9 8 14 14 C 1.52998 * 109.47108 * 180.02562 * 13 10 9 15 15 C 1.50706 * 109.47348 * 179.97438 * 14 13 10 16 16 H 1.08000 * 119.99302 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00436 * 179.72505 * 15 14 13 18 18 N 1.31514 * 120.00481 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99745 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.47209 * 90.00365 * 19 17 15 21 21 H 1.48506 * 109.47294 * 210.00213 * 19 17 15 22 22 H 1.48501 * 109.47275 * 330.00116 * 19 17 15 23 23 C 1.47072 * 87.88515 * 27.34121 * 9 8 7 24 24 H 1.08993 * 109.47665 * 59.99980 * 1 2 3 25 25 H 1.09003 * 109.47155 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.46879 * 299.99547 * 1 2 3 27 27 H 1.08995 * 109.46652 * 240.00368 * 2 1 3 28 28 H 1.08998 * 109.47203 * 120.00071 * 2 1 3 29 29 H 1.08998 * 109.47109 * 60.00037 * 4 3 2 30 30 H 1.08998 * 109.46944 * 299.99470 * 4 3 2 31 31 H 1.09000 * 109.46883 * 304.99619 * 5 4 3 32 32 H 1.08995 * 109.47113 * 184.99963 * 5 4 3 33 33 H 1.08996 * 113.41770 * 343.20058 * 7 6 5 34 34 H 1.08994 * 113.46819 * 105.56121 * 8 7 6 35 35 H 1.09007 * 113.46314 * 335.12758 * 8 7 6 36 36 H 1.09000 * 109.47516 * 59.99948 * 13 10 9 37 37 H 1.09002 * 109.46834 * 299.99504 * 13 10 9 38 38 H 1.09001 * 109.47671 * 59.99908 * 14 13 10 39 39 H 1.08998 * 109.47454 * 299.99906 * 14 13 10 40 40 H 0.96995 * 120.00207 * 179.97438 * 18 17 15 41 41 H 1.08995 * 113.46713 * 87.43744 * 23 9 8 42 42 H 1.08995 * 113.46738 * 217.87737 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8253 2.9385 -0.0012 6 8 3.3984 3.5458 1.2199 7 6 3.7202 4.9344 1.3218 8 6 3.9568 5.4219 2.7579 9 7 3.2229 6.6472 2.4077 10 16 3.2155 8.2210 2.9229 11 8 3.6743 8.1522 4.2660 12 8 1.9067 8.6832 2.6186 13 6 4.4424 9.0469 1.8726 14 6 4.5298 10.5254 2.2563 15 6 5.5495 11.2114 1.3842 16 1 6.0823 10.6489 0.6317 17 6 5.7986 12.5581 1.5433 18 7 6.6881 13.1569 0.7819 19 14 4.8714 13.5325 2.8396 20 1 5.6242 13.4955 4.1192 21 1 4.7268 14.9408 2.3909 22 1 3.5262 12.9360 3.0393 23 6 2.4939 5.8583 1.4032 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8333 0.9768 -0.8908 30 1 3.8340 0.9766 0.8892 31 1 3.3492 3.4412 -0.8430 32 1 4.9081 3.0256 -0.0912 33 1 4.4799 5.2564 0.6097 34 1 5.0075 5.5963 2.9895 35 1 3.4539 4.8148 3.5107 36 1 4.1442 8.9593 0.8278 37 1 5.4160 8.5773 2.0132 38 1 4.8282 10.6127 3.3010 39 1 3.5563 10.9953 2.1162 40 1 6.8630 14.1043 0.8936 41 1 1.6054 5.3664 1.7989 42 1 2.2982 6.4048 0.4806 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346559456.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:55:50 Heat of formation + Delta-G solvation = -128.051428 kcal Electronic energy + Delta-G solvation = -23114.287593 eV Core-core repulsion = 19416.507571 eV Total energy + Delta-G solvation = -3697.780022 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 307.133 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -39.87321 -38.45114 -36.70242 -36.63093 -35.57710 -33.96617 -32.11466 -31.49813 -29.65164 -27.55861 -26.12678 -25.95334 -23.14080 -22.92552 -21.72009 -20.82980 -18.61359 -17.85985 -17.42941 -17.21135 -16.91014 -16.23201 -16.02238 -15.54511 -15.32184 -15.14135 -14.34420 -14.31693 -14.06137 -13.78862 -13.49506 -13.40120 -12.90325 -12.81535 -12.55285 -12.33268 -11.93261 -11.90378 -11.74816 -11.67685 -11.63788 -11.48225 -11.34831 -11.26706 -11.21678 -11.16278 -10.46270 -10.16837 -9.96820 -9.76537 -9.65916 -9.44692 -8.96711 -8.67862 -6.18211 -4.19648 0.54749 2.79428 3.25864 3.29258 3.33203 3.37624 3.42545 4.11058 4.21595 4.34631 4.41723 4.54464 4.58886 4.67374 4.78031 4.83000 4.92134 4.98454 5.07291 5.07587 5.13154 5.28575 5.35349 5.38174 5.41501 5.49496 5.50346 5.54133 5.55649 5.73898 5.77719 5.95696 6.25126 6.37842 6.79515 6.82134 6.91901 6.97021 7.52774 8.34590 8.82396 9.41348 10.94056 Molecular weight = 307.13amu Principal moments of inertia in cm(-1) A = 0.028815 B = 0.002570 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.477839 B =10891.666954 C =11323.455385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.381 6.381 4 C 0.064 3.936 5 C 0.061 3.939 6 O -0.362 6.362 7 C 0.046 3.954 8 C 0.130 3.870 9 N -1.046 6.046 10 S 2.616 3.384 11 O -0.959 6.959 12 O -0.959 6.959 13 C -0.578 4.578 14 C -0.008 4.008 15 C -0.519 4.519 16 H 0.078 0.922 17 C 0.071 3.929 18 N -0.895 5.895 19 Si 0.870 3.130 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.262 1.262 23 C 0.114 3.886 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.046 0.954 28 H 0.048 0.952 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.106 0.894 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.029 0.971 39 H 0.033 0.967 40 H 0.267 0.733 41 H 0.090 0.910 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.737 -26.666 -2.759 27.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.300 6.300 4 C -0.013 4.013 5 C -0.016 4.016 6 O -0.279 6.279 7 C -0.015 4.015 8 C 0.005 3.995 9 N -0.884 5.884 10 S 2.715 3.285 11 O -0.950 6.950 12 O -0.950 6.950 13 C -0.711 4.711 14 C -0.047 4.047 15 C -0.558 4.558 16 H 0.096 0.904 17 C -0.132 4.132 18 N -0.533 5.533 19 Si 0.696 3.304 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.186 1.186 23 C -0.012 4.012 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.124 0.876 34 H 0.101 0.899 35 H 0.108 0.892 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.047 0.953 39 H 0.051 0.949 40 H 0.076 0.924 41 H 0.108 0.892 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.455 -25.901 -1.859 27.016 hybrid contribution 0.421 0.519 -0.106 0.677 sum -7.033 -25.382 -1.966 26.411 Atomic orbital electron populations 1.21741 0.93684 1.02145 1.03357 1.22455 0.95775 0.83874 0.99864 1.87984 1.20490 1.26169 1.95374 1.22524 0.82252 0.95653 1.00850 1.22622 0.98515 0.92501 0.87937 1.87997 1.80235 1.21965 1.37738 1.24289 0.97628 0.81186 0.98359 1.22626 0.97583 0.83112 0.96226 1.60100 1.52868 1.22509 1.52963 1.05044 0.76450 0.71451 0.75506 1.93543 1.83565 1.84776 1.33130 1.93546 1.36442 1.79184 1.85782 1.30316 1.15720 1.10419 1.14642 1.19432 0.99623 0.87434 0.98250 1.20829 1.21430 0.94303 1.19256 0.90420 1.24988 0.94748 0.97597 0.95820 1.69876 1.33132 1.11217 1.39079 0.86917 0.81394 0.79772 0.82317 1.19645 1.20725 1.18615 1.22989 0.96192 0.90512 0.91499 0.91838 0.91214 0.91658 0.93609 0.93420 0.91881 0.92383 0.92025 0.91382 0.87634 0.89900 0.89191 0.85621 0.85634 0.95315 0.94882 0.92357 0.89167 0.90213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 10.28 37.16 0.38 -0.55 16 2 C 0.06 0.38 6.66 37.16 0.25 0.63 16 3 O -0.38 -3.59 10.31 -40.09 -0.41 -4.01 16 4 C 0.06 0.45 6.32 37.16 0.23 0.68 16 5 C 0.06 0.45 6.16 37.16 0.23 0.68 16 6 O -0.36 -3.61 10.36 -40.09 -0.42 -4.03 16 7 C 0.05 0.44 4.68 -26.08 -0.12 0.32 16 8 C 0.13 1.44 8.53 -8.51 -0.07 1.37 16 9 N -1.05 -14.36 4.10 -125.04 -0.51 -14.87 16 10 S 2.62 46.37 5.96 -107.50 -0.64 45.73 16 11 O -0.96 -19.52 18.07 -57.54 -1.04 -20.56 16 12 O -0.96 -19.69 18.07 -57.54 -1.04 -20.73 16 13 C -0.58 -10.62 6.12 37.16 0.23 -10.39 16 14 C -0.01 -0.19 4.05 -27.88 -0.11 -0.30 16 15 C -0.52 -14.49 9.66 -34.44 -0.33 -14.82 16 16 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 17 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 18 N -0.90 -27.01 13.96 55.43 0.77 -26.23 16 19 Si 0.87 21.56 27.47 -169.99 -4.67 16.89 16 20 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.26 -6.30 6.53 56.52 0.37 -5.93 16 23 C 0.11 1.30 8.54 -8.36 -0.07 1.23 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 27 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.11 0.82 7.88 -51.93 -0.41 0.41 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.13 2.09 8.14 -51.92 -0.42 1.67 16 37 H 0.13 2.08 8.14 -51.92 -0.42 1.65 16 38 H 0.03 0.67 7.58 -51.93 -0.39 0.28 16 39 H 0.03 0.79 7.18 -51.93 -0.37 0.42 16 40 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 366.58 15.07 5.52 5.52 Total: -1.00 -36.21 366.58 -9.03 -45.24 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: -7.10 Total: -3.76 kcal Atomic # 6 Polarization: -19.71 SS G_CDS: 0.51 Total: -19.19 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: 0.26 Total: -41.11 kcal Atomic # 8 Polarization: -46.41 SS G_CDS: -2.91 Total: -49.32 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Atomic # 16 Polarization: 46.37 SS G_CDS: -0.64 Total: 45.73 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.21 -9.03 -45.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346559456.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.814 kcal (2) G-P(sol) polarization free energy of solvation -36.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds