Wall clock time and date at job start Fri Apr 10 2020 17:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42903 * 109.46769 * 2 1 4 4 C 1.42904 * 113.99586 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.46857 * 179.97438 * 4 3 2 6 6 O 1.42902 * 109.46871 * 64.99776 * 5 4 3 7 7 C 1.42899 * 113.99508 * 179.97438 * 6 5 4 8 8 C 1.53497 * 114.20709 * 210.00055 * 7 6 5 9 9 N 1.47063 * 87.98740 * 220.34701 * 8 7 6 10 10 S 1.65599 * 136.05606 * 207.08198 * 9 8 7 11 11 O 1.42097 * 104.27788 * 333.92936 * 10 9 8 12 12 O 1.42100 * 104.27875 * 206.07121 * 10 9 8 13 13 C 1.81399 * 104.44808 * 90.00319 * 10 9 8 14 14 C 1.52998 * 109.47108 * 180.02562 * 13 10 9 15 15 C 1.50706 * 109.47348 * 179.97438 * 14 13 10 16 16 H 1.08000 * 119.99302 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00436 * 179.72505 * 15 14 13 18 18 N 1.31514 * 120.00481 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99745 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.47209 * 90.00365 * 19 17 15 21 21 H 1.48506 * 109.47294 * 210.00213 * 19 17 15 22 22 H 1.48501 * 109.47275 * 330.00116 * 19 17 15 23 23 C 1.47072 * 87.88515 * 27.34121 * 9 8 7 24 24 H 1.08993 * 109.47665 * 59.99980 * 1 2 3 25 25 H 1.09003 * 109.47155 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.46879 * 299.99547 * 1 2 3 27 27 H 1.08995 * 109.46652 * 240.00368 * 2 1 3 28 28 H 1.08998 * 109.47203 * 120.00071 * 2 1 3 29 29 H 1.08998 * 109.47109 * 60.00037 * 4 3 2 30 30 H 1.08998 * 109.46944 * 299.99470 * 4 3 2 31 31 H 1.09000 * 109.46883 * 304.99619 * 5 4 3 32 32 H 1.08995 * 109.47113 * 184.99963 * 5 4 3 33 33 H 1.08996 * 113.41770 * 343.20058 * 7 6 5 34 34 H 1.08994 * 113.46819 * 105.56121 * 8 7 6 35 35 H 1.09007 * 113.46314 * 335.12758 * 8 7 6 36 36 H 1.09000 * 109.47516 * 59.99948 * 13 10 9 37 37 H 1.09002 * 109.46834 * 299.99504 * 13 10 9 38 38 H 1.09001 * 109.47671 * 59.99908 * 14 13 10 39 39 H 1.08998 * 109.47454 * 299.99906 * 14 13 10 40 40 H 0.96995 * 120.00207 * 179.97438 * 18 17 15 41 41 H 1.08995 * 113.46713 * 87.43744 * 23 9 8 42 42 H 1.08995 * 113.46738 * 217.87737 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8253 2.9385 -0.0012 6 8 3.3984 3.5458 1.2199 7 6 3.7202 4.9344 1.3218 8 6 3.9568 5.4219 2.7579 9 7 3.2229 6.6472 2.4077 10 16 3.2155 8.2210 2.9229 11 8 3.6743 8.1522 4.2660 12 8 1.9067 8.6832 2.6186 13 6 4.4424 9.0469 1.8726 14 6 4.5298 10.5254 2.2563 15 6 5.5495 11.2114 1.3842 16 1 6.0823 10.6489 0.6317 17 6 5.7986 12.5581 1.5433 18 7 6.6881 13.1569 0.7819 19 14 4.8714 13.5325 2.8396 20 1 5.6242 13.4955 4.1192 21 1 4.7268 14.9408 2.3909 22 1 3.5262 12.9360 3.0393 23 6 2.4939 5.8583 1.4032 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8333 0.9768 -0.8908 30 1 3.8340 0.9766 0.8892 31 1 3.3492 3.4412 -0.8430 32 1 4.9081 3.0256 -0.0912 33 1 4.4799 5.2564 0.6097 34 1 5.0075 5.5963 2.9895 35 1 3.4539 4.8148 3.5107 36 1 4.1442 8.9593 0.8278 37 1 5.4160 8.5773 2.0132 38 1 4.8282 10.6127 3.3010 39 1 3.5563 10.9953 2.1162 40 1 6.8630 14.1043 0.8936 41 1 1.6054 5.3664 1.7989 42 1 2.2982 6.4048 0.4806 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346559456.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:55:47 Heat of formation + Delta-G solvation = -156.232446 kcal Electronic energy + Delta-G solvation = -23115.509614 eV Core-core repulsion = 19416.507571 eV Total energy + Delta-G solvation = -3699.002043 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 307.133 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -40.70938 -39.04494 -38.21838 -37.36512 -37.09587 -35.91052 -33.48743 -32.62729 -30.27143 -28.52460 -27.82810 -27.00418 -23.63114 -23.47212 -23.27576 -22.06132 -19.90402 -19.35349 -18.55074 -18.19950 -17.79452 -17.32082 -17.09019 -16.69106 -16.43095 -16.05076 -15.99329 -15.38252 -15.16084 -14.84793 -14.78759 -14.43399 -14.03244 -13.82343 -13.55289 -13.32919 -13.22366 -13.22175 -13.11740 -13.08857 -12.98920 -12.68693 -12.33358 -12.24586 -12.14169 -12.01410 -11.95803 -11.77738 -11.71411 -11.29777 -10.85195 -10.50712 -10.38225 -10.08141 -8.37344 -6.42972 -0.85764 1.31370 1.33533 1.43355 1.57864 2.28733 2.68375 2.81440 2.86379 2.95960 2.97439 3.46460 3.65339 3.92422 3.99216 4.02151 4.19488 4.22078 4.32064 4.41287 4.48299 4.53689 4.55058 4.59843 4.61450 4.64542 4.68636 4.77157 4.82868 4.95671 4.97601 5.07196 5.07602 5.08271 5.30019 5.40678 5.47813 6.15652 6.25284 6.38630 6.62842 7.21324 8.77907 Molecular weight = 307.13amu Principal moments of inertia in cm(-1) A = 0.028815 B = 0.002570 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.477839 B =10891.666954 C =11323.455385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.411 6.411 4 C 0.059 3.941 5 C 0.054 3.946 6 O -0.378 6.378 7 C 0.064 3.936 8 C 0.121 3.879 9 N -1.049 6.049 10 S 2.646 3.354 11 O -0.988 6.988 12 O -0.990 6.990 13 C -0.577 4.577 14 C -0.019 4.019 15 C -0.525 4.525 16 H 0.052 0.948 17 C 0.013 3.987 18 N -0.938 5.938 19 Si 0.924 3.076 20 H -0.261 1.261 21 H -0.274 1.274 22 H -0.251 1.251 23 C 0.103 3.897 24 H 0.057 0.943 25 H 0.088 0.912 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.086 0.914 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.130 0.870 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.032 0.968 39 H 0.032 0.968 40 H 0.270 0.730 41 H 0.087 0.913 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.932 -28.278 -2.721 29.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.025 4.025 3 O -0.331 6.331 4 C -0.017 4.017 5 C -0.022 4.022 6 O -0.296 6.296 7 C 0.003 3.997 8 C -0.004 4.004 9 N -0.890 5.890 10 S 2.745 3.255 11 O -0.978 6.978 12 O -0.981 6.981 13 C -0.709 4.709 14 C -0.058 4.058 15 C -0.564 4.564 16 H 0.070 0.930 17 C -0.185 4.185 18 N -0.578 5.578 19 Si 0.747 3.253 20 H -0.185 1.185 21 H -0.199 1.199 22 H -0.175 1.175 23 C -0.022 4.022 24 H 0.076 0.924 25 H 0.107 0.893 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.104 0.896 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.148 0.852 34 H 0.118 0.882 35 H 0.109 0.891 36 H 0.160 0.840 37 H 0.162 0.838 38 H 0.050 0.950 39 H 0.050 0.950 40 H 0.079 0.921 41 H 0.105 0.895 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.649 -27.522 -1.822 28.623 hybrid contribution 0.498 0.849 -0.198 1.004 sum -7.151 -26.673 -2.020 27.689 Atomic orbital electron populations 1.21770 0.93613 1.03143 1.02410 1.22608 0.95954 0.83123 1.00821 1.87945 1.21899 1.27678 1.95596 1.22690 0.81345 0.95681 1.01987 1.22870 1.00010 0.92513 0.86851 1.87980 1.80625 1.21870 1.39119 1.24140 0.96802 0.81030 0.97723 1.22909 0.98260 0.81700 0.97515 1.59656 1.53801 1.21851 1.53697 1.03800 0.75219 0.71957 0.74484 1.93502 1.83794 1.85664 1.34863 1.93502 1.37922 1.80582 1.86053 1.30257 1.17483 1.07268 1.15938 1.19403 0.98128 0.90679 0.97615 1.21143 1.21777 0.94516 1.19012 0.92975 1.25859 0.95714 0.98952 0.98010 1.69997 1.34947 1.11783 1.41054 0.86039 0.80655 0.78613 0.80008 1.18519 1.19891 1.17483 1.23262 0.96980 0.90725 0.91244 0.92395 0.89290 0.92934 0.92107 0.92916 0.89627 0.92272 0.91975 0.88952 0.85227 0.88228 0.89140 0.83999 0.83806 0.95005 0.95008 0.92104 0.89512 0.89044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 10.28 71.98 0.74 -0.99 16 2 C 0.05 0.62 6.66 71.98 0.48 1.10 16 3 O -0.41 -7.25 10.31 -144.34 -1.49 -8.74 16 4 C 0.06 0.71 6.32 71.98 0.45 1.17 16 5 C 0.05 0.66 6.16 71.98 0.44 1.11 16 6 O -0.38 -6.71 10.36 -144.34 -1.49 -8.21 16 7 C 0.06 1.05 4.68 31.02 0.15 1.20 16 8 C 0.12 2.40 8.53 83.18 0.71 3.11 16 9 N -1.05 -26.89 4.10 -550.00 -2.25 -29.15 16 10 S 2.65 90.41 5.96 -56.49 -0.34 90.07 16 11 O -0.99 -39.09 18.07 -127.65 -2.31 -41.39 16 12 O -0.99 -39.80 18.07 -127.65 -2.31 -42.10 16 13 C -0.58 -20.37 6.12 71.98 0.44 -19.93 16 14 C -0.02 -0.89 4.05 29.85 0.12 -0.77 16 15 C -0.53 -29.43 9.66 25.60 0.25 -29.19 16 16 H 0.05 3.09 7.99 -2.91 -0.02 3.07 16 17 C 0.01 0.77 5.47 84.65 0.46 1.23 16 18 N -0.94 -57.32 13.96 21.45 0.30 -57.02 16 19 Si 0.92 43.89 27.47 68.60 1.88 45.78 16 20 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 21 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 22 H -0.25 -11.39 6.53 99.48 0.65 -10.74 16 23 C 0.10 2.16 8.54 83.27 0.71 2.87 16 24 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 27 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.13 1.54 7.88 -2.39 -0.02 1.52 16 34 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 36 H 0.14 4.49 8.14 -2.39 -0.02 4.47 16 37 H 0.14 4.50 8.14 -2.39 -0.02 4.48 16 38 H 0.03 1.46 7.58 -2.39 -0.02 1.44 16 39 H 0.03 1.48 7.18 -2.39 -0.02 1.47 16 40 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 41 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -77.79 366.58 -2.12 -79.91 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: 0.92 Total: 9.94 kcal Atomic # 6 Polarization: -44.04 SS G_CDS: 4.96 Total: -39.08 kcal Atomic # 7 Polarization: -84.22 SS G_CDS: -1.95 Total: -86.17 kcal Atomic # 8 Polarization: -92.85 SS G_CDS: -7.60 Total: -100.44 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.88 Total: 45.78 kcal Atomic # 16 Polarization: 90.41 SS G_CDS: -0.34 Total: 90.07 kcal Total: -77.79 -2.12 -79.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346559456.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.321 kcal (2) G-P(sol) polarization free energy of solvation -77.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds