Wall clock time and date at job start Fri Apr 10 2020 17:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35982 * 116.99687 * 2 1 4 4 C 1.38546 * 120.08365 * 0.02562 * 3 2 1 5 5 C 1.38248 * 120.01416 * 180.25062 * 4 3 2 6 6 C 1.38268 * 120.17468 * 359.45123 * 5 4 3 7 7 C 1.50704 * 119.91968 * 180.29643 * 6 5 4 8 8 C 1.38207 * 120.16488 * 0.55567 * 6 5 4 9 9 C 1.38713 * 119.98076 * 359.71845 * 8 6 5 10 10 N 1.40168 * 120.08509 * 179.97438 * 9 8 6 11 11 C 1.34780 * 120.00126 * 325.36492 * 10 9 8 12 12 O 1.21592 * 119.99654 * 4.45606 * 11 10 9 13 13 N 1.34774 * 119.99782 * 184.45300 * 11 10 9 14 14 C 1.46500 * 119.99680 * 179.97438 * 13 11 10 15 15 C 1.50709 * 109.46979 * 179.97438 * 14 13 11 16 16 O 1.21295 * 119.99823 * 359.97438 * 15 14 13 17 17 N 1.34768 * 119.99635 * 180.02562 * 15 14 13 18 18 C 1.37105 * 119.99676 * 180.02562 * 17 15 14 19 19 H 1.08001 * 120.00232 * 0.02562 * 18 17 15 20 20 C 1.38950 * 119.99948 * 179.97438 * 18 17 15 21 21 N 1.31409 * 120.00008 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00079 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47409 * 89.99653 * 22 20 18 24 24 H 1.48500 * 109.47369 * 210.00172 * 22 20 18 25 25 H 1.48506 * 109.46943 * 329.99963 * 22 20 18 26 26 H 1.08991 * 109.47433 * 59.99729 * 1 2 3 27 27 H 1.08999 * 109.46856 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46803 * 299.99748 * 1 2 3 29 29 H 1.07999 * 119.99161 * 359.97438 * 4 3 2 30 30 H 1.08002 * 119.91040 * 179.70474 * 5 4 3 31 31 H 1.09002 * 109.46922 * 270.25498 * 7 6 5 32 32 H 1.09001 * 109.47192 * 30.25266 * 7 6 5 33 33 H 1.08994 * 109.47264 * 150.25484 * 7 6 5 34 34 H 1.07992 * 120.01071 * 179.74570 * 8 6 5 35 35 H 0.96996 * 119.99995 * 145.36505 * 10 9 8 36 36 H 0.96995 * 120.00164 * 0.02562 * 13 11 10 37 37 H 1.09000 * 109.47326 * 299.99819 * 14 13 11 38 38 H 1.09000 * 109.47042 * 60.00214 * 14 13 11 39 39 H 0.96998 * 120.01015 * 359.97438 * 17 15 14 40 40 H 0.97008 * 120.00134 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2934 2.3747 0.0005 5 6 1.9224 3.6057 -0.0047 6 6 3.3031 3.6807 0.0010 7 6 3.9828 5.0258 0.0020 8 6 4.0614 2.5253 0.0003 9 6 3.4372 1.2865 -0.0001 10 7 4.2041 0.1133 -0.0014 11 6 5.3763 0.0751 -0.6654 12 8 5.8079 1.0808 -1.1953 13 7 6.0700 -1.0779 -0.7421 14 6 7.3439 -1.1195 -1.4644 15 6 7.9123 -2.5138 -1.4005 16 8 7.3124 -3.3867 -0.8093 17 7 9.0875 -2.7905 -1.9993 18 6 9.6043 -4.0591 -1.9416 19 1 9.0695 -4.8368 -1.4166 20 6 10.8157 -4.3446 -2.5595 21 7 11.4657 -3.3987 -3.1996 22 14 11.5195 -6.0731 -2.4815 23 1 11.0269 -6.8610 -3.6399 24 1 13.0024 -6.0062 -2.5230 25 1 11.0887 -6.7265 -1.2194 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.2148 2.3195 0.0005 30 1 1.3338 4.5112 -0.0091 31 1 4.1469 5.3507 -1.0255 32 1 3.3522 5.7512 0.5161 33 1 4.9408 4.9484 0.5159 34 1 5.1395 2.5868 0.0006 35 1 3.8912 -0.6711 0.4757 36 1 5.7255 -1.8802 -0.3197 37 1 7.1806 -0.8407 -2.5054 38 1 8.0441 -0.4208 -1.0067 39 1 9.5674 -2.0924 -2.4718 40 1 12.3113 -3.5981 -3.6312 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348151890.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:55:53 Heat of formation + Delta-G solvation = -76.490070 kcal Electronic energy + Delta-G solvation = -24179.636015 eV Core-core repulsion = 20380.940661 eV Total energy + Delta-G solvation = -3798.695354 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.87250 -39.58737 -38.27914 -37.65120 -34.93297 -34.42995 -33.70315 -31.85671 -31.38617 -30.01898 -28.07760 -27.39359 -26.04277 -24.56215 -22.92668 -21.40357 -20.61410 -19.60104 -18.61362 -18.28377 -17.91995 -17.01351 -16.30548 -15.96147 -15.57170 -15.38544 -14.99679 -14.59958 -14.47022 -14.20903 -14.17164 -14.05159 -13.75687 -13.70221 -13.42173 -12.57046 -12.40844 -12.20062 -12.13309 -11.97030 -11.70446 -11.62921 -11.38166 -11.13080 -11.05974 -10.45882 -10.33818 -10.30964 -9.92223 -9.63649 -8.88796 -8.63603 -8.54253 -8.10253 -7.80413 -6.51425 -3.93469 1.21436 1.28517 2.67051 3.06367 3.11750 3.22349 3.22969 3.27802 3.70423 3.75557 4.07912 4.32641 4.62520 4.73923 4.84659 4.87966 4.89931 5.01194 5.17234 5.17699 5.23963 5.28335 5.54879 5.57833 5.77556 5.82966 5.90106 5.97770 6.02555 6.06691 6.12041 6.40698 6.56817 6.69254 6.76500 7.01599 7.25253 7.46133 7.92233 8.11759 8.44865 8.67455 9.04627 9.39228 9.87047 10.65469 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.025537 B = 0.002503 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.197843 B =11182.237415 C =12139.498010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.318 6.318 3 C 0.091 3.909 4 C -0.188 4.188 5 C -0.103 4.103 6 C -0.105 4.105 7 C -0.108 4.108 8 C -0.085 4.085 9 C 0.149 3.851 10 N -0.680 5.680 11 C 0.705 3.295 12 O -0.583 6.583 13 N -0.718 5.718 14 C 0.128 3.872 15 C 0.428 3.572 16 O -0.597 6.597 17 N -0.549 5.549 18 C -0.305 4.305 19 H 0.105 0.895 20 C 0.026 3.974 21 N -0.895 5.895 22 Si 0.933 3.067 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.269 1.269 26 H 0.054 0.946 27 H 0.099 0.901 28 H 0.054 0.946 29 H 0.129 0.871 30 H 0.123 0.877 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.151 0.849 35 H 0.410 0.590 36 H 0.409 0.591 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.396 0.604 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.231 13.207 6.430 24.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.231 6.231 3 C 0.043 3.957 4 C -0.207 4.207 5 C -0.122 4.122 6 C -0.106 4.106 7 C -0.164 4.164 8 C -0.106 4.106 9 C 0.054 3.946 10 N -0.328 5.328 11 C 0.405 3.595 12 O -0.461 6.461 13 N -0.375 5.375 14 C 0.000 4.000 15 C 0.214 3.786 16 O -0.484 6.484 17 N -0.183 5.183 18 C -0.434 4.434 19 H 0.123 0.877 20 C -0.177 4.177 21 N -0.535 5.535 22 Si 0.760 3.240 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.193 1.193 26 H 0.073 0.927 27 H 0.117 0.883 28 H 0.072 0.928 29 H 0.147 0.853 30 H 0.141 0.859 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.168 0.832 35 H 0.246 0.754 36 H 0.246 0.754 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.230 0.770 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.858 13.238 6.194 23.859 hybrid contribution 0.079 -1.120 0.017 1.122 sum -18.779 12.118 6.211 23.197 Atomic orbital electron populations 1.23024 0.78375 1.03895 1.01181 1.86048 1.21343 1.26492 1.89254 1.18762 0.90433 0.84968 1.01511 1.20963 0.99623 0.91747 1.08374 1.20753 0.93910 0.96852 1.00697 1.19742 0.93333 0.95383 1.02104 1.20708 1.00353 0.93040 1.02346 1.21159 1.01614 0.89211 0.98613 1.16816 0.86212 0.86626 1.04985 1.42373 1.21152 1.14530 1.54741 1.15805 0.80149 0.84143 0.79353 1.90891 1.69739 1.33431 1.52044 1.44760 1.23187 1.11138 1.58396 1.20833 0.84532 0.97153 0.97519 1.19734 0.84055 0.89189 0.85630 1.90498 1.61385 1.48145 1.48378 1.41781 1.17978 1.12111 1.46467 1.19729 1.03647 0.87277 1.32776 0.87677 1.25326 0.96396 0.99852 0.96145 1.69615 1.16469 1.33137 1.34248 0.85813 0.77821 0.81410 0.78980 1.20263 1.20791 1.19317 0.92728 0.88273 0.92773 0.85299 0.85926 0.91244 0.91818 0.91489 0.83182 0.75399 0.75351 0.89808 0.89780 0.76993 0.91577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.53 10.06 -19.69 -0.20 -3.73 16 3 C 0.09 1.09 6.70 -39.08 -0.26 0.83 16 4 C -0.19 -1.88 9.04 -39.46 -0.36 -2.23 16 5 C -0.10 -1.01 9.69 -39.57 -0.38 -1.40 16 6 C -0.10 -1.18 5.88 -104.62 -0.62 -1.80 16 7 C -0.11 -0.95 10.01 36.01 0.36 -0.59 16 8 C -0.09 -1.17 8.35 -39.42 -0.33 -1.50 16 9 C 0.15 2.07 6.32 -83.48 -0.53 1.55 16 10 N -0.68 -9.56 5.20 -14.10 -0.07 -9.63 16 11 C 0.71 11.85 8.41 -86.92 -0.73 11.11 16 12 O -0.58 -11.19 13.76 5.29 0.07 -11.12 16 13 N -0.72 -12.24 5.53 -66.41 -0.37 -12.61 16 14 C 0.13 2.37 6.15 -5.19 -0.03 2.34 16 15 C 0.43 9.83 7.85 -10.99 -0.09 9.74 16 16 O -0.60 -15.29 15.24 5.54 0.08 -15.21 16 17 N -0.55 -13.60 5.29 -10.96 -0.06 -13.66 16 18 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 19 H 0.11 2.97 7.16 -52.49 -0.38 2.60 16 20 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 21 N -0.89 -23.90 13.05 55.50 0.72 -23.18 16 22 Si 0.93 20.55 29.55 -169.99 -5.02 15.53 16 23 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 24 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 26 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 27 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16 29 H 0.13 0.94 6.30 -52.49 -0.33 0.61 16 30 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 33 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 34 H 0.15 2.28 6.19 -52.49 -0.33 1.96 16 35 H 0.41 4.91 8.58 -40.82 -0.35 4.56 16 36 H 0.41 6.80 7.45 -40.82 -0.30 6.50 16 37 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 38 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 39 H 0.40 9.43 7.90 -40.82 -0.32 9.11 16 40 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 346.41 15.07 5.22 5.22 Total: -1.00 -32.27 346.41 -6.72 -38.99 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: -4.89 Total: 17.99 kcal Atomic # 6 Polarization: 13.62 SS G_CDS: -2.21 Total: 11.40 kcal Atomic # 7 Polarization: -59.30 SS G_CDS: 0.23 Total: -59.08 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -0.04 Total: -30.05 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.27 -6.72 -38.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348151890.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.502 kcal (2) G-P(sol) polarization free energy of solvation -32.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds