Wall clock time and date at job start Fri Apr 10 2020 17:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35982 * 116.99687 * 2 1 4 4 C 1.38546 * 120.08365 * 0.02562 * 3 2 1 5 5 C 1.38248 * 120.01416 * 180.25062 * 4 3 2 6 6 C 1.38268 * 120.17468 * 359.45123 * 5 4 3 7 7 C 1.50704 * 119.91968 * 180.29643 * 6 5 4 8 8 C 1.38207 * 120.16488 * 0.55567 * 6 5 4 9 9 C 1.38713 * 119.98076 * 359.71845 * 8 6 5 10 10 N 1.40168 * 120.08509 * 179.97438 * 9 8 6 11 11 C 1.34780 * 120.00126 * 325.36492 * 10 9 8 12 12 O 1.21592 * 119.99654 * 4.45606 * 11 10 9 13 13 N 1.34774 * 119.99782 * 184.45300 * 11 10 9 14 14 C 1.46500 * 119.99680 * 179.97438 * 13 11 10 15 15 C 1.50709 * 109.46979 * 179.97438 * 14 13 11 16 16 O 1.21295 * 119.99823 * 359.97438 * 15 14 13 17 17 N 1.34768 * 119.99635 * 180.02562 * 15 14 13 18 18 C 1.37105 * 119.99676 * 180.02562 * 17 15 14 19 19 H 1.08001 * 120.00232 * 0.02562 * 18 17 15 20 20 C 1.38950 * 119.99948 * 179.97438 * 18 17 15 21 21 N 1.31409 * 120.00008 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00079 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47409 * 89.99653 * 22 20 18 24 24 H 1.48500 * 109.47369 * 210.00172 * 22 20 18 25 25 H 1.48506 * 109.46943 * 329.99963 * 22 20 18 26 26 H 1.08991 * 109.47433 * 59.99729 * 1 2 3 27 27 H 1.08999 * 109.46856 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46803 * 299.99748 * 1 2 3 29 29 H 1.07999 * 119.99161 * 359.97438 * 4 3 2 30 30 H 1.08002 * 119.91040 * 179.70474 * 5 4 3 31 31 H 1.09002 * 109.46922 * 270.25498 * 7 6 5 32 32 H 1.09001 * 109.47192 * 30.25266 * 7 6 5 33 33 H 1.08994 * 109.47264 * 150.25484 * 7 6 5 34 34 H 1.07992 * 120.01071 * 179.74570 * 8 6 5 35 35 H 0.96996 * 119.99995 * 145.36505 * 10 9 8 36 36 H 0.96995 * 120.00164 * 0.02562 * 13 11 10 37 37 H 1.09000 * 109.47326 * 299.99819 * 14 13 11 38 38 H 1.09000 * 109.47042 * 60.00214 * 14 13 11 39 39 H 0.96998 * 120.01015 * 359.97438 * 17 15 14 40 40 H 0.97008 * 120.00134 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2934 2.3747 0.0005 5 6 1.9224 3.6057 -0.0047 6 6 3.3031 3.6807 0.0010 7 6 3.9828 5.0258 0.0020 8 6 4.0614 2.5253 0.0003 9 6 3.4372 1.2865 -0.0001 10 7 4.2041 0.1133 -0.0014 11 6 5.3763 0.0751 -0.6654 12 8 5.8079 1.0808 -1.1953 13 7 6.0700 -1.0779 -0.7421 14 6 7.3439 -1.1195 -1.4644 15 6 7.9123 -2.5138 -1.4005 16 8 7.3124 -3.3867 -0.8093 17 7 9.0875 -2.7905 -1.9993 18 6 9.6043 -4.0591 -1.9416 19 1 9.0695 -4.8368 -1.4166 20 6 10.8157 -4.3446 -2.5595 21 7 11.4657 -3.3987 -3.1996 22 14 11.5195 -6.0731 -2.4815 23 1 11.0269 -6.8610 -3.6399 24 1 13.0024 -6.0062 -2.5230 25 1 11.0887 -6.7265 -1.2194 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.2148 2.3195 0.0005 30 1 1.3338 4.5112 -0.0091 31 1 4.1469 5.3507 -1.0255 32 1 3.3522 5.7512 0.5161 33 1 4.9408 4.9484 0.5159 34 1 5.1395 2.5868 0.0006 35 1 3.8912 -0.6711 0.4757 36 1 5.7255 -1.8802 -0.3197 37 1 7.1806 -0.8407 -2.5054 38 1 8.0441 -0.4208 -1.0067 39 1 9.5674 -2.0924 -2.4718 40 1 12.3113 -3.5981 -3.6312 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348151890.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:55:52 Heat of formation + Delta-G solvation = -100.224144 kcal Electronic energy + Delta-G solvation = -24180.665202 eV Core-core repulsion = 20380.940661 eV Total energy + Delta-G solvation = -3799.724541 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.136 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.93596 -40.77406 -39.99551 -38.52184 -36.32574 -35.95754 -35.36448 -33.38483 -32.64237 -31.06552 -28.96411 -28.70673 -26.79878 -26.39226 -23.96734 -22.30091 -21.83531 -21.38013 -20.13431 -19.73347 -19.09897 -18.06343 -17.49591 -17.22409 -16.76439 -16.63783 -16.55332 -16.22143 -15.76787 -15.56107 -15.30189 -15.23856 -14.92856 -14.61035 -14.46216 -13.98557 -13.73159 -13.54794 -13.24837 -13.10685 -12.91145 -12.79729 -12.47997 -12.45945 -12.15307 -12.12285 -11.80471 -11.57534 -11.43184 -11.13183 -10.57390 -10.29324 -10.09634 -9.47665 -8.72389 -8.51397 -6.01679 0.31037 0.42347 1.36168 1.39822 1.45234 1.56411 1.88017 1.98900 2.27706 2.33990 2.80278 2.97088 3.15820 3.21199 3.88250 3.98765 4.14574 4.20313 4.32471 4.41697 4.43448 4.44278 4.46496 4.47833 4.76556 4.77472 4.89154 4.90688 5.06925 5.21070 5.23176 5.31354 5.38140 5.49221 5.72341 5.82743 5.89313 5.91825 6.44663 6.47434 6.85648 7.02982 7.35503 7.44535 7.93654 8.65560 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.025537 B = 0.002503 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.197843 B =11182.237415 C =12139.498010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.337 6.337 3 C 0.087 3.913 4 C -0.184 4.184 5 C -0.095 4.095 6 C -0.114 4.114 7 C -0.107 4.107 8 C -0.106 4.106 9 C 0.115 3.885 10 N -0.669 5.669 11 C 0.706 3.294 12 O -0.609 6.609 13 N -0.718 5.718 14 C 0.142 3.858 15 C 0.434 3.566 16 O -0.624 6.624 17 N -0.558 5.558 18 C -0.337 4.337 19 H 0.086 0.914 20 C -0.011 4.011 21 N -0.916 5.916 22 Si 0.997 3.003 23 H -0.270 1.270 24 H -0.271 1.271 25 H -0.270 1.270 26 H 0.064 0.936 27 H 0.113 0.887 28 H 0.071 0.929 29 H 0.161 0.839 30 H 0.157 0.843 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.126 0.874 35 H 0.418 0.582 36 H 0.411 0.589 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.399 0.601 40 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.061 14.016 6.605 26.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.251 6.251 3 C 0.039 3.961 4 C -0.203 4.203 5 C -0.113 4.113 6 C -0.115 4.115 7 C -0.163 4.163 8 C -0.127 4.127 9 C 0.020 3.980 10 N -0.317 5.317 11 C 0.406 3.594 12 O -0.489 6.489 13 N -0.375 5.375 14 C 0.013 3.987 15 C 0.221 3.779 16 O -0.512 6.512 17 N -0.194 5.194 18 C -0.466 4.466 19 H 0.104 0.896 20 C -0.211 4.211 21 N -0.556 5.556 22 Si 0.820 3.180 23 H -0.195 1.195 24 H -0.196 1.196 25 H -0.194 1.194 26 H 0.083 0.917 27 H 0.132 0.868 28 H 0.089 0.911 29 H 0.178 0.822 30 H 0.175 0.825 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.079 0.921 34 H 0.144 0.856 35 H 0.255 0.745 36 H 0.249 0.751 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.234 0.766 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.727 14.067 6.381 25.850 hybrid contribution 0.497 -1.299 -0.004 1.391 sum -20.230 12.768 6.377 24.758 Atomic orbital electron populations 1.23335 0.76179 1.05423 1.02453 1.86025 1.23651 1.26283 1.89137 1.18870 0.89880 0.86135 1.01189 1.21365 1.01136 0.90962 1.06788 1.21168 0.93398 0.98186 0.98594 1.20047 0.94271 0.95459 1.01708 1.20750 1.00448 0.92386 1.02743 1.21098 1.00769 0.90462 1.00347 1.17102 0.87303 0.86307 1.07332 1.42204 1.20219 1.15238 1.54043 1.15847 0.80712 0.83450 0.79355 1.90873 1.70594 1.34169 1.53295 1.44665 1.22825 1.11458 1.58544 1.20641 0.85317 0.94171 0.98525 1.20375 0.83142 0.90489 0.83939 1.90474 1.61950 1.49661 1.49150 1.41821 1.18689 1.11674 1.47178 1.19738 1.04687 0.87991 1.34228 0.89578 1.26133 0.96123 1.03626 0.95238 1.69681 1.16824 1.34743 1.34351 0.84868 0.77450 0.76771 0.78893 1.19546 1.19603 1.19449 0.91721 0.86832 0.91081 0.82155 0.82545 0.91041 0.89328 0.92115 0.85648 0.74464 0.75102 0.88825 0.88568 0.76637 0.91036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.34 -7.02 10.06 -93.35 -0.94 -7.96 16 3 C 0.09 1.98 6.70 22.60 0.15 2.14 16 4 C -0.18 -3.15 9.04 22.35 0.20 -2.95 16 5 C -0.09 -1.59 9.69 22.28 0.22 -1.37 16 6 C -0.11 -2.44 5.88 -19.86 -0.12 -2.56 16 7 C -0.11 -1.73 10.01 71.24 0.71 -1.02 16 8 C -0.11 -2.97 8.35 22.38 0.19 -2.79 16 9 C 0.11 3.20 6.32 38.17 0.24 3.44 16 10 N -0.67 -19.19 5.20 -316.79 -1.65 -20.84 16 11 C 0.71 24.22 8.41 179.05 1.51 25.72 16 12 O -0.61 -24.02 13.76 -4.00 -0.06 -24.07 16 13 N -0.72 -24.81 5.53 -482.28 -2.67 -27.48 16 14 C 0.14 5.30 6.15 85.64 0.53 5.83 16 15 C 0.43 20.22 7.85 87.66 0.69 20.91 16 16 O -0.62 -32.57 15.24 -3.08 -0.05 -32.62 16 17 N -0.56 -28.22 5.29 -306.98 -1.62 -29.84 16 18 C -0.34 -18.67 9.68 84.04 0.81 -17.85 16 19 H 0.09 5.01 7.16 -2.91 -0.02 4.99 16 20 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 21 N -0.92 -48.87 13.05 21.66 0.28 -48.59 16 22 Si 1.00 41.91 29.55 68.60 2.03 43.94 16 23 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 24 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 25 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 26 H 0.06 0.60 7.66 -2.39 -0.02 0.58 16 27 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.07 0.56 7.66 -2.39 -0.02 0.54 16 29 H 0.16 1.67 6.30 -2.91 -0.02 1.65 16 30 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 31 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.09 0.97 8.09 -2.39 -0.02 0.96 16 33 H 0.06 1.05 8.08 -2.39 -0.02 1.03 16 34 H 0.13 4.06 6.19 -2.91 -0.02 4.04 16 35 H 0.42 10.22 8.58 -92.71 -0.80 9.43 16 36 H 0.41 13.90 7.45 -92.71 -0.69 13.21 16 37 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 38 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 39 H 0.40 19.38 7.90 -92.71 -0.73 18.65 16 40 H 0.28 13.96 8.31 -92.70 -0.77 13.19 16 Total: -1.00 -70.18 346.41 0.94 -69.24 By element: Atomic # 1 Polarization: 48.56 SS G_CDS: -1.10 Total: 47.46 kcal Atomic # 6 Polarization: 24.05 SS G_CDS: 6.71 Total: 30.76 kcal Atomic # 7 Polarization: -121.09 SS G_CDS: -5.66 Total: -126.75 kcal Atomic # 8 Polarization: -63.61 SS G_CDS: -1.04 Total: -64.65 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -70.18 0.94 -69.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348151890.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.981 kcal (2) G-P(sol) polarization free energy of solvation -70.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds