Wall clock time and date at job start Fri Apr 10 2020 17:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35988 * 117.00212 * 2 1 4 4 C 1.38548 * 120.07838 * 0.02562 * 3 2 1 5 5 C 1.38245 * 120.01110 * 180.02562 * 4 3 2 6 6 C 1.50700 * 119.90971 * 179.97438 * 5 4 3 7 7 C 1.38271 * 120.17776 * 359.97438 * 5 4 3 8 8 C 1.38209 * 120.16424 * 359.68421 * 7 5 4 9 9 C 1.38712 * 119.98003 * 0.61678 * 8 7 5 10 10 N 1.40170 * 120.08928 * 179.67860 * 9 8 7 11 11 C 1.34779 * 119.99697 * 335.22860 * 10 9 8 12 12 O 1.21592 * 119.99910 * 354.36287 * 11 10 9 13 13 N 1.34776 * 119.99647 * 174.08725 * 11 10 9 14 14 C 1.46499 * 119.99650 * 180.27550 * 13 11 10 15 15 C 1.50696 * 109.47037 * 180.02562 * 14 13 11 16 16 O 1.21292 * 119.99925 * 359.97438 * 15 14 13 17 17 N 1.34782 * 120.00253 * 179.97438 * 15 14 13 18 18 C 1.37097 * 120.00283 * 179.97438 * 17 15 14 19 19 H 1.08004 * 119.99899 * 0.02562 * 18 17 15 20 20 C 1.38941 * 120.00346 * 179.97438 * 18 17 15 21 21 N 1.31420 * 119.99813 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00363 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47105 * 60.00404 * 22 20 18 24 24 H 1.48500 * 109.47365 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47137 * 300.00059 * 22 20 18 26 26 H 1.08996 * 109.47351 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47217 * 300.00000 * 1 2 3 28 28 H 1.09003 * 109.47135 * 60.00102 * 1 2 3 29 29 H 1.07993 * 119.99309 * 359.97438 * 4 3 2 30 30 H 1.09001 * 109.47195 * 89.99859 * 6 5 4 31 31 H 1.09006 * 109.46928 * 209.99404 * 6 5 4 32 32 H 1.08993 * 109.47284 * 329.99308 * 6 5 4 33 33 H 1.07999 * 119.91949 * 179.97438 * 7 5 4 34 34 H 1.07994 * 120.01029 * 180.30205 * 8 7 5 35 35 H 0.96996 * 120.00120 * 155.22212 * 10 9 8 36 36 H 0.96999 * 120.00285 * 0.27139 * 13 11 10 37 37 H 1.09002 * 109.47238 * 299.99898 * 14 13 11 38 38 H 1.08999 * 109.47119 * 59.99884 * 14 13 11 39 39 H 0.96999 * 119.99877 * 0.02562 * 17 15 14 40 40 H 0.96997 * 119.99668 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2934 2.3747 0.0005 5 6 1.9225 3.6057 0.0000 6 6 1.1013 4.8693 0.0000 7 6 3.3032 3.6807 -0.0005 8 6 4.0614 2.5251 0.0060 9 6 3.4372 1.2864 0.0003 10 7 4.2040 0.1131 0.0001 11 6 5.4618 0.1301 -0.4840 12 8 5.8957 1.1349 -1.0136 13 7 6.2402 -0.9648 -0.3760 14 6 7.6094 -0.9443 -0.8968 15 6 8.2596 -2.2816 -0.6529 16 8 7.6405 -3.1649 -0.0982 17 7 9.5292 -2.4964 -1.0512 18 6 10.1210 -3.7129 -0.8289 19 1 9.5697 -4.4993 -0.3349 20 6 11.4296 -3.9344 -1.2399 21 7 12.1003 -2.9776 -1.8414 22 14 12.2357 -5.5922 -0.9376 23 1 11.4587 -6.6535 -1.6269 24 1 13.6233 -5.5717 -1.4661 25 1 12.2661 -5.8692 0.5210 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 0.2149 2.3195 0.0005 30 1 0.9036 5.1741 1.0277 31 1 1.6494 5.6588 -0.5142 32 1 0.1570 4.6889 -0.5135 33 1 3.7903 4.6445 -0.0014 34 1 5.1396 2.5866 0.0105 35 1 3.8296 -0.7111 0.3485 36 1 5.8940 -1.7663 0.0466 37 1 7.5878 -0.7410 -1.9675 38 1 8.1791 -0.1651 -0.3905 39 1 10.0245 -1.7899 -1.4945 40 1 13.0139 -3.1322 -2.1281 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348898414.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:55:57 Heat of formation + Delta-G solvation = -75.243863 kcal Electronic energy + Delta-G solvation = -24084.481373 eV Core-core repulsion = 20285.840058 eV Total energy + Delta-G solvation = -3798.641315 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.136 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.90559 -39.63027 -38.28557 -37.60546 -35.09464 -34.45135 -33.73667 -31.57491 -31.31667 -30.24672 -28.17085 -27.64741 -25.92318 -24.41090 -22.73908 -21.76860 -20.61334 -19.61175 -18.57673 -18.24464 -17.80509 -17.21267 -16.22588 -15.97039 -15.53941 -15.44761 -15.13863 -14.66518 -14.39732 -14.16876 -14.13349 -13.95045 -13.85013 -13.78209 -13.43025 -12.69575 -12.47871 -12.22300 -12.20229 -11.97876 -11.65455 -11.61615 -11.44852 -11.17450 -11.10172 -10.50787 -10.35315 -10.31159 -9.87732 -9.62996 -8.87735 -8.64484 -8.62897 -8.10529 -7.70588 -6.51517 -3.93681 1.20704 1.32398 2.65105 3.04465 3.13521 3.19713 3.21708 3.25640 3.72400 3.77313 4.07667 4.31736 4.57730 4.73356 4.84089 4.87083 4.88810 4.94392 5.14129 5.16961 5.22287 5.36424 5.41269 5.47836 5.66846 5.78150 5.88510 5.97039 6.00619 6.05614 6.16137 6.45184 6.52609 6.66900 6.78308 7.02048 7.24698 7.45776 7.91637 8.09562 8.44518 8.64552 9.04246 9.38752 9.86620 10.65254 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.032136 B = 0.002354 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.090416 B =11891.814120 C =12660.620656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.319 6.319 3 C 0.092 3.908 4 C -0.187 4.187 5 C -0.078 4.078 6 C -0.110 4.110 7 C -0.132 4.132 8 C -0.094 4.094 9 C 0.147 3.853 10 N -0.678 5.678 11 C 0.705 3.295 12 O -0.581 6.581 13 N -0.717 5.717 14 C 0.127 3.873 15 C 0.428 3.572 16 O -0.598 6.598 17 N -0.548 5.548 18 C -0.305 4.305 19 H 0.105 0.895 20 C 0.026 3.974 21 N -0.894 5.894 22 Si 0.934 3.066 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.272 1.272 26 H 0.099 0.901 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.129 0.871 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.126 0.874 34 H 0.157 0.843 35 H 0.411 0.589 36 H 0.409 0.591 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.396 0.604 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.395 12.201 3.573 24.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.233 6.233 3 C 0.045 3.955 4 C -0.207 4.207 5 C -0.079 4.079 6 C -0.167 4.167 7 C -0.151 4.151 8 C -0.115 4.115 9 C 0.051 3.949 10 N -0.324 5.324 11 C 0.405 3.595 12 O -0.460 6.460 13 N -0.374 5.374 14 C -0.001 4.001 15 C 0.213 3.787 16 O -0.484 6.484 17 N -0.183 5.183 18 C -0.435 4.435 19 H 0.123 0.877 20 C -0.177 4.177 21 N -0.534 5.534 22 Si 0.761 3.239 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.198 1.198 26 H 0.117 0.883 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.146 0.854 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.143 0.857 34 H 0.174 0.826 35 H 0.247 0.753 36 H 0.247 0.753 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.230 0.770 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -21.000 12.237 3.373 24.538 hybrid contribution 0.174 -1.095 0.133 1.116 sum -20.826 11.142 3.506 23.878 Atomic orbital electron populations 1.23016 0.78310 1.03871 1.01204 1.86021 1.21421 1.26515 1.89364 1.18618 0.90206 0.84931 1.01737 1.20814 0.99458 0.91210 1.09191 1.19642 0.94011 0.94387 0.99864 1.20745 0.99124 0.94678 1.02151 1.20875 0.92757 0.98291 1.03150 1.21401 1.02246 0.89474 0.98363 1.16890 0.86311 0.86741 1.04966 1.42419 1.13283 1.11681 1.65040 1.15803 0.80384 0.84054 0.79262 1.90864 1.73594 1.32205 1.49311 1.44784 1.13840 1.15186 1.63613 1.20838 0.81448 0.97660 1.00123 1.19728 0.83808 0.89104 0.86020 1.90497 1.63815 1.45757 1.48366 1.41776 1.10620 1.14886 1.51004 1.19677 0.96054 0.90956 1.36803 0.87725 1.25330 0.96489 0.99522 0.96379 1.69610 1.11976 1.32979 1.38883 0.85865 0.77879 0.81250 0.78921 1.19777 1.20854 1.19777 0.88271 0.92756 0.92742 0.85370 0.91286 0.91430 0.91866 0.85654 0.82551 0.75307 0.75330 0.89773 0.89727 0.76985 0.91519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.49 9.91 -19.70 -0.20 -3.68 16 3 C 0.09 1.11 6.70 -39.08 -0.26 0.85 16 4 C -0.19 -1.90 8.69 -39.46 -0.34 -2.24 16 5 C -0.08 -0.78 5.88 -104.61 -0.62 -1.40 16 6 C -0.11 -0.76 10.01 36.01 0.36 -0.40 16 7 C -0.13 -1.49 9.69 -39.58 -0.38 -1.88 16 8 C -0.09 -1.30 8.72 -39.42 -0.34 -1.65 16 9 C 0.15 2.05 6.45 -83.48 -0.54 1.51 16 10 N -0.68 -9.52 5.30 -14.10 -0.07 -9.60 16 11 C 0.70 11.75 8.37 -86.92 -0.73 11.02 16 12 O -0.58 -11.05 13.51 5.28 0.07 -10.98 16 13 N -0.72 -12.14 5.53 -66.42 -0.37 -12.51 16 14 C 0.13 2.35 6.15 -5.20 -0.03 2.32 16 15 C 0.43 9.78 7.85 -10.99 -0.09 9.70 16 16 O -0.60 -15.26 15.24 5.55 0.08 -15.17 16 17 N -0.55 -13.55 5.29 -10.97 -0.06 -13.61 16 18 C -0.31 -8.29 9.68 -14.94 -0.14 -8.43 16 19 H 0.10 2.95 7.16 -52.48 -0.38 2.57 16 20 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 21 N -0.89 -23.85 13.05 55.50 0.72 -23.12 16 22 Si 0.93 20.53 29.55 -169.99 -5.02 15.51 16 23 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 24 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 26 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.30 7.66 -51.92 -0.40 -0.10 16 28 H 0.05 0.32 7.66 -51.93 -0.40 -0.07 16 29 H 0.13 0.97 6.30 -52.49 -0.33 0.64 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 32 H 0.06 0.37 8.08 -51.93 -0.42 -0.05 16 33 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 34 H 0.16 2.41 5.79 -52.49 -0.30 2.11 16 35 H 0.41 4.97 8.36 -40.82 -0.34 4.62 16 36 H 0.41 6.75 7.46 -40.82 -0.30 6.45 16 37 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 38 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 39 H 0.40 9.41 7.90 -40.82 -0.32 9.09 16 40 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 345.59 15.07 5.21 5.21 Total: -1.00 -32.05 345.59 -6.71 -38.76 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: -4.86 Total: 18.02 kcal Atomic # 6 Polarization: 13.40 SS G_CDS: -2.22 Total: 11.18 kcal Atomic # 7 Polarization: -59.07 SS G_CDS: 0.22 Total: -58.84 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: -0.04 Total: -29.84 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.05 -6.71 -38.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348898414.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.480 kcal (2) G-P(sol) polarization free energy of solvation -32.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds