Wall clock time and date at job start Fri Apr 10 2020 17:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.35868 * 126.28521 * 2 1 4 4 C 1.41263 * 104.18917 * 179.86934 * 3 2 1 5 5 N 1.34155 * 127.14937 * 180.13700 * 4 3 2 6 6 C 1.32744 * 119.99863 * 180.32589 * 5 4 3 7 7 O 1.21864 * 119.99983 * 0.02562 * 6 5 4 8 8 C 1.49137 * 119.99706 * 179.97438 * 6 5 4 9 9 O 1.21397 * 120.00485 * 354.66956 * 8 6 5 10 10 N 1.34781 * 119.99616 * 174.67075 * 8 6 5 11 11 C 1.46496 * 120.00348 * 4.02042 * 10 8 6 12 12 C 1.50700 * 109.47117 * 83.12686 * 11 10 8 13 13 H 1.07999 * 119.99886 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00090 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00034 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99965 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47046 * 89.99851 * 16 14 12 18 18 H 1.48502 * 109.46825 * 209.99925 * 16 14 12 19 19 H 1.48495 * 109.47021 * 329.99607 * 16 14 12 20 20 C 1.46498 * 119.99865 * 184.02079 * 10 8 6 21 21 C 1.52999 * 109.47157 * 85.15595 * 20 10 8 22 22 C 1.52999 * 117.50011 * 243.62056 * 21 20 10 23 23 C 1.53002 * 60.00194 * 252.51132 * 22 21 20 24 24 N 1.35082 * 105.69891 * 0.38606 * 4 3 2 25 25 H 0.96998 * 124.69844 * 179.78539 * 24 4 3 26 26 O 1.20967 * 110.59935 * 359.74939 * 24 4 3 27 27 H 1.09006 * 109.46522 * 179.71424 * 1 2 3 28 28 H 1.08989 * 109.47050 * 299.71653 * 1 2 3 29 29 H 1.09001 * 109.46740 * 59.72108 * 1 2 3 30 30 H 1.08000 * 127.91093 * 359.97438 * 3 2 1 31 31 H 1.08996 * 109.47546 * 203.13205 * 11 10 8 32 32 H 1.09000 * 109.46693 * 323.12981 * 11 10 8 33 33 H 0.97000 * 120.00397 * 179.97438 * 15 14 12 34 34 H 1.08996 * 109.47280 * 205.15876 * 20 10 8 35 35 H 1.09003 * 109.47607 * 325.15831 * 20 10 8 36 36 H 1.08995 * 115.54985 * 29.33263 * 21 20 10 37 37 H 1.09001 * 117.50295 * 0.02562 * 22 21 20 38 38 H 1.09001 * 117.50005 * 145.02105 * 22 21 20 39 39 H 1.08995 * 117.49718 * 252.50696 * 23 22 21 40 40 H 1.08997 * 117.49927 * 107.48864 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3112 1.0952 0.0000 4 6 3.6200 0.5638 0.0031 5 7 4.7729 1.2499 0.0069 6 6 5.9311 0.6013 0.0029 7 8 5.9472 -0.6172 -0.0045 8 6 7.2127 1.3640 0.0065 9 8 7.1991 2.5745 -0.0846 10 7 8.3862 0.7093 0.1110 11 6 8.4085 -0.7554 0.1322 12 6 8.3614 -1.2790 -1.2801 13 1 8.3195 -0.5898 -2.1104 14 6 8.3718 -2.6381 -1.5121 15 7 8.4233 -3.4775 -0.5010 16 14 8.3142 -3.2872 -3.2628 17 1 9.6978 -3.4393 -3.7801 18 1 7.6316 -4.6059 -3.2795 19 1 7.5672 -2.3323 -4.1204 20 6 9.6394 1.4623 0.2033 21 6 9.8965 1.8479 1.6614 22 6 9.9153 3.3387 2.0051 23 6 11.2212 2.5416 1.9856 24 7 3.4696 -0.7786 -0.0041 25 1 4.2006 -1.4161 -0.0070 26 8 2.2969 -1.0754 -0.0057 27 1 -0.3632 -1.0277 -0.0051 28 1 -0.3633 0.5094 0.8924 29 1 -0.3633 0.5182 -0.8875 30 1 2.0170 2.1344 -0.0004 31 1 9.3229 -1.0979 0.6165 32 1 7.5446 -1.1238 0.6854 33 1 8.4303 -4.4336 -0.6642 34 1 10.4615 0.8455 -0.1598 35 1 9.5667 2.3647 -0.4038 36 1 9.4908 1.1642 2.4070 37 1 9.7441 4.0448 1.1926 38 1 9.5216 3.6361 2.9771 39 1 11.6866 2.3147 2.9447 40 1 11.9094 2.7233 1.1602 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349403273.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:55:59 Heat of formation + Delta-G solvation = 76.921067 kcal Electronic energy + Delta-G solvation = -25514.645869 eV Core-core repulsion = 21722.602921 eV Total energy + Delta-G solvation = -3792.042948 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.136 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.43542 -39.74633 -38.04903 -36.64979 -35.24377 -34.56597 -34.10598 -32.29637 -31.02985 -28.96372 -27.86110 -26.59550 -24.29779 -23.25647 -22.68597 -22.00342 -21.28884 -20.30212 -19.39077 -18.17260 -17.89368 -16.56870 -16.43023 -15.93391 -15.50951 -14.90926 -14.78033 -14.41777 -14.31506 -13.98423 -13.95355 -13.89235 -13.73152 -13.30631 -12.77675 -12.57438 -12.20366 -11.87506 -11.54113 -11.39414 -11.23683 -11.18749 -10.94057 -10.81755 -10.45873 -10.17754 -10.03468 -9.95293 -9.58151 -9.52873 -9.23432 -8.53649 -8.07231 -7.95662 -7.54249 -5.97832 -3.98838 0.69912 1.78193 1.98080 3.10329 3.28953 3.30225 3.36084 3.41161 3.56035 4.10949 4.23954 4.44336 4.52545 4.59822 4.84806 4.93553 4.97888 5.15476 5.24019 5.31710 5.37045 5.39715 5.46481 5.70976 5.84357 5.91250 6.03308 6.17787 6.21713 6.27098 6.43797 6.60985 6.66549 6.93375 7.42018 7.62472 7.82734 7.87022 7.96353 8.30826 8.35295 8.74933 9.01705 9.18880 9.62613 11.10504 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.009810 B = 0.005523 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2853.551985 B = 5068.367571 C = 7416.023595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.067 3.933 3 C -0.238 4.238 4 C 0.416 3.584 5 N -0.604 5.604 6 C 0.469 3.531 7 O -0.515 6.515 8 C 0.525 3.475 9 O -0.536 6.536 10 N -0.572 5.572 11 C 0.225 3.775 12 C -0.508 4.508 13 H 0.052 0.948 14 C 0.065 3.935 15 N -0.894 5.894 16 Si 0.890 3.110 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.149 3.851 21 C -0.161 4.161 22 C -0.172 4.172 23 C -0.180 4.180 24 N -0.505 5.505 25 H 0.479 0.521 26 O 0.002 5.998 27 H 0.087 0.913 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.191 0.809 31 H 0.027 0.973 32 H 0.074 0.926 33 H 0.260 0.740 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.661 6.641 4.032 15.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.008 3.992 3 C -0.261 4.261 4 C 0.165 3.835 5 N -0.370 5.370 6 C 0.252 3.748 7 O -0.392 6.392 8 C 0.308 3.692 9 O -0.414 6.414 10 N -0.304 5.304 11 C 0.106 3.894 12 C -0.547 4.547 13 H 0.070 0.930 14 C -0.136 4.136 15 N -0.533 5.533 16 Si 0.718 3.282 17 H -0.206 1.206 18 H -0.213 1.213 19 H -0.202 1.202 20 C 0.025 3.975 21 C -0.180 4.180 22 C -0.209 4.209 23 C -0.218 4.218 24 N -0.183 5.183 25 H 0.346 0.654 26 O -0.009 6.009 27 H 0.106 0.894 28 H 0.121 0.879 29 H 0.121 0.879 30 H 0.208 0.792 31 H 0.045 0.955 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.121 0.879 37 H 0.114 0.886 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.328 6.647 4.014 15.425 hybrid contribution 0.534 -1.457 -1.013 1.853 sum -12.794 5.189 3.002 14.129 Atomic orbital electron populations 1.20569 0.82339 1.05390 1.05232 1.23973 0.95287 0.83793 0.96165 1.21680 0.88443 1.01176 1.14785 1.21810 0.96388 0.79061 0.86206 1.70093 0.94658 1.32618 1.39602 1.21137 0.89764 0.86574 0.77351 1.90598 1.88477 1.16015 1.44104 1.19307 0.84500 0.86941 0.78487 1.90618 1.87302 1.13795 1.49698 1.48220 1.03956 1.10168 1.68029 1.20011 0.99530 0.71582 0.98315 1.21326 1.49832 0.91568 0.92019 0.92950 1.24809 0.95416 0.96674 0.96706 1.69933 1.51082 1.02341 1.29981 0.86632 0.78120 0.78133 0.85307 1.20646 1.21289 1.20178 1.20932 0.86698 0.96759 0.93068 1.22777 1.00715 0.95541 0.99002 1.22952 1.00595 0.94675 1.02709 1.22908 0.90963 1.05280 1.02631 1.44781 0.96599 1.11034 1.65916 0.65438 1.83925 1.06485 1.32047 1.78421 0.89421 0.87896 0.87892 0.79202 0.95455 0.90847 0.93074 0.89705 0.90825 0.87933 0.88619 0.89499 0.89191 0.88898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.25 10.44 36.01 0.38 0.12 16 2 C 0.07 0.58 7.44 -35.15 -0.26 0.32 16 3 C -0.24 -2.66 11.08 -39.28 -0.44 -3.09 16 4 C 0.42 6.94 7.77 -156.36 -1.22 5.72 16 5 N -0.60 -12.77 10.34 -12.34 -0.13 -12.90 16 6 C 0.47 11.17 7.64 -12.63 -0.10 11.08 16 7 O -0.51 -12.71 9.79 5.04 0.05 -12.66 16 8 C 0.52 12.95 7.63 -11.73 -0.09 12.86 16 9 O -0.54 -13.60 16.54 5.46 0.09 -13.51 16 10 N -0.57 -13.63 2.49 -175.69 -0.44 -14.07 16 11 C 0.22 5.96 4.75 -5.20 -0.02 5.93 16 12 C -0.51 -14.55 8.35 -34.44 -0.29 -14.84 16 13 H 0.05 1.54 7.81 -52.49 -0.41 1.13 16 14 C 0.07 1.86 5.46 -17.82 -0.10 1.77 16 15 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 16 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 19 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 20 C 0.15 3.01 5.64 -4.04 -0.02 2.98 16 21 C -0.16 -2.83 5.98 -90.62 -0.54 -3.37 16 22 C -0.17 -2.67 10.18 -26.73 -0.27 -2.94 16 23 C -0.18 -2.55 10.25 -26.73 -0.27 -2.82 16 24 N -0.50 -7.81 6.47 31.11 0.20 -7.61 16 25 H 0.48 8.43 6.28 -40.82 -0.26 8.18 16 26 O 0.00 0.03 11.14 18.74 0.21 0.24 16 27 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.10 0.16 8.14 -51.94 -0.42 -0.26 16 29 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.19 1.62 8.06 -52.49 -0.42 1.20 16 31 H 0.03 0.75 8.02 -51.93 -0.42 0.33 16 32 H 0.07 2.09 5.37 -51.93 -0.28 1.81 16 33 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 34 H 0.08 1.67 8.03 -51.93 -0.42 1.25 16 35 H 0.07 1.48 7.25 -51.93 -0.38 1.10 16 36 H 0.10 1.90 8.14 -51.93 -0.42 1.48 16 37 H 0.10 1.52 8.03 -51.93 -0.42 1.10 16 38 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 347.66 15.07 5.24 5.24 Total: -1.00 -36.08 347.66 -7.39 -43.48 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -5.09 Total: 6.55 kcal Atomic # 6 Polarization: 16.97 SS G_CDS: -3.24 Total: 13.73 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: 0.37 Total: -60.14 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: 0.35 Total: -25.93 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -36.08 -7.39 -43.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349403273.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.397 kcal (2) G-P(sol) polarization free energy of solvation -36.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds