Wall clock time and date at job start Fri Apr 10 2020 17:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.35868 * 126.28521 * 2 1 4 4 C 1.41263 * 104.18917 * 179.86934 * 3 2 1 5 5 N 1.34155 * 127.14937 * 180.13700 * 4 3 2 6 6 C 1.32744 * 119.99863 * 180.32589 * 5 4 3 7 7 O 1.21864 * 119.99983 * 0.02562 * 6 5 4 8 8 C 1.49137 * 119.99706 * 179.97438 * 6 5 4 9 9 O 1.21397 * 120.00485 * 354.66956 * 8 6 5 10 10 N 1.34781 * 119.99616 * 174.67075 * 8 6 5 11 11 C 1.46496 * 120.00348 * 4.02042 * 10 8 6 12 12 C 1.50700 * 109.47117 * 83.12686 * 11 10 8 13 13 H 1.07999 * 119.99886 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00090 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00034 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99965 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47046 * 89.99851 * 16 14 12 18 18 H 1.48502 * 109.46825 * 209.99925 * 16 14 12 19 19 H 1.48495 * 109.47021 * 329.99607 * 16 14 12 20 20 C 1.46498 * 119.99865 * 184.02079 * 10 8 6 21 21 C 1.52999 * 109.47157 * 85.15595 * 20 10 8 22 22 C 1.52999 * 117.50011 * 243.62056 * 21 20 10 23 23 C 1.53002 * 60.00194 * 252.51132 * 22 21 20 24 24 N 1.35082 * 105.69891 * 0.38606 * 4 3 2 25 25 H 0.96998 * 124.69844 * 179.78539 * 24 4 3 26 26 O 1.20967 * 110.59935 * 359.74939 * 24 4 3 27 27 H 1.09006 * 109.46522 * 179.71424 * 1 2 3 28 28 H 1.08989 * 109.47050 * 299.71653 * 1 2 3 29 29 H 1.09001 * 109.46740 * 59.72108 * 1 2 3 30 30 H 1.08000 * 127.91093 * 359.97438 * 3 2 1 31 31 H 1.08996 * 109.47546 * 203.13205 * 11 10 8 32 32 H 1.09000 * 109.46693 * 323.12981 * 11 10 8 33 33 H 0.97000 * 120.00397 * 179.97438 * 15 14 12 34 34 H 1.08996 * 109.47280 * 205.15876 * 20 10 8 35 35 H 1.09003 * 109.47607 * 325.15831 * 20 10 8 36 36 H 1.08995 * 115.54985 * 29.33263 * 21 20 10 37 37 H 1.09001 * 117.50295 * 0.02562 * 22 21 20 38 38 H 1.09001 * 117.50005 * 145.02105 * 22 21 20 39 39 H 1.08995 * 117.49718 * 252.50696 * 23 22 21 40 40 H 1.08997 * 117.49927 * 107.48864 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3112 1.0952 0.0000 4 6 3.6200 0.5638 0.0031 5 7 4.7729 1.2499 0.0069 6 6 5.9311 0.6013 0.0029 7 8 5.9472 -0.6172 -0.0045 8 6 7.2127 1.3640 0.0065 9 8 7.1991 2.5745 -0.0846 10 7 8.3862 0.7093 0.1110 11 6 8.4085 -0.7554 0.1322 12 6 8.3614 -1.2790 -1.2801 13 1 8.3195 -0.5898 -2.1104 14 6 8.3718 -2.6381 -1.5121 15 7 8.4233 -3.4775 -0.5010 16 14 8.3142 -3.2872 -3.2628 17 1 9.6978 -3.4393 -3.7801 18 1 7.6316 -4.6059 -3.2795 19 1 7.5672 -2.3323 -4.1204 20 6 9.6394 1.4623 0.2033 21 6 9.8965 1.8479 1.6614 22 6 9.9153 3.3387 2.0051 23 6 11.2212 2.5416 1.9856 24 7 3.4696 -0.7786 -0.0041 25 1 4.2006 -1.4161 -0.0070 26 8 2.2969 -1.0754 -0.0057 27 1 -0.3632 -1.0277 -0.0051 28 1 -0.3633 0.5094 0.8924 29 1 -0.3633 0.5182 -0.8875 30 1 2.0170 2.1344 -0.0004 31 1 9.3229 -1.0979 0.6165 32 1 7.5446 -1.1238 0.6854 33 1 8.4303 -4.4336 -0.6642 34 1 10.4615 0.8455 -0.1598 35 1 9.5667 2.3647 -0.4038 36 1 9.4908 1.1642 2.4070 37 1 9.7441 4.0448 1.1926 38 1 9.5216 3.6361 2.9771 39 1 11.6866 2.3147 2.9447 40 1 11.9094 2.7233 1.1602 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349403273.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:55:59 Heat of formation + Delta-G solvation = 51.656132 kcal Electronic energy + Delta-G solvation = -25515.741439 eV Core-core repulsion = 21722.602921 eV Total energy + Delta-G solvation = -3793.138518 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.136 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -46.62314 -41.48430 -39.67803 -38.15668 -36.81950 -35.94269 -35.27859 -34.41901 -32.42621 -29.76096 -29.59116 -28.47347 -25.90553 -24.80101 -24.28909 -23.19963 -22.56697 -21.61242 -20.83146 -19.47122 -19.31465 -18.67893 -18.06663 -17.64330 -17.04118 -16.59778 -16.44484 -15.93723 -15.85023 -15.41952 -15.09277 -14.89983 -14.51781 -14.49357 -14.24901 -14.01770 -13.69119 -13.42536 -13.06006 -13.01204 -12.83618 -12.76750 -12.62863 -12.41249 -12.34668 -12.00304 -11.76433 -11.33930 -11.00316 -10.91667 -10.82794 -10.64429 -9.91068 -9.55094 -9.25912 -8.16627 -6.26042 -0.45768 0.53617 0.88571 1.32692 1.33758 1.43511 1.49989 1.90049 2.26649 2.37890 2.77968 2.87575 3.10707 3.14171 3.51993 3.72680 3.82101 3.98321 4.10412 4.12889 4.34336 4.56803 4.60584 4.72413 4.74342 4.78478 4.79519 4.88932 4.92487 5.00257 5.15405 5.25156 5.25460 5.27119 5.39808 5.61804 5.80095 6.10953 6.19010 6.37686 6.71753 6.79505 7.02139 7.38824 7.45039 8.91106 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.009810 B = 0.005523 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2853.551985 B = 5068.367571 C = 7416.023595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.107 3.893 3 C -0.248 4.248 4 C 0.390 3.610 5 N -0.637 5.637 6 C 0.457 3.543 7 O -0.551 6.551 8 C 0.515 3.485 9 O -0.552 6.552 10 N -0.575 5.575 11 C 0.245 3.755 12 C -0.521 4.521 13 H 0.036 0.964 14 C 0.021 3.979 15 N -0.920 5.920 16 Si 0.954 3.046 17 H -0.268 1.268 18 H -0.276 1.276 19 H -0.282 1.282 20 C 0.147 3.853 21 C -0.190 4.190 22 C -0.169 4.169 23 C -0.148 4.148 24 N -0.506 5.506 25 H 0.471 0.529 26 O 0.012 5.988 27 H 0.103 0.897 28 H 0.132 0.868 29 H 0.130 0.870 30 H 0.219 0.781 31 H 0.013 0.987 32 H 0.054 0.946 33 H 0.264 0.736 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.112 0.888 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.973 6.824 3.734 17.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.047 3.953 3 C -0.271 4.271 4 C 0.144 3.856 5 N -0.406 5.406 6 C 0.240 3.760 7 O -0.431 6.431 8 C 0.298 3.702 9 O -0.432 6.432 10 N -0.306 5.306 11 C 0.125 3.875 12 C -0.560 4.560 13 H 0.054 0.946 14 C -0.178 4.178 15 N -0.560 5.560 16 Si 0.779 3.221 17 H -0.193 1.193 18 H -0.201 1.201 19 H -0.207 1.207 20 C 0.024 3.976 21 C -0.209 4.209 22 C -0.206 4.206 23 C -0.185 4.185 24 N -0.176 5.176 25 H 0.334 0.666 26 O -0.001 6.001 27 H 0.121 0.879 28 H 0.150 0.850 29 H 0.148 0.852 30 H 0.236 0.764 31 H 0.031 0.969 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.117 0.883 39 H 0.131 0.869 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -15.675 6.834 3.725 17.501 hybrid contribution 0.907 -1.548 -0.886 2.001 sum -14.768 5.286 2.839 15.941 Atomic orbital electron populations 1.21047 0.77362 1.07275 1.07698 1.25187 0.97073 0.81661 0.91377 1.22059 0.85842 1.03242 1.15934 1.22412 0.97180 0.79712 0.86300 1.69992 0.94967 1.33270 1.42322 1.21096 0.90362 0.86389 0.78201 1.90566 1.88713 1.16495 1.47372 1.19733 0.85269 0.87055 0.78123 1.90565 1.87692 1.14207 1.50692 1.48231 1.05208 1.09353 1.67801 1.19561 0.97688 0.73126 0.97133 1.21397 1.50443 0.91875 0.92248 0.94595 1.25543 0.94787 0.96695 1.00736 1.70033 1.51363 1.02709 1.31909 0.85636 0.78603 0.77532 0.80283 1.19332 1.20113 1.20697 1.21080 0.85195 0.96112 0.95174 1.22582 1.04753 0.96904 0.96692 1.23001 1.01722 0.92838 1.03048 1.23041 0.89752 1.01624 1.04061 1.44638 0.97892 1.10734 1.64374 0.66555 1.83978 1.05300 1.33640 1.77187 0.87866 0.85022 0.85188 0.76450 0.96899 0.92829 0.92683 0.89766 0.91055 0.89474 0.89127 0.88300 0.86946 0.87446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.07 10.44 71.24 0.74 0.67 16 2 C 0.11 1.48 7.44 25.14 0.19 1.67 16 3 C -0.25 -5.02 11.08 22.46 0.25 -4.77 16 4 C 0.39 13.18 7.77 134.35 1.04 14.23 16 5 N -0.64 -28.22 10.34 -312.26 -3.23 -31.45 16 6 C 0.46 23.22 7.64 87.49 0.67 23.89 16 7 O -0.55 -29.12 9.79 -4.87 -0.05 -29.17 16 8 C 0.51 26.99 7.63 87.17 0.66 27.65 16 9 O -0.55 -29.41 16.54 -3.39 -0.06 -29.47 16 10 N -0.57 -29.11 2.49 -828.10 -2.06 -31.17 16 11 C 0.25 13.80 4.75 85.63 0.41 14.21 16 12 C -0.52 -31.08 8.35 25.60 0.21 -30.87 16 13 H 0.04 2.21 7.81 -2.91 -0.02 2.19 16 14 C 0.02 1.25 5.46 84.66 0.46 1.71 16 15 N -0.92 -55.34 13.29 21.45 0.28 -55.06 16 16 Si 0.95 46.00 29.54 68.60 2.03 48.03 16 17 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 18 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 19 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 20 C 0.15 6.21 5.64 86.38 0.49 6.70 16 21 C -0.19 -6.85 5.98 -10.79 -0.06 -6.91 16 22 C -0.17 -5.17 10.18 30.59 0.31 -4.86 16 23 C -0.15 -3.95 10.25 30.60 0.31 -3.63 16 24 N -0.51 -15.84 6.47 -55.51 -0.36 -16.20 16 25 H 0.47 17.43 6.28 -92.71 -0.58 16.85 16 26 O 0.01 0.26 11.14 77.22 0.86 1.12 16 27 H 0.10 -0.08 8.14 -2.38 -0.02 -0.10 16 28 H 0.13 -0.40 8.14 -2.39 -0.02 -0.42 16 29 H 0.13 -0.35 8.14 -2.39 -0.02 -0.37 16 30 H 0.22 3.08 8.06 -2.91 -0.02 3.06 16 31 H 0.01 0.75 8.02 -2.39 -0.02 0.73 16 32 H 0.05 3.28 5.37 -2.47 -0.01 3.26 16 33 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 34 H 0.08 3.47 8.03 -2.39 -0.02 3.45 16 35 H 0.07 3.00 7.25 -2.39 -0.02 2.98 16 36 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 37 H 0.09 2.87 8.03 -2.39 -0.02 2.85 16 38 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 39 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 40 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -84.12 347.66 3.60 -80.52 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: 0.50 Total: 23.18 kcal Atomic # 6 Polarization: 33.98 SS G_CDS: 5.69 Total: 39.67 kcal Atomic # 7 Polarization: -128.51 SS G_CDS: -5.36 Total: -133.88 kcal Atomic # 8 Polarization: -58.27 SS G_CDS: 0.76 Total: -57.52 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -84.12 3.60 -80.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349403273.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.175 kcal (2) G-P(sol) polarization free energy of solvation -84.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds