Wall clock time and date at job start Fri Apr 10 2020 17:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42909 * 113.99906 * 2 1 4 4 C 1.53000 * 109.47043 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47151 * 174.99420 * 4 3 2 6 6 N 1.46496 * 109.47372 * 294.99877 * 4 3 2 7 7 C 1.34768 * 119.99919 * 205.00167 * 6 4 3 8 8 O 1.21546 * 120.00742 * 359.97438 * 7 6 4 9 9 C 1.47892 * 119.99725 * 180.02562 * 7 6 4 10 10 C 1.39917 * 120.02519 * 359.72154 * 9 7 6 11 11 C 1.38338 * 120.35584 * 179.71916 * 10 9 7 12 12 C 1.37744 * 120.41110 * 0.56070 * 11 10 9 13 13 C 1.40745 * 120.04200 * 359.72077 * 12 11 10 14 14 C 1.41437 * 120.18148 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99786 * 24.43533 * 14 13 12 16 16 C 1.39939 * 120.00545 * 204.43097 * 14 13 12 17 17 N 1.30825 * 119.99636 * 17.89631 * 16 14 13 18 18 Si 1.86794 * 120.00431 * 197.89023 * 16 14 13 19 19 H 1.48505 * 109.47236 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47109 * 119.99987 * 18 16 14 21 21 H 1.48504 * 109.47142 * 240.00298 * 18 16 14 22 22 C 1.38992 * 120.02518 * 180.02562 * 9 7 6 23 23 C 1.50710 * 109.46994 * 54.99821 * 4 3 2 24 24 O 1.20824 * 119.99640 * 239.99872 * 23 4 3 25 25 O 1.34226 * 119.99828 * 59.99895 * 23 4 3 26 26 C 1.45202 * 116.99948 * 179.97438 * 25 23 4 27 27 H 1.08992 * 109.46489 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47005 * 300.00225 * 1 2 3 29 29 H 1.09000 * 109.46760 * 60.00036 * 1 2 3 30 30 H 1.08993 * 109.47020 * 59.99524 * 3 2 1 31 31 H 1.09006 * 109.46703 * 299.99659 * 3 2 1 32 32 H 0.97007 * 119.99407 * 24.99909 * 6 4 3 33 33 H 1.07998 * 119.82365 * 359.97438 * 10 9 7 34 34 H 1.08003 * 119.79069 * 180.26069 * 11 10 9 35 35 H 1.08004 * 119.97872 * 179.74614 * 12 11 10 36 36 H 0.97000 * 120.00384 * 179.97438 * 17 16 14 37 37 H 1.08003 * 120.20454 * 359.97438 * 22 9 7 38 38 H 1.08996 * 109.46875 * 300.00009 * 26 25 23 39 39 H 1.09000 * 109.46881 * 60.00140 * 26 25 23 40 40 H 1.09002 * 109.47125 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3056 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.9786 2.1766 -0.0890 6 7 3.9758 0.5646 1.2527 7 6 5.2195 0.7948 1.7178 8 8 5.9762 1.5166 1.0983 9 6 5.6641 0.1682 2.9815 10 6 4.7920 -0.6590 3.6976 11 6 5.2026 -1.2532 4.8774 12 6 6.4704 -1.0285 5.3668 13 6 7.3598 -0.1947 4.6634 14 6 8.6624 0.0376 5.1630 15 1 9.1238 -0.6819 5.8233 16 6 9.3535 1.1996 4.8017 17 7 8.7024 2.2208 4.3073 18 14 11.2057 1.2925 5.0257 19 1 11.6998 0.0147 5.5988 20 1 11.8523 1.5270 3.7096 21 1 11.5375 2.4095 5.9463 22 6 6.9466 0.4057 3.4620 23 6 3.9724 0.3324 -1.1629 24 8 4.5883 -0.6883 -0.9664 25 8 3.6773 0.7072 -2.4176 26 6 4.1301 -0.1619 -3.4890 27 1 -0.3632 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8464 -0.8901 32 1 3.3720 -0.0118 1.7470 33 1 3.7941 -0.8378 3.3251 34 1 4.5233 -1.8934 5.4206 35 1 6.7824 -1.4927 6.2908 36 1 9.1813 3.0265 4.0572 37 1 7.6217 1.0471 2.9149 38 1 5.2165 -0.2439 -3.4557 39 1 3.6872 -1.1503 -3.3668 40 1 3.8262 0.2559 -4.4488 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351781030.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:56:04 Heat of formation + Delta-G solvation = -143.391212 kcal Electronic energy + Delta-G solvation = -25196.563547 eV Core-core repulsion = 21362.674390 eV Total energy + Delta-G solvation = -3833.889157 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.63057 -39.10412 -38.10008 -37.02120 -36.27646 -34.45768 -33.69523 -31.04139 -29.54408 -29.32529 -27.79827 -26.55813 -25.28463 -24.13363 -22.69416 -21.00108 -20.51288 -19.67707 -17.95059 -17.70692 -17.10670 -16.59664 -16.38353 -16.10396 -15.72153 -15.29850 -15.15481 -14.72782 -14.34043 -14.08095 -13.70261 -13.34939 -13.19337 -12.99534 -12.73075 -12.52352 -12.47813 -12.08696 -11.89795 -11.63760 -11.60945 -11.14949 -11.05867 -10.73499 -10.72546 -10.49489 -10.45158 -10.03940 -9.98102 -9.66673 -9.20322 -9.11262 -8.90615 -7.61813 -7.49302 -6.78373 -4.38798 2.15610 2.37229 2.64836 2.83723 3.09772 3.14841 3.17391 3.38230 3.53593 3.88948 3.94399 4.53351 4.65164 4.76384 5.01533 5.07324 5.09010 5.15645 5.17068 5.22092 5.25726 5.43739 5.49805 5.63459 5.77644 6.11527 6.30883 6.41080 6.60864 6.73595 6.79392 7.00193 7.03262 7.23198 7.40168 7.70911 7.76018 7.88787 7.93644 8.05157 8.19976 8.52486 8.81218 8.84823 8.87981 10.16567 Molecular weight = 307.13amu Principal moments of inertia in cm(-1) A = 0.018175 B = 0.003710 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.183885 B = 7545.556233 C = 8451.575208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.389 6.389 3 C 0.059 3.941 4 C 0.164 3.836 5 H 0.138 0.862 6 N -0.712 5.712 7 C 0.573 3.427 8 O -0.543 6.543 9 C -0.125 4.125 10 C -0.214 4.214 11 C -0.098 4.098 12 C -0.210 4.210 13 C 0.098 3.902 14 C -0.460 4.460 15 H 0.082 0.918 16 C 0.073 3.927 17 N -0.784 5.784 18 Si 0.909 3.091 19 H -0.260 1.260 20 H -0.271 1.271 21 H -0.274 1.274 22 C -0.090 4.090 23 C 0.454 3.546 24 O -0.485 6.485 25 O -0.364 6.364 26 C 0.037 3.963 27 H 0.087 0.913 28 H 0.045 0.955 29 H 0.043 0.957 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.411 0.589 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.284 0.716 37 H 0.134 0.866 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.162 0.041 -10.152 17.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.308 6.308 3 C -0.019 4.019 4 C 0.056 3.944 5 H 0.155 0.845 6 N -0.368 5.368 7 C 0.364 3.636 8 O -0.420 6.420 9 C -0.129 4.129 10 C -0.234 4.234 11 C -0.116 4.116 12 C -0.230 4.230 13 C 0.096 3.904 14 C -0.489 4.489 15 H 0.100 0.900 16 C -0.146 4.146 17 N -0.408 5.408 18 Si 0.734 3.266 19 H -0.183 1.183 20 H -0.196 1.196 21 H -0.199 1.199 22 C -0.110 4.110 23 C 0.293 3.707 24 O -0.369 6.369 25 O -0.280 6.280 26 C -0.057 4.057 27 H 0.106 0.894 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.248 0.752 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.095 0.905 37 H 0.152 0.848 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.262 0.312 -10.637 17.004 hybrid contribution 0.346 -0.139 0.124 0.393 sum -12.916 0.173 -10.513 16.655 Atomic orbital electron populations 1.22764 0.80295 1.03071 1.00193 1.87948 1.20376 1.26972 1.95508 1.22794 0.90157 0.86068 1.02852 1.20442 0.93927 0.97710 0.82348 0.84491 1.45710 1.16601 1.52601 1.21842 1.18930 0.79896 0.79393 0.85332 1.90694 1.53233 1.38246 1.59856 1.19356 0.96929 1.02287 0.94288 1.20356 0.98235 1.05618 0.99179 1.20431 0.96019 0.99297 0.95844 1.21106 0.94098 1.07236 1.00580 1.17592 0.92690 0.90076 0.90070 1.19618 0.98951 1.04313 1.25983 0.90027 1.25960 1.00942 0.94797 0.92857 1.69795 1.37966 1.02893 1.30190 0.86241 0.82152 0.79304 0.78949 1.18334 1.19577 1.19925 1.21636 0.93770 1.00195 0.95430 1.24211 0.76774 0.85655 0.84057 1.90685 1.36232 1.24749 1.85261 1.86452 1.73325 1.52265 1.15977 1.23201 1.00538 0.94260 0.87664 0.89440 0.93630 0.93868 0.90606 0.90380 0.75155 0.89121 0.88831 0.88579 0.90532 0.84813 0.91972 0.92068 0.88357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.37 16 2 O -0.39 -4.51 9.91 -35.23 -0.35 -4.86 16 3 C 0.06 0.61 5.61 37.16 0.21 0.82 16 4 C 0.16 2.41 2.89 -69.08 -0.20 2.21 16 5 H 0.14 1.94 7.58 -51.93 -0.39 1.55 16 6 N -0.71 -12.60 4.54 -55.86 -0.25 -12.85 16 7 C 0.57 12.99 7.60 -12.31 -0.09 12.89 16 8 O -0.54 -13.80 16.00 5.32 0.09 -13.72 16 9 C -0.13 -3.06 5.87 -105.04 -0.62 -3.68 16 10 C -0.21 -4.66 9.55 -38.92 -0.37 -5.03 16 11 C -0.10 -2.13 10.01 -39.73 -0.40 -2.53 16 12 C -0.21 -5.08 9.78 -38.82 -0.38 -5.46 16 13 C 0.10 2.64 5.57 -106.87 -0.60 2.05 16 14 C -0.46 -12.25 9.05 -37.73 -0.34 -12.59 16 15 H 0.08 2.07 7.91 -52.48 -0.42 1.65 16 16 C 0.07 1.88 5.14 -17.34 -0.09 1.79 16 17 N -0.78 -20.90 10.96 55.55 0.61 -20.29 16 18 Si 0.91 19.02 29.59 -169.99 -5.03 13.98 16 19 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 20 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 21 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 22 C -0.09 -2.46 8.24 -38.44 -0.32 -2.78 16 23 C 0.45 7.55 6.81 36.01 0.25 7.80 16 24 O -0.48 -9.92 16.07 -18.75 -0.30 -10.22 16 25 O -0.36 -4.99 10.49 -39.25 -0.41 -5.40 16 26 C 0.04 0.41 10.56 101.05 1.07 1.47 16 27 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.41 6.64 6.40 -40.82 -0.26 6.38 16 33 H 0.09 1.67 6.38 -52.49 -0.33 1.33 16 34 H 0.09 1.73 8.06 -52.48 -0.42 1.31 16 35 H 0.10 2.15 8.06 -52.48 -0.42 1.73 16 36 H 0.28 6.91 8.30 -40.82 -0.34 6.58 16 37 H 0.13 3.94 5.74 -52.48 -0.30 3.63 16 38 H 0.06 0.73 8.13 -51.93 -0.42 0.30 16 39 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 40 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 350.10 15.07 5.28 5.28 Total: -1.00 -33.55 350.10 -6.21 -39.76 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -5.07 Total: 9.99 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -0.77 Total: -1.68 kcal Atomic # 7 Polarization: -33.50 SS G_CDS: 0.35 Total: -33.14 kcal Atomic # 8 Polarization: -33.22 SS G_CDS: -0.98 Total: -34.20 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.55 -6.21 -39.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351781030.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.630 kcal (2) G-P(sol) polarization free energy of solvation -33.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds