Wall clock time and date at job start Fri Apr 10 2020 17:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42909 * 113.99906 * 2 1 4 4 C 1.53000 * 109.47043 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47151 * 174.99420 * 4 3 2 6 6 N 1.46496 * 109.47372 * 294.99877 * 4 3 2 7 7 C 1.34768 * 119.99919 * 205.00167 * 6 4 3 8 8 O 1.21546 * 120.00742 * 359.97438 * 7 6 4 9 9 C 1.47892 * 119.99725 * 180.02562 * 7 6 4 10 10 C 1.39917 * 120.02519 * 359.72154 * 9 7 6 11 11 C 1.38338 * 120.35584 * 179.71916 * 10 9 7 12 12 C 1.37744 * 120.41110 * 0.56070 * 11 10 9 13 13 C 1.40745 * 120.04200 * 359.72077 * 12 11 10 14 14 C 1.41437 * 120.18148 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99786 * 24.43533 * 14 13 12 16 16 C 1.39939 * 120.00545 * 204.43097 * 14 13 12 17 17 N 1.30825 * 119.99636 * 17.89631 * 16 14 13 18 18 Si 1.86794 * 120.00431 * 197.89023 * 16 14 13 19 19 H 1.48505 * 109.47236 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47109 * 119.99987 * 18 16 14 21 21 H 1.48504 * 109.47142 * 240.00298 * 18 16 14 22 22 C 1.38992 * 120.02518 * 180.02562 * 9 7 6 23 23 C 1.50710 * 109.46994 * 54.99821 * 4 3 2 24 24 O 1.20824 * 119.99640 * 239.99872 * 23 4 3 25 25 O 1.34226 * 119.99828 * 59.99895 * 23 4 3 26 26 C 1.45202 * 116.99948 * 179.97438 * 25 23 4 27 27 H 1.08992 * 109.46489 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47005 * 300.00225 * 1 2 3 29 29 H 1.09000 * 109.46760 * 60.00036 * 1 2 3 30 30 H 1.08993 * 109.47020 * 59.99524 * 3 2 1 31 31 H 1.09006 * 109.46703 * 299.99659 * 3 2 1 32 32 H 0.97007 * 119.99407 * 24.99909 * 6 4 3 33 33 H 1.07998 * 119.82365 * 359.97438 * 10 9 7 34 34 H 1.08003 * 119.79069 * 180.26069 * 11 10 9 35 35 H 1.08004 * 119.97872 * 179.74614 * 12 11 10 36 36 H 0.97000 * 120.00384 * 179.97438 * 17 16 14 37 37 H 1.08003 * 120.20454 * 359.97438 * 22 9 7 38 38 H 1.08996 * 109.46875 * 300.00009 * 26 25 23 39 39 H 1.09000 * 109.46881 * 60.00140 * 26 25 23 40 40 H 1.09002 * 109.47125 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3056 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.9786 2.1766 -0.0890 6 7 3.9758 0.5646 1.2527 7 6 5.2195 0.7948 1.7178 8 8 5.9762 1.5166 1.0983 9 6 5.6641 0.1682 2.9815 10 6 4.7920 -0.6590 3.6976 11 6 5.2026 -1.2532 4.8774 12 6 6.4704 -1.0285 5.3668 13 6 7.3598 -0.1947 4.6634 14 6 8.6624 0.0376 5.1630 15 1 9.1238 -0.6819 5.8233 16 6 9.3535 1.1996 4.8017 17 7 8.7024 2.2208 4.3073 18 14 11.2057 1.2925 5.0257 19 1 11.6998 0.0147 5.5988 20 1 11.8523 1.5270 3.7096 21 1 11.5375 2.4095 5.9463 22 6 6.9466 0.4057 3.4620 23 6 3.9724 0.3324 -1.1629 24 8 4.5883 -0.6883 -0.9664 25 8 3.6773 0.7072 -2.4176 26 6 4.1301 -0.1619 -3.4890 27 1 -0.3632 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8464 -0.8901 32 1 3.3720 -0.0118 1.7470 33 1 3.7941 -0.8378 3.3251 34 1 4.5233 -1.8934 5.4206 35 1 6.7824 -1.4927 6.2908 36 1 9.1813 3.0265 4.0572 37 1 7.6217 1.0471 2.9149 38 1 5.2165 -0.2439 -3.4557 39 1 3.6872 -1.1503 -3.3668 40 1 3.8262 0.2559 -4.4488 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351781030.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:56:03 Heat of formation + Delta-G solvation = -166.525745 kcal Electronic energy + Delta-G solvation = -25197.566736 eV Core-core repulsion = 21362.674390 eV Total energy + Delta-G solvation = -3834.892345 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.130 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.94367 -40.71478 -39.11247 -38.69528 -37.58173 -35.93691 -35.53822 -32.62931 -31.33922 -30.92120 -28.69683 -27.40103 -27.08767 -25.19471 -24.34645 -22.83888 -21.85981 -21.35025 -19.64942 -18.95096 -18.44082 -17.89123 -17.71381 -17.31641 -16.92746 -16.60162 -16.45231 -16.36998 -15.72900 -15.66743 -15.09503 -15.05375 -14.54104 -14.43764 -14.29363 -14.09215 -13.49164 -13.29787 -13.07050 -12.96254 -12.90015 -12.79323 -12.56504 -12.30148 -12.18373 -11.93588 -11.85746 -11.80972 -11.51669 -11.08287 -10.94577 -10.67733 -10.43654 -9.50858 -9.40108 -8.67338 -6.38445 0.31781 0.99404 1.09894 1.36233 1.40870 1.48862 1.52641 2.05750 2.15848 2.19980 2.64522 2.78277 3.52738 3.68329 3.74611 3.92122 4.18469 4.26678 4.27388 4.38245 4.41456 4.43718 4.57791 4.58637 4.63474 4.65582 4.88658 4.93451 5.07724 5.12891 5.17709 5.26953 5.30936 5.50221 5.83821 5.90626 6.04005 6.10267 6.26163 6.41065 6.61283 6.63258 6.87168 6.93290 7.15496 8.29969 Molecular weight = 307.13amu Principal moments of inertia in cm(-1) A = 0.018175 B = 0.003710 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.183885 B = 7545.556233 C = 8451.575208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.418 6.418 3 C 0.067 3.933 4 C 0.155 3.845 5 H 0.141 0.859 6 N -0.693 5.693 7 C 0.570 3.430 8 O -0.581 6.581 9 C -0.139 4.139 10 C -0.197 4.197 11 C -0.094 4.094 12 C -0.215 4.215 13 C 0.068 3.932 14 C -0.497 4.497 15 H 0.084 0.916 16 C 0.030 3.970 17 N -0.823 5.823 18 Si 0.983 3.017 19 H -0.252 1.252 20 H -0.272 1.272 21 H -0.261 1.261 22 C -0.129 4.129 23 C 0.454 3.546 24 O -0.533 6.533 25 O -0.355 6.355 26 C 0.030 3.970 27 H 0.091 0.909 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.420 0.580 33 H 0.132 0.868 34 H 0.140 0.860 35 H 0.111 0.889 36 H 0.287 0.713 37 H 0.100 0.900 38 H 0.049 0.951 39 H 0.061 0.939 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.639 -0.413 -10.449 19.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.338 6.338 3 C -0.009 4.009 4 C 0.048 3.952 5 H 0.158 0.842 6 N -0.347 5.347 7 C 0.361 3.639 8 O -0.462 6.462 9 C -0.142 4.142 10 C -0.217 4.217 11 C -0.112 4.112 12 C -0.235 4.235 13 C 0.065 3.935 14 C -0.526 4.526 15 H 0.102 0.898 16 C -0.185 4.185 17 N -0.449 5.449 18 Si 0.803 3.197 19 H -0.175 1.175 20 H -0.197 1.197 21 H -0.186 1.186 22 C -0.150 4.150 23 C 0.296 3.704 24 O -0.421 6.421 25 O -0.271 6.271 26 C -0.063 4.063 27 H 0.110 0.890 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.116 0.884 31 H 0.125 0.875 32 H 0.259 0.741 33 H 0.150 0.850 34 H 0.158 0.842 35 H 0.129 0.871 36 H 0.098 0.902 37 H 0.118 0.882 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -15.818 -0.149 -10.949 19.238 hybrid contribution 0.880 -0.079 0.102 0.889 sum -14.938 -0.228 -10.847 18.462 Atomic orbital electron populations 1.22958 0.78245 1.03920 1.01640 1.87904 1.22584 1.27507 1.95825 1.22834 0.86499 0.86287 1.05328 1.20859 0.97249 0.96917 0.80218 0.84154 1.45464 1.14706 1.51793 1.22751 1.18784 0.81158 0.79061 0.84894 1.90664 1.54749 1.40036 1.60782 1.19694 0.96517 1.02604 0.95384 1.20833 0.99296 1.03190 0.98374 1.20917 0.95647 0.98930 0.95741 1.21423 0.94845 1.06348 1.00910 1.17940 0.93759 0.91258 0.90503 1.19894 0.99966 1.05272 1.27506 0.89758 1.26853 1.05622 0.93963 0.92088 1.69886 1.39856 1.03567 1.31566 0.85152 0.75893 0.79789 0.78860 1.17518 1.19681 1.18588 1.21440 0.95066 1.02094 0.96401 1.24557 0.75589 0.84978 0.85305 1.90667 1.38497 1.26936 1.86035 1.86442 1.72732 1.52459 1.15452 1.23532 0.99916 0.94555 0.88343 0.89007 0.92250 0.92327 0.88395 0.87537 0.74120 0.84987 0.84248 0.87136 0.90244 0.88236 0.93256 0.92035 0.84068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.42 -8.47 9.91 -148.98 -1.48 -9.95 16 3 C 0.07 1.19 5.61 71.98 0.40 1.59 16 4 C 0.15 4.35 2.89 44.25 0.13 4.48 16 5 H 0.14 3.89 7.58 -2.39 -0.02 3.87 16 6 N -0.69 -23.83 4.54 -448.94 -2.04 -25.87 16 7 C 0.57 26.31 7.60 86.80 0.66 26.97 16 8 O -0.58 -30.90 16.00 -3.86 -0.06 -30.96 16 9 C -0.14 -6.89 5.87 -20.13 -0.12 -7.01 16 10 C -0.20 -8.20 9.55 22.70 0.22 -7.98 16 11 C -0.09 -3.88 10.01 22.18 0.22 -3.66 16 12 C -0.22 -10.33 9.78 22.77 0.22 -10.10 16 13 C 0.07 3.77 5.57 -21.32 -0.12 3.65 16 14 C -0.50 -27.61 9.05 23.47 0.21 -27.40 16 15 H 0.08 4.42 7.91 -2.91 -0.02 4.40 16 16 C 0.03 1.58 5.14 85.25 0.44 2.02 16 17 N -0.82 -46.34 10.96 21.82 0.24 -46.10 16 18 Si 0.98 40.30 29.59 68.60 2.03 42.33 16 19 H -0.25 -9.88 7.11 99.48 0.71 -9.17 16 20 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 21 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 22 C -0.13 -7.43 8.24 23.01 0.19 -7.24 16 23 C 0.45 14.82 6.81 71.24 0.48 15.31 16 24 O -0.53 -22.01 16.07 21.97 0.35 -21.66 16 25 O -0.36 -9.21 10.49 -51.38 -0.54 -9.75 16 26 C 0.03 0.61 10.56 113.37 1.20 1.80 16 27 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.11 1.31 8.14 -2.38 -0.02 1.30 16 32 H 0.42 12.63 6.40 -92.70 -0.59 12.03 16 33 H 0.13 4.33 6.38 -2.91 -0.02 4.31 16 34 H 0.14 4.47 8.06 -2.91 -0.02 4.44 16 35 H 0.11 4.85 8.06 -2.91 -0.02 4.83 16 36 H 0.29 14.79 8.30 -92.71 -0.77 14.02 16 37 H 0.10 6.32 5.74 -2.91 -0.02 6.31 16 38 H 0.05 1.14 8.13 -2.39 -0.02 1.12 16 39 H 0.06 1.26 8.13 -2.39 -0.02 1.24 16 40 H 0.14 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -78.41 350.10 4.37 -74.04 By element: Atomic # 1 Polarization: 33.43 SS G_CDS: 0.48 Total: 33.91 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: 5.39 Total: -5.98 kcal Atomic # 7 Polarization: -70.18 SS G_CDS: -1.80 Total: -71.98 kcal Atomic # 8 Polarization: -70.59 SS G_CDS: -1.72 Total: -72.32 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.33 kcal Total: -78.41 4.37 -74.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351781030.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.483 kcal (2) G-P(sol) polarization free energy of solvation -78.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds