Wall clock time and date at job start Fri Apr 10 2020 17:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42900 * 114.00378 * 2 1 4 4 C 1.53003 * 109.47314 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.46730 * 175.00120 * 4 3 2 6 6 N 1.46497 * 109.47219 * 295.00246 * 4 3 2 7 7 C 1.34777 * 120.00052 * 205.00019 * 6 4 3 8 8 O 1.21583 * 119.99700 * 359.97438 * 7 6 4 9 9 C 1.47640 * 119.99974 * 179.97438 * 7 6 4 10 10 C 1.40013 * 119.89497 * 359.72298 * 9 7 6 11 11 C 1.36318 * 120.10393 * 179.75935 * 10 9 7 12 12 C 1.40887 * 119.89185 * 0.51427 * 11 10 9 13 13 C 1.41113 * 120.10561 * 179.71616 * 12 11 10 14 14 H 1.07995 * 120.00137 * 204.65475 * 13 12 11 15 15 C 1.40229 * 119.99668 * 24.65320 * 13 12 11 16 16 N 1.30649 * 120.00245 * 17.86711 * 15 13 12 17 17 Si 1.86797 * 119.99866 * 197.86470 * 15 13 12 18 18 H 1.48498 * 109.47272 * 60.00485 * 17 15 13 19 19 H 1.48505 * 109.47049 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47145 * 300.00032 * 17 15 13 21 21 C 1.40891 * 119.79400 * 359.74126 * 12 11 10 22 22 C 1.36313 * 119.89080 * 359.97438 * 21 12 11 23 23 C 1.50700 * 109.46696 * 55.00353 * 4 3 2 24 24 O 1.20828 * 119.99728 * 239.99857 * 23 4 3 25 25 O 1.34224 * 120.00334 * 59.72588 * 23 4 3 26 26 C 1.45204 * 117.00175 * 179.97438 * 25 23 4 27 27 H 1.09007 * 109.46723 * 299.99858 * 1 2 3 28 28 H 1.08996 * 109.47299 * 59.99297 * 1 2 3 29 29 H 1.08998 * 109.47338 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46583 * 60.00496 * 3 2 1 31 31 H 1.09001 * 109.46945 * 300.00466 * 3 2 1 32 32 H 0.97001 * 119.99742 * 24.99774 * 6 4 3 33 33 H 1.08001 * 119.94866 * 0.02562 * 10 9 7 34 34 H 1.08005 * 120.05458 * 180.23557 * 11 10 9 35 35 H 0.96993 * 120.00370 * 179.97438 * 16 15 13 36 36 H 1.07996 * 120.05338 * 179.97438 * 21 12 11 37 37 H 1.07997 * 119.94775 * 179.97438 * 22 21 12 38 38 H 1.08994 * 109.47131 * 179.97438 * 26 25 23 39 39 H 1.08996 * 109.46812 * 300.00191 * 26 25 23 40 40 H 1.09005 * 109.46850 * 59.99782 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9784 2.1764 -0.0902 6 7 3.9767 0.5638 1.2508 7 6 5.2209 0.7937 1.7151 8 8 5.9773 1.5160 1.0950 9 6 5.6654 0.1686 2.9766 10 6 4.7905 -0.6581 3.6918 11 6 5.1981 -1.2414 4.8546 12 6 6.4983 -1.0026 5.3418 13 6 6.9228 -1.5993 6.5480 14 1 7.7125 -1.1438 7.1272 15 6 6.3194 -2.7836 6.9947 16 7 5.6320 -3.5205 6.1632 17 14 6.4983 -3.3078 8.7787 18 1 5.9281 -2.2594 9.6623 19 1 5.7731 -4.5856 8.9943 20 1 7.9365 -3.4956 9.0976 21 6 7.3732 -0.1656 4.6213 22 6 6.9586 0.4086 3.4566 23 6 3.9713 0.3327 -1.1649 24 8 4.5873 -0.6881 -0.9693 25 8 3.6704 0.7053 -2.4188 26 6 4.1227 -0.1632 -3.4911 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6887 1.8462 0.8901 31 1 1.6886 1.8464 -0.8900 32 1 3.3733 -0.0127 1.7453 33 1 3.7927 -0.8374 3.3196 34 1 4.5239 -1.8820 5.4037 35 1 5.2149 -4.3399 6.4720 36 1 8.3706 0.0206 4.9911 37 1 7.6283 1.0506 2.9037 38 1 3.8138 0.2525 -4.4501 39 1 5.2094 -0.2413 -3.4614 40 1 3.6838 -1.1532 -3.3663 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351789073.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:56:08 Heat of formation + Delta-G solvation = -147.454229 kcal Electronic energy + Delta-G solvation = -24977.896521 eV Core-core repulsion = 21143.831179 eV Total energy + Delta-G solvation = -3834.065342 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.130 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.57585 -39.01120 -38.06090 -37.09880 -36.24148 -34.36489 -33.85670 -31.00653 -29.57803 -29.37951 -27.77401 -26.62946 -25.74057 -23.98696 -22.20410 -21.01440 -20.50620 -19.71853 -17.80409 -17.51544 -17.24809 -16.77312 -16.53927 -16.20517 -15.68761 -15.46843 -15.22717 -14.60498 -14.01130 -13.98051 -13.74483 -13.32339 -13.19281 -12.94403 -12.75474 -12.54371 -12.11532 -12.04998 -11.91356 -11.83339 -11.56328 -11.33994 -11.24917 -10.98558 -10.70698 -10.63928 -10.42513 -10.05842 -9.94448 -9.53651 -9.32892 -9.06872 -8.82821 -7.69241 -7.52658 -7.01299 -4.58455 2.20205 2.41355 2.67407 2.94486 2.95734 2.99960 3.07152 3.43113 3.63766 3.75294 3.89884 4.57696 4.57810 4.80032 5.04696 5.10540 5.11457 5.18758 5.18986 5.26421 5.28712 5.48321 5.51708 5.60319 6.03215 6.09626 6.34293 6.44794 6.69967 6.79723 6.84539 6.84828 7.05536 7.15558 7.45547 7.65795 7.80086 7.88052 7.93298 8.08896 8.17008 8.41923 8.64924 8.77557 8.99491 9.90558 Molecular weight = 307.13amu Principal moments of inertia in cm(-1) A = 0.019712 B = 0.003276 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.111052 B = 8545.314314 C = 9178.597732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.388 6.388 3 C 0.058 3.942 4 C 0.166 3.834 5 H 0.136 0.864 6 N -0.717 5.717 7 C 0.579 3.421 8 O -0.573 6.573 9 C -0.282 4.282 10 C -0.059 4.059 11 C -0.178 4.178 12 C 0.130 3.870 13 C -0.443 4.443 14 H 0.085 0.915 15 C 0.074 3.926 16 N -0.770 5.770 17 Si 0.914 3.086 18 H -0.260 1.260 19 H -0.276 1.276 20 H -0.262 1.262 21 C -0.239 4.239 22 C -0.020 4.020 23 C 0.453 3.547 24 O -0.484 6.484 25 O -0.365 6.365 26 C 0.037 3.963 27 H 0.045 0.955 28 H 0.042 0.958 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.409 0.591 33 H 0.090 0.910 34 H 0.121 0.879 35 H 0.287 0.713 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.061 0.939 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.248 5.509 -10.111 16.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.307 6.307 3 C -0.019 4.019 4 C 0.058 3.942 5 H 0.153 0.847 6 N -0.371 5.371 7 C 0.376 3.624 8 O -0.455 6.455 9 C -0.286 4.286 10 C -0.078 4.078 11 C -0.198 4.198 12 C 0.126 3.874 13 C -0.470 4.470 14 H 0.103 0.897 15 C -0.147 4.147 16 N -0.393 5.393 17 Si 0.738 3.262 18 H -0.185 1.185 19 H -0.201 1.201 20 H -0.187 1.187 21 C -0.259 4.259 22 C -0.039 4.039 23 C 0.292 3.708 24 O -0.368 6.368 25 O -0.281 6.281 26 C -0.057 4.057 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.106 0.894 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.246 0.754 33 H 0.108 0.892 34 H 0.138 0.862 35 H 0.099 0.901 36 H 0.116 0.884 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.080 0.920 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.536 5.269 -10.533 15.803 hybrid contribution -0.353 -0.739 0.709 1.083 sum -10.889 4.530 -9.825 15.350 Atomic orbital electron populations 1.22764 0.80318 1.03110 1.00128 1.87955 1.20356 1.26934 1.95485 1.22795 0.90314 0.86095 1.02695 1.20397 0.93756 0.97577 0.82501 0.84701 1.45685 1.16776 1.52848 1.21806 1.18660 0.79580 0.79106 0.85086 1.90628 1.53652 1.40368 1.60842 1.18780 0.98043 1.12975 0.98850 1.20481 0.96529 0.95544 0.95289 1.20968 0.96814 1.04119 0.97856 1.17786 0.90552 0.88151 0.90863 1.19828 1.16610 1.05693 1.04874 0.89719 1.26109 0.92909 0.95838 0.99888 1.69742 1.22877 1.10573 1.36080 0.86256 0.79848 0.78494 0.81625 1.18477 1.20059 1.18674 1.20701 0.99272 1.08013 0.97876 1.20348 0.93563 0.95457 0.94540 1.24280 0.76809 0.85728 0.84020 1.90693 1.36223 1.24659 1.85230 1.86452 1.73217 1.52426 1.16050 1.23190 1.00481 0.94330 0.87665 0.93646 0.93913 0.89416 0.90707 0.90520 0.75369 0.89242 0.86169 0.90139 0.88350 0.88099 0.88408 0.92039 0.92071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.39 16 2 O -0.39 -4.74 9.91 -35.23 -0.35 -5.09 16 3 C 0.06 0.62 5.61 37.16 0.21 0.83 16 4 C 0.17 2.46 2.89 -69.08 -0.20 2.26 16 5 H 0.14 1.88 7.58 -51.93 -0.39 1.49 16 6 N -0.72 -12.81 4.54 -55.94 -0.25 -13.06 16 7 C 0.58 12.79 7.59 -12.42 -0.09 12.69 16 8 O -0.57 -13.83 15.98 5.29 0.08 -13.75 16 9 C -0.28 -6.67 5.89 -104.73 -0.62 -7.29 16 10 C -0.06 -1.36 9.47 -39.61 -0.38 -1.74 16 11 C -0.18 -4.46 8.64 -39.27 -0.34 -4.80 16 12 C 0.13 3.35 5.58 -106.80 -0.60 2.76 16 13 C -0.44 -11.12 9.04 -37.74 -0.34 -11.46 16 14 H 0.08 2.02 7.91 -52.49 -0.42 1.60 16 15 C 0.07 1.75 5.14 -17.31 -0.09 1.66 16 16 N -0.77 -18.75 10.95 55.56 0.61 -18.14 16 17 Si 0.91 17.40 29.60 -169.99 -5.03 12.37 16 18 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 19 H -0.28 -5.11 7.11 56.52 0.40 -4.70 16 20 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 21 C -0.24 -5.90 9.73 -39.27 -0.38 -6.28 16 22 C -0.02 -0.48 9.52 -39.61 -0.38 -0.86 16 23 C 0.45 7.63 6.81 36.01 0.25 7.88 16 24 O -0.48 -10.12 16.07 -18.75 -0.30 -10.42 16 25 O -0.36 -5.05 10.49 -39.24 -0.41 -5.46 16 26 C 0.04 0.41 10.56 101.05 1.07 1.48 16 27 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.41 6.89 6.38 -40.82 -0.26 6.63 16 33 H 0.09 1.78 6.37 -52.49 -0.33 1.44 16 34 H 0.12 3.03 6.16 -52.48 -0.32 2.71 16 35 H 0.29 6.31 8.29 -40.82 -0.34 5.98 16 36 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 37 H 0.10 2.35 7.63 -52.49 -0.40 1.95 16 38 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 LS Contribution 349.84 15.07 5.27 5.27 Total: -1.00 -32.35 349.84 -6.22 -38.57 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -5.07 Total: 11.18 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: -0.78 Total: -1.48 kcal Atomic # 7 Polarization: -31.56 SS G_CDS: 0.35 Total: -31.21 kcal Atomic # 8 Polarization: -33.73 SS G_CDS: -0.98 Total: -34.71 kcal Atomic # 14 Polarization: 17.40 SS G_CDS: -5.03 Total: 12.37 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.35 -6.22 -38.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351789073.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.881 kcal (2) G-P(sol) polarization free energy of solvation -32.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds