Wall clock time and date at job start Fri Apr 10 2020 17:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 114.00574 * 2 1 4 4 C 1.52997 * 109.47316 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47058 * 184.99645 * 4 3 2 6 6 N 1.46504 * 109.46751 * 64.99999 * 4 3 2 7 7 C 1.34782 * 119.99902 * 154.99545 * 6 4 3 8 8 O 1.21587 * 119.99706 * 0.02562 * 7 6 4 9 9 C 1.47635 * 119.99846 * 180.02562 * 7 6 4 10 10 C 1.40008 * 119.89670 * 359.72543 * 9 7 6 11 11 C 1.36330 * 120.10386 * 179.71730 * 10 9 7 12 12 C 1.40887 * 119.89111 * 0.58127 * 11 10 9 13 13 C 1.41109 * 120.09871 * 179.67180 * 12 11 10 14 14 H 1.08006 * 119.99515 * 204.64924 * 13 12 11 15 15 C 1.40219 * 120.00302 * 24.65829 * 13 12 11 16 16 N 1.30645 * 120.00172 * 17.85736 * 15 13 12 17 17 Si 1.86796 * 120.00058 * 197.86107 * 15 13 12 18 18 H 1.48508 * 109.47087 * 89.99665 * 17 15 13 19 19 H 1.48499 * 109.47587 * 209.99504 * 17 15 13 20 20 H 1.48498 * 109.47327 * 330.00193 * 17 15 13 21 21 C 1.40888 * 119.79155 * 359.69792 * 12 11 10 22 22 C 1.36311 * 119.89494 * 359.97438 * 21 12 11 23 23 C 1.50698 * 109.47577 * 305.00328 * 4 3 2 24 24 O 1.20825 * 120.00078 * 119.99656 * 23 4 3 25 25 O 1.34232 * 119.99526 * 300.00144 * 23 4 3 26 26 C 1.45196 * 116.99850 * 180.02562 * 25 23 4 27 27 H 1.08999 * 109.46708 * 300.00788 * 1 2 3 28 28 H 1.08999 * 109.46575 * 59.99779 * 1 2 3 29 29 H 1.08990 * 109.47616 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46712 * 59.99647 * 3 2 1 31 31 H 1.09002 * 109.47264 * 300.00296 * 3 2 1 32 32 H 0.97001 * 120.00116 * 335.00651 * 6 4 3 33 33 H 1.07994 * 119.94730 * 0.02562 * 10 9 7 34 34 H 1.08002 * 120.04923 * 180.25417 * 11 10 9 35 35 H 0.96998 * 120.00219 * 180.02562 * 16 15 13 36 36 H 1.08003 * 120.04785 * 179.97438 * 21 12 11 37 37 H 1.08002 * 119.94524 * 180.02562 * 22 21 12 38 38 H 1.09001 * 109.47591 * 179.97438 * 26 25 23 39 39 H 1.09001 * 109.46940 * 299.99584 * 26 25 23 40 40 H 1.09003 * 109.47729 * 59.99238 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5356 1.1845 0.0006 5 1 3.9786 2.1764 0.0902 6 7 3.9767 0.5637 -1.2509 7 6 5.2209 0.7937 -1.7153 8 8 5.9773 1.5159 -1.0952 9 6 5.6652 0.1686 -2.9768 10 6 4.7943 -0.6673 -3.6861 11 6 5.1982 -1.2421 -4.8544 12 6 6.4985 -1.0036 -5.3415 13 6 6.9235 -1.6019 -6.5468 14 1 7.9759 -1.7640 -6.7273 15 6 5.9795 -1.9857 -7.5100 16 7 4.7697 -1.4942 -7.4712 17 14 6.4518 -3.1998 -8.8487 18 1 6.1723 -4.5823 -8.3842 19 1 5.6598 -2.9195 -10.0732 20 1 7.8988 -3.0630 -9.1530 21 6 7.3732 -0.1664 -4.6212 22 6 6.9581 0.4093 -3.4574 23 6 3.9715 0.3325 1.1647 24 8 4.5875 -0.6883 0.9690 25 8 3.6755 0.7079 2.4190 26 6 4.1275 -0.1608 3.4911 27 1 -0.3633 0.5140 0.8899 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3634 -1.0275 0.0005 30 1 1.6887 1.8463 0.8900 31 1 1.6888 1.8464 -0.8900 32 1 3.3732 -0.0126 -1.7455 33 1 3.7993 -0.8530 -3.3096 34 1 4.5242 -1.8835 -5.4029 35 1 4.1166 -1.7599 -8.1373 36 1 8.3710 0.0189 -4.9906 37 1 7.6279 1.0515 -2.9048 38 1 3.8236 0.2578 4.4506 39 1 3.6846 -1.1493 3.3689 40 1 5.2139 -0.2430 3.4587 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351789074.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:56:10 Heat of formation + Delta-G solvation = -147.700996 kcal Electronic energy + Delta-G solvation = -24963.934256 eV Core-core repulsion = 21129.858213 eV Total energy + Delta-G solvation = -3834.076043 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.130 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.58700 -39.01671 -38.06145 -37.10271 -36.25581 -34.36799 -33.86114 -31.00989 -29.58125 -29.38213 -27.78503 -26.63160 -25.74397 -23.99129 -22.20966 -21.01928 -20.51359 -19.72179 -17.81310 -17.52015 -17.25621 -16.77977 -16.54218 -16.21569 -15.69182 -15.47289 -15.22839 -14.60321 -14.01494 -13.98755 -13.75133 -13.33154 -13.19689 -12.96058 -12.75440 -12.54229 -12.12714 -12.04960 -11.91487 -11.83311 -11.57631 -11.35239 -11.27091 -10.94697 -10.72284 -10.65420 -10.44040 -10.03474 -9.94440 -9.54160 -9.34001 -9.06899 -8.83608 -7.69590 -7.53056 -7.02389 -4.58889 2.19354 2.39863 2.66079 2.93799 2.97666 2.99406 3.06880 3.42918 3.63504 3.75267 3.89527 4.57251 4.57808 4.79840 5.04682 5.09280 5.11659 5.17520 5.18874 5.26577 5.28856 5.48169 5.50461 5.60144 6.02737 6.09437 6.33676 6.43279 6.69599 6.79398 6.84182 6.84518 7.05134 7.15099 7.45438 7.65377 7.79777 7.88077 7.91673 8.08508 8.16648 8.41795 8.64725 8.77165 8.99134 9.89591 Molecular weight = 307.13amu Principal moments of inertia in cm(-1) A = 0.020125 B = 0.003266 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.948411 B = 8570.078608 C = 9318.693402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.389 6.389 3 C 0.058 3.942 4 C 0.166 3.834 5 H 0.136 0.864 6 N -0.717 5.717 7 C 0.579 3.421 8 O -0.573 6.573 9 C -0.281 4.281 10 C -0.059 4.059 11 C -0.178 4.178 12 C 0.130 3.870 13 C -0.442 4.442 14 H 0.085 0.915 15 C 0.074 3.926 16 N -0.771 5.771 17 Si 0.914 3.086 18 H -0.264 1.264 19 H -0.275 1.275 20 H -0.259 1.259 21 C -0.239 4.239 22 C -0.020 4.020 23 C 0.453 3.547 24 O -0.485 6.485 25 O -0.365 6.365 26 C 0.037 3.963 27 H 0.042 0.958 28 H 0.045 0.955 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.409 0.591 33 H 0.090 0.910 34 H 0.121 0.879 35 H 0.286 0.714 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.060 0.940 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.144 2.960 11.810 15.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.308 6.308 3 C -0.019 4.019 4 C 0.058 3.942 5 H 0.153 0.847 6 N -0.371 5.371 7 C 0.376 3.624 8 O -0.455 6.455 9 C -0.286 4.286 10 C -0.079 4.079 11 C -0.197 4.197 12 C 0.126 3.874 13 C -0.470 4.470 14 H 0.103 0.897 15 C -0.147 4.147 16 N -0.394 5.394 17 Si 0.738 3.262 18 H -0.189 1.189 19 H -0.200 1.200 20 H -0.183 1.183 21 C -0.258 4.258 22 C -0.039 4.039 23 C 0.293 3.707 24 O -0.369 6.369 25 O -0.281 6.281 26 C -0.057 4.057 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.106 0.894 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.246 0.754 33 H 0.108 0.892 34 H 0.138 0.862 35 H 0.098 0.902 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.079 0.921 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.531 2.973 12.070 15.664 hybrid contribution -0.346 -0.792 -0.674 1.096 sum -9.877 2.182 11.396 15.238 Atomic orbital electron populations 1.22764 0.80302 1.03094 1.00162 1.87948 1.20372 1.26958 1.95495 1.22796 0.90298 0.86088 1.02736 1.20401 0.93778 0.97587 0.82478 0.84682 1.45687 1.16765 1.52857 1.21801 1.18660 0.79591 0.79078 0.85104 1.90630 1.53700 1.40296 1.60856 1.18783 0.97773 1.13239 0.98794 1.20484 0.96378 0.95966 0.95026 1.20973 0.98263 1.04450 0.96027 1.17794 0.91363 0.86984 0.91232 1.19866 0.94987 1.32307 0.99796 0.89676 1.26098 0.94282 0.95046 0.99267 1.69743 1.04579 1.33080 1.32023 0.86202 0.80183 0.80731 0.79114 1.18925 1.20033 1.18283 1.20709 1.00675 1.05348 0.99096 1.20350 0.93562 0.95768 0.94247 1.24282 0.76747 0.85692 0.84016 1.90681 1.36266 1.24733 1.85257 1.86457 1.73369 1.52263 1.16024 1.23189 1.00473 0.94314 0.87690 0.93914 0.93607 0.89430 0.90517 0.90662 0.75360 0.89236 0.86156 0.90244 0.88339 0.88084 0.88401 0.92080 0.92049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.39 16 2 O -0.39 -4.73 9.91 -35.23 -0.35 -5.08 16 3 C 0.06 0.62 5.61 37.16 0.21 0.83 16 4 C 0.17 2.45 2.89 -69.08 -0.20 2.25 16 5 H 0.14 1.90 7.58 -51.93 -0.39 1.50 16 6 N -0.72 -12.80 4.54 -55.94 -0.25 -13.05 16 7 C 0.58 12.78 7.59 -12.42 -0.09 12.68 16 8 O -0.57 -13.82 15.99 5.29 0.08 -13.73 16 9 C -0.28 -6.65 5.89 -104.73 -0.62 -7.27 16 10 C -0.06 -1.36 9.47 -39.61 -0.38 -1.74 16 11 C -0.18 -4.45 8.64 -39.27 -0.34 -4.78 16 12 C 0.13 3.35 5.58 -106.80 -0.60 2.75 16 13 C -0.44 -11.11 9.04 -37.75 -0.34 -11.45 16 14 H 0.09 2.05 7.91 -52.48 -0.42 1.63 16 15 C 0.07 1.74 5.14 -17.31 -0.09 1.66 16 16 N -0.77 -18.52 10.95 55.56 0.61 -17.91 16 17 Si 0.91 17.41 29.60 -169.99 -5.03 12.38 16 18 H -0.26 -5.01 7.11 56.52 0.40 -4.60 16 19 H -0.28 -5.11 7.11 56.52 0.40 -4.71 16 20 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 21 C -0.24 -5.88 9.73 -39.27 -0.38 -6.27 16 22 C -0.02 -0.49 9.52 -39.61 -0.38 -0.86 16 23 C 0.45 7.55 6.81 36.00 0.25 7.80 16 24 O -0.49 -9.95 16.07 -18.75 -0.30 -10.25 16 25 O -0.36 -4.99 10.49 -39.26 -0.41 -5.40 16 26 C 0.04 0.41 10.56 101.05 1.07 1.47 16 27 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.41 6.89 6.38 -40.82 -0.26 6.63 16 33 H 0.09 1.78 6.37 -52.49 -0.33 1.45 16 34 H 0.12 3.03 6.16 -52.49 -0.32 2.71 16 35 H 0.29 6.17 8.29 -40.82 -0.34 5.83 16 36 H 0.10 2.26 8.06 -52.48 -0.42 1.83 16 37 H 0.10 2.35 7.63 -52.49 -0.40 1.95 16 38 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 40 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 LS Contribution 349.84 15.07 5.27 5.27 Total: -1.00 -32.06 349.84 -6.22 -38.28 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -5.07 Total: 11.02 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -0.78 Total: -1.53 kcal Atomic # 7 Polarization: -31.32 SS G_CDS: 0.35 Total: -30.96 kcal Atomic # 8 Polarization: -33.48 SS G_CDS: -0.98 Total: -34.46 kcal Atomic # 14 Polarization: 17.41 SS G_CDS: -5.03 Total: 12.38 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.06 -6.22 -38.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351789074.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.417 kcal (2) G-P(sol) polarization free energy of solvation -32.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds