Wall clock time and date at job start Fri Apr 10 2020 17:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 114.00574 * 2 1 4 4 C 1.52997 * 109.47316 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47058 * 184.99645 * 4 3 2 6 6 N 1.46504 * 109.46751 * 64.99999 * 4 3 2 7 7 C 1.34782 * 119.99902 * 154.99545 * 6 4 3 8 8 O 1.21587 * 119.99706 * 0.02562 * 7 6 4 9 9 C 1.47635 * 119.99846 * 180.02562 * 7 6 4 10 10 C 1.40008 * 119.89670 * 359.72543 * 9 7 6 11 11 C 1.36330 * 120.10386 * 179.71730 * 10 9 7 12 12 C 1.40887 * 119.89111 * 0.58127 * 11 10 9 13 13 C 1.41109 * 120.09871 * 179.67180 * 12 11 10 14 14 H 1.08006 * 119.99515 * 204.64924 * 13 12 11 15 15 C 1.40219 * 120.00302 * 24.65829 * 13 12 11 16 16 N 1.30645 * 120.00172 * 17.85736 * 15 13 12 17 17 Si 1.86796 * 120.00058 * 197.86107 * 15 13 12 18 18 H 1.48508 * 109.47087 * 89.99665 * 17 15 13 19 19 H 1.48499 * 109.47587 * 209.99504 * 17 15 13 20 20 H 1.48498 * 109.47327 * 330.00193 * 17 15 13 21 21 C 1.40888 * 119.79155 * 359.69792 * 12 11 10 22 22 C 1.36311 * 119.89494 * 359.97438 * 21 12 11 23 23 C 1.50698 * 109.47577 * 305.00328 * 4 3 2 24 24 O 1.20825 * 120.00078 * 119.99656 * 23 4 3 25 25 O 1.34232 * 119.99526 * 300.00144 * 23 4 3 26 26 C 1.45196 * 116.99850 * 180.02562 * 25 23 4 27 27 H 1.08999 * 109.46708 * 300.00788 * 1 2 3 28 28 H 1.08999 * 109.46575 * 59.99779 * 1 2 3 29 29 H 1.08990 * 109.47616 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46712 * 59.99647 * 3 2 1 31 31 H 1.09002 * 109.47264 * 300.00296 * 3 2 1 32 32 H 0.97001 * 120.00116 * 335.00651 * 6 4 3 33 33 H 1.07994 * 119.94730 * 0.02562 * 10 9 7 34 34 H 1.08002 * 120.04923 * 180.25417 * 11 10 9 35 35 H 0.96998 * 120.00219 * 180.02562 * 16 15 13 36 36 H 1.08003 * 120.04785 * 179.97438 * 21 12 11 37 37 H 1.08002 * 119.94524 * 180.02562 * 22 21 12 38 38 H 1.09001 * 109.47591 * 179.97438 * 26 25 23 39 39 H 1.09001 * 109.46940 * 299.99584 * 26 25 23 40 40 H 1.09003 * 109.47729 * 59.99238 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5356 1.1845 0.0006 5 1 3.9786 2.1764 0.0902 6 7 3.9767 0.5637 -1.2509 7 6 5.2209 0.7937 -1.7153 8 8 5.9773 1.5159 -1.0952 9 6 5.6652 0.1686 -2.9768 10 6 4.7943 -0.6673 -3.6861 11 6 5.1982 -1.2421 -4.8544 12 6 6.4985 -1.0036 -5.3415 13 6 6.9235 -1.6019 -6.5468 14 1 7.9759 -1.7640 -6.7273 15 6 5.9795 -1.9857 -7.5100 16 7 4.7697 -1.4942 -7.4712 17 14 6.4518 -3.1998 -8.8487 18 1 6.1723 -4.5823 -8.3842 19 1 5.6598 -2.9195 -10.0732 20 1 7.8988 -3.0630 -9.1530 21 6 7.3732 -0.1664 -4.6212 22 6 6.9581 0.4093 -3.4574 23 6 3.9715 0.3325 1.1647 24 8 4.5875 -0.6883 0.9690 25 8 3.6755 0.7079 2.4190 26 6 4.1275 -0.1608 3.4911 27 1 -0.3633 0.5140 0.8899 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3634 -1.0275 0.0005 30 1 1.6887 1.8463 0.8900 31 1 1.6888 1.8464 -0.8900 32 1 3.3732 -0.0126 -1.7455 33 1 3.7993 -0.8530 -3.3096 34 1 4.5242 -1.8835 -5.4029 35 1 4.1166 -1.7599 -8.1373 36 1 8.3710 0.0189 -4.9906 37 1 7.6279 1.0515 -2.9048 38 1 3.8236 0.2578 4.4506 39 1 3.6846 -1.1493 3.3689 40 1 5.2139 -0.2430 3.4587 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351789074.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:56:09 Heat of formation + Delta-G solvation = -168.601591 kcal Electronic energy + Delta-G solvation = -24964.840574 eV Core-core repulsion = 21129.858213 eV Total energy + Delta-G solvation = -3834.982361 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.130 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.87924 -40.61113 -39.15114 -38.71994 -37.54656 -35.78196 -35.68322 -32.58255 -31.34081 -31.01915 -28.69196 -27.82791 -27.08315 -25.03652 -23.91002 -22.84002 -21.92444 -21.32279 -19.38027 -19.02565 -18.68444 -18.10709 -17.68284 -17.31039 -17.14036 -16.59616 -16.35376 -15.91454 -15.74722 -15.54924 -15.07168 -15.05522 -14.51079 -14.44427 -14.10350 -13.88880 -13.69670 -13.31452 -13.20999 -13.03954 -12.88388 -12.84848 -12.62370 -12.39046 -12.30443 -11.83553 -11.77519 -11.76443 -11.38282 -11.13352 -10.87256 -10.67018 -10.34311 -9.58883 -9.43603 -8.80025 -6.49229 0.39479 1.13233 1.14568 1.36596 1.41197 1.53103 1.53621 2.13066 2.17582 2.24965 2.66261 2.78825 3.56832 3.68012 3.77500 4.06748 4.26245 4.27968 4.29246 4.32576 4.43160 4.43450 4.44774 4.56857 4.62766 4.66312 4.91355 4.91606 5.02078 5.13411 5.23826 5.28488 5.32913 5.57506 5.79721 5.91708 5.98518 6.10608 6.21097 6.52169 6.55803 6.67050 6.75976 6.87563 7.30321 8.15332 Molecular weight = 307.13amu Principal moments of inertia in cm(-1) A = 0.020125 B = 0.003266 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.948411 B = 8570.078608 C = 9318.693402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.420 6.420 3 C 0.065 3.935 4 C 0.158 3.842 5 H 0.144 0.856 6 N -0.704 5.704 7 C 0.580 3.420 8 O -0.599 6.599 9 C -0.295 4.295 10 C -0.052 4.052 11 C -0.197 4.197 12 C 0.103 3.897 13 C -0.472 4.472 14 H 0.086 0.914 15 C 0.038 3.962 16 N -0.795 5.795 17 Si 0.989 3.011 18 H -0.260 1.260 19 H -0.263 1.263 20 H -0.257 1.257 21 C -0.253 4.253 22 C -0.030 4.030 23 C 0.454 3.546 24 O -0.534 6.534 25 O -0.356 6.356 26 C 0.030 3.970 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.090 0.910 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.414 0.586 33 H 0.119 0.881 34 H 0.115 0.885 35 H 0.298 0.702 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.141 0.859 39 H 0.058 0.942 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.950 3.033 12.169 17.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.340 6.340 3 C -0.011 4.011 4 C 0.050 3.950 5 H 0.162 0.838 6 N -0.357 5.357 7 C 0.375 3.625 8 O -0.483 6.483 9 C -0.300 4.300 10 C -0.071 4.071 11 C -0.217 4.217 12 C 0.100 3.900 13 C -0.499 4.499 14 H 0.104 0.896 15 C -0.182 4.182 16 N -0.418 5.418 17 Si 0.809 3.191 18 H -0.185 1.185 19 H -0.187 1.187 20 H -0.181 1.181 21 C -0.272 4.272 22 C -0.050 4.050 23 C 0.296 3.704 24 O -0.422 6.422 25 O -0.271 6.271 26 C -0.064 4.064 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.108 0.892 30 H 0.125 0.875 31 H 0.113 0.887 32 H 0.252 0.748 33 H 0.137 0.863 34 H 0.132 0.868 35 H 0.109 0.891 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.159 0.841 39 H 0.077 0.923 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.394 3.072 12.469 17.168 hybrid contribution 0.142 -0.770 -0.648 1.017 sum -11.251 2.302 11.821 16.481 Atomic orbital electron populations 1.22947 0.78351 1.03834 1.01618 1.87904 1.22519 1.27743 1.95812 1.22854 0.86980 0.86152 1.05160 1.20817 0.96861 0.96993 0.80318 0.83846 1.45503 1.15218 1.52195 1.22818 1.18439 0.80727 0.78781 0.84563 1.90605 1.54792 1.41476 1.61416 1.19090 0.97761 1.13360 0.99755 1.20699 0.97481 0.94794 0.94117 1.21003 0.98238 1.05450 0.96983 1.18139 0.92119 0.87692 0.92098 1.20138 0.95667 1.33613 1.00440 0.89589 1.26937 0.93907 0.96161 1.01157 1.69757 1.05478 1.33537 1.33069 0.85090 0.79898 0.77947 0.76210 1.18474 1.18737 1.18099 1.20857 1.01142 1.05697 0.99499 1.20502 0.94248 0.95927 0.94290 1.24618 0.75551 0.84995 0.85267 1.90665 1.38592 1.26905 1.86039 1.86445 1.72777 1.52430 1.15480 1.23521 0.99992 0.94480 0.88358 0.92117 0.92440 0.89185 0.87517 0.88683 0.74786 0.86342 0.86766 0.89095 0.87588 0.87805 0.84090 0.92298 0.93080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.42 -9.26 9.91 -148.98 -1.48 -10.74 16 3 C 0.07 1.21 5.61 71.98 0.40 1.62 16 4 C 0.16 4.42 2.89 44.24 0.13 4.55 16 5 H 0.14 3.81 7.58 -2.38 -0.02 3.79 16 6 N -0.70 -24.60 4.54 -449.15 -2.04 -26.63 16 7 C 0.58 25.62 7.59 86.72 0.66 26.28 16 8 O -0.60 -29.09 15.99 -3.99 -0.06 -29.15 16 9 C -0.30 -14.14 5.89 -19.94 -0.12 -14.26 16 10 C -0.05 -2.40 9.47 22.25 0.21 -2.19 16 11 C -0.20 -10.06 8.64 22.47 0.19 -9.86 16 12 C 0.10 5.45 5.58 -21.28 -0.12 5.34 16 13 C -0.47 -24.13 9.04 23.46 0.21 -23.92 16 14 H 0.09 4.22 7.91 -2.91 -0.02 4.20 16 15 C 0.04 1.76 5.14 85.35 0.44 2.20 16 16 N -0.80 -38.12 10.95 21.87 0.24 -37.88 16 17 Si 0.99 35.07 29.60 68.60 2.03 37.10 16 18 H -0.26 -9.02 7.11 99.48 0.71 -8.31 16 19 H -0.26 -8.76 7.11 99.48 0.71 -8.05 16 20 H -0.26 -8.99 7.11 99.48 0.71 -8.28 16 21 C -0.25 -12.84 9.73 22.47 0.22 -12.62 16 22 C -0.03 -1.52 9.52 22.25 0.21 -1.30 16 23 C 0.45 14.73 6.81 71.24 0.48 15.21 16 24 O -0.53 -22.02 16.07 21.97 0.35 -21.67 16 25 O -0.36 -9.09 10.49 -51.43 -0.54 -9.63 16 26 C 0.03 0.59 10.56 113.37 1.20 1.79 16 27 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.10 1.41 8.14 -2.39 -0.02 1.40 16 32 H 0.41 13.49 6.38 -92.71 -0.59 12.90 16 33 H 0.12 4.63 6.37 -2.91 -0.02 4.61 16 34 H 0.11 5.87 6.16 -2.91 -0.02 5.85 16 35 H 0.30 12.63 8.29 -92.71 -0.77 11.86 16 36 H 0.11 5.04 8.06 -2.91 -0.02 5.01 16 37 H 0.10 4.99 7.63 -2.91 -0.02 4.97 16 38 H 0.14 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.06 1.21 8.13 -2.39 -0.02 1.20 16 40 H 0.05 1.14 8.13 -2.39 -0.02 1.12 16 Total: -1.00 -70.94 349.84 4.36 -66.58 By element: Atomic # 1 Polarization: 37.06 SS G_CDS: 0.48 Total: 37.54 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: 5.37 Total: -5.53 kcal Atomic # 7 Polarization: -62.72 SS G_CDS: -1.80 Total: -64.52 kcal Atomic # 8 Polarization: -69.45 SS G_CDS: -1.73 Total: -71.18 kcal Atomic # 14 Polarization: 35.07 SS G_CDS: 2.03 Total: 37.10 kcal Total: -70.94 4.36 -66.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351789074.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.018 kcal (2) G-P(sol) polarization free energy of solvation -70.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds