Wall clock time and date at job start Fri Apr 10 2020 17:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.47275 * 2 1 4 4 N 1.46502 * 109.46933 * 180.02562 * 3 2 1 5 5 C 1.37096 * 119.99754 * 264.54281 * 4 3 2 6 6 H 1.07997 * 119.99688 * 146.02132 * 5 4 3 7 7 C 1.38952 * 119.99974 * 326.01154 * 5 4 3 8 8 N 1.31407 * 120.00248 * 337.81170 * 7 5 4 9 9 Si 1.86797 * 119.99668 * 157.80444 * 7 5 4 10 10 H 1.48500 * 109.47321 * 0.02562 * 9 7 5 11 11 H 1.48512 * 109.46814 * 120.00425 * 9 7 5 12 12 H 1.48494 * 109.47323 * 240.00010 * 9 7 5 13 13 C 1.34778 * 120.00036 * 84.53987 * 4 3 2 14 14 O 1.21297 * 119.99581 * 0.02562 * 13 4 3 15 15 C 1.50696 * 120.00070 * 179.97438 * 13 4 3 16 16 N 1.46494 * 109.47147 * 180.02562 * 15 13 4 17 17 C 1.34777 * 120.00171 * 180.02562 * 16 15 13 18 18 O 1.21562 * 119.99857 * 359.97438 * 17 16 15 19 19 C 1.47832 * 120.00243 * 180.02562 * 17 16 15 20 20 N 1.32857 * 119.78436 * 359.97438 * 19 17 16 21 21 C 1.31363 * 121.69912 * 180.02562 * 20 19 17 22 22 C 1.38775 * 121.06876 * 0.02562 * 21 20 19 23 23 C 1.38306 * 119.43914 * 359.97438 * 22 21 20 24 24 C 1.39337 * 118.43979 * 0.02562 * 23 22 21 25 25 O 1.35651 * 120.53706 * 179.97438 * 24 23 22 26 26 H 1.08995 * 109.47080 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46541 * 299.99858 * 1 2 3 28 28 H 1.08993 * 109.46799 * 59.99672 * 1 2 3 29 29 H 1.09000 * 109.46541 * 240.00142 * 2 1 3 30 30 H 1.09004 * 109.46927 * 120.00784 * 2 1 3 31 31 H 1.09004 * 109.46805 * 60.00290 * 3 2 1 32 32 H 1.09001 * 109.47056 * 300.00347 * 3 2 1 33 33 H 0.96998 * 120.00294 * 180.02562 * 8 7 5 34 34 H 1.09005 * 109.46858 * 60.00171 * 15 13 4 35 35 H 1.08999 * 109.47266 * 300.00549 * 15 13 4 36 36 H 0.97006 * 120.00122 * 0.02562 * 16 15 13 37 37 H 1.08009 * 119.47117 * 180.02562 * 21 20 19 38 38 H 1.07996 * 120.27772 * 179.97438 * 22 21 20 39 39 H 1.08000 * 120.77444 * 179.72255 * 23 22 21 40 40 H 0.96699 * 113.99979 * 90.00171 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1911 1.5551 1.1810 6 1 5.1328 1.0422 1.3098 7 6 3.6748 2.3293 2.2129 8 7 2.8039 3.2777 1.9505 9 14 4.2187 2.0218 3.9733 10 1 5.1993 0.9069 4.0009 11 1 4.8511 3.2503 4.5178 12 1 3.0386 1.6642 4.8007 13 6 4.1785 1.3315 -1.1628 14 8 3.5715 1.2322 -2.2083 15 6 5.6855 1.3320 -1.1635 16 7 6.1732 1.2012 -2.5387 17 6 7.4982 1.1778 -2.7845 18 8 8.2885 1.2656 -1.8650 19 6 7.9904 1.0464 -4.1722 20 7 7.1228 0.9512 -5.1739 21 6 7.5186 0.8327 -6.4209 22 6 8.8678 0.8013 -6.7442 23 6 9.8106 0.8970 -5.7368 24 6 9.3665 1.0220 -4.4221 25 8 10.2542 1.1185 -3.4009 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5140 0.8900 31 1 1.6768 1.9563 0.8901 32 1 1.6767 1.9563 -0.8900 33 1 2.4437 3.8183 2.6708 34 1 6.0494 0.4950 -0.5674 35 1 6.0487 2.2669 -0.7369 36 1 5.5426 1.1315 -3.2725 37 1 6.7820 0.7584 -7.2074 38 1 9.1788 0.7030 -7.7737 39 1 10.8662 0.8705 -5.9636 40 1 10.5120 2.0259 -3.1883 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352533757.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:56:12 Heat of formation + Delta-G solvation = -73.881423 kcal Electronic energy + Delta-G solvation = -24888.379460 eV Core-core repulsion = 21089.797225 eV Total energy + Delta-G solvation = -3798.582235 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.136 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.84046 -39.10196 -38.19781 -37.33810 -35.33391 -33.79691 -32.86000 -32.51375 -31.38725 -30.53275 -27.71559 -25.72853 -24.77086 -23.92455 -23.30305 -20.93647 -20.33785 -19.28224 -18.64212 -18.26816 -17.14328 -16.68554 -15.96867 -15.75032 -15.29045 -15.07410 -14.89331 -14.56120 -14.32451 -13.99273 -13.79617 -13.68674 -13.31557 -13.25447 -12.84351 -12.61370 -12.29154 -11.82112 -11.56234 -11.51401 -11.37841 -11.22220 -10.99809 -10.68536 -10.34113 -10.31893 -10.15251 -10.09781 -9.77315 -9.40442 -9.16398 -9.13008 -8.58113 -8.56672 -7.61797 -6.45693 -4.12823 0.46216 0.90340 2.85809 3.07991 3.20714 3.25191 3.32309 3.68521 3.77947 3.94822 4.07227 4.18022 4.55048 4.65602 4.73478 4.83236 4.92488 5.21050 5.30937 5.71122 5.73316 5.77095 5.80139 5.93268 6.15820 6.18796 6.23595 6.34015 6.47639 6.53015 6.66140 6.80536 6.81388 7.08129 7.32199 7.40989 7.44580 7.57740 7.81797 8.01369 8.29343 8.54415 8.98247 9.38996 9.81799 10.55344 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.017591 B = 0.003540 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.329415 B = 7906.997346 C = 9198.474285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.115 3.885 4 N -0.428 5.428 5 C -0.348 4.348 6 H 0.095 0.905 7 C 0.047 3.953 8 N -0.853 5.853 9 Si 0.914 3.086 10 H -0.265 1.265 11 H -0.280 1.280 12 H -0.278 1.278 13 C 0.457 3.543 14 O -0.604 6.604 15 C 0.118 3.882 16 N -0.690 5.690 17 C 0.562 3.438 18 O -0.527 6.527 19 C 0.058 3.942 20 N -0.437 5.437 21 C 0.088 3.912 22 C -0.138 4.138 23 C -0.115 4.115 24 C 0.118 3.882 25 O -0.470 6.470 26 H 0.045 0.955 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.109 0.891 32 H 0.053 0.947 33 H 0.271 0.729 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.418 0.582 37 H 0.166 0.834 38 H 0.143 0.857 39 H 0.146 0.854 40 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.609 -2.776 -12.213 15.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C -0.008 4.008 4 N -0.145 5.145 5 C -0.476 4.476 6 H 0.112 0.888 7 C -0.160 4.160 8 N -0.489 5.489 9 Si 0.740 3.260 10 H -0.189 1.189 11 H -0.206 1.206 12 H -0.204 1.204 13 C 0.245 3.755 14 O -0.491 6.491 15 C -0.009 4.009 16 N -0.344 5.344 17 C 0.345 3.655 18 O -0.403 6.403 19 C -0.081 4.081 20 N -0.150 5.150 21 C -0.073 4.073 22 C -0.158 4.158 23 C -0.141 4.141 24 C 0.069 3.931 25 O -0.280 6.280 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.126 0.874 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.105 0.895 35 H 0.113 0.887 36 H 0.257 0.743 37 H 0.183 0.817 38 H 0.161 0.839 39 H 0.164 0.836 40 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 7.794 -3.176 -11.627 14.353 hybrid contribution 0.886 0.361 0.396 1.035 sum 8.679 -2.814 -11.231 14.470 Atomic orbital electron populations 1.21650 0.96519 1.00470 1.01406 1.21838 0.94786 0.99346 1.01386 1.21493 0.80919 0.94669 1.03763 1.43429 1.05018 1.61294 1.04716 1.19564 1.07684 1.29835 0.90500 0.88775 1.25335 0.96739 0.93309 1.00593 1.69950 1.29771 1.15940 1.33267 0.86077 0.78846 0.78783 0.82284 1.18939 1.20595 1.20416 1.20197 0.88803 0.82259 0.84222 1.90521 1.69724 1.57238 1.31648 1.20961 0.93775 1.03944 0.82184 1.45702 1.06637 1.71374 1.10686 1.17634 0.82900 0.78348 0.86587 1.90813 1.55416 1.50117 1.43975 1.21856 0.90111 1.01881 0.94233 1.67674 1.38191 1.08928 1.00189 1.22878 0.94742 0.96413 0.93229 1.22313 0.93949 0.98977 1.00561 1.21979 1.01401 0.99306 0.91399 1.19401 0.88374 0.97411 0.87870 1.84762 1.60242 1.32775 1.50202 0.93604 0.92994 0.93106 0.92795 0.92338 0.87381 0.92863 0.91900 0.89548 0.88664 0.74301 0.81706 0.83944 0.83647 0.74397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.91 37.16 0.37 -2.03 16 2 C -0.13 -2.75 6.22 -26.73 -0.17 -2.92 16 3 C 0.11 2.71 4.90 -4.04 -0.02 2.69 16 4 N -0.43 -10.64 2.56 -114.81 -0.29 -10.94 16 5 C -0.35 -8.72 8.70 -14.93 -0.13 -8.85 16 6 H 0.09 2.28 6.97 -52.49 -0.37 1.91 16 7 C 0.05 1.16 4.92 -17.47 -0.09 1.08 16 8 N -0.85 -22.03 11.34 55.50 0.63 -21.40 16 9 Si 0.91 19.24 29.61 -169.99 -5.03 14.21 16 10 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 11 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 12 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 13 C 0.46 11.07 7.67 -10.99 -0.08 10.98 16 14 O -0.60 -15.46 15.34 5.54 0.09 -15.37 16 15 C 0.12 2.53 4.81 -5.20 -0.03 2.50 16 16 N -0.69 -13.60 5.52 -62.44 -0.34 -13.94 16 17 C 0.56 10.50 7.80 -12.34 -0.10 10.40 16 18 O -0.53 -10.83 15.14 -16.64 -0.25 -11.08 16 19 C 0.06 0.90 6.76 -82.88 -0.56 0.34 16 20 N -0.44 -6.23 9.54 -9.71 -0.09 -6.33 16 21 C 0.09 0.88 11.17 -17.55 -0.20 0.69 16 22 C -0.14 -1.09 10.10 -39.36 -0.40 -1.49 16 23 C -0.11 -1.05 10.12 -39.15 -0.40 -1.45 16 24 C 0.12 1.52 6.74 -38.56 -0.26 1.26 16 25 O -0.47 -6.06 11.58 -40.60 -0.47 -6.53 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.11 2.69 5.35 -51.93 -0.28 2.41 16 32 H 0.05 1.30 7.59 -51.93 -0.39 0.91 16 33 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 34 H 0.09 1.83 7.64 -51.93 -0.40 1.43 16 35 H 0.10 2.09 8.10 -51.93 -0.42 1.67 16 36 H 0.42 8.31 6.76 -40.82 -0.28 8.03 16 37 H 0.17 1.15 8.06 -52.48 -0.42 0.73 16 38 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 39 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.40 3.53 9.06 45.56 0.41 3.94 16 LS Contribution 346.44 15.07 5.22 5.22 Total: -1.00 -31.66 346.44 -6.84 -38.50 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -4.24 Total: 14.45 kcal Atomic # 6 Polarization: 15.27 SS G_CDS: -2.05 Total: 13.22 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: -0.10 Total: -52.61 kcal Atomic # 8 Polarization: -32.35 SS G_CDS: -0.64 Total: -32.99 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.03 Total: 14.21 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.66 -6.84 -38.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352533757.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.381 kcal (2) G-P(sol) polarization free energy of solvation -31.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds