Wall clock time and date at job start Fri Apr 10 2020 17:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.47275 * 2 1 4 4 N 1.46502 * 109.46933 * 180.02562 * 3 2 1 5 5 C 1.37096 * 119.99754 * 264.54281 * 4 3 2 6 6 H 1.07997 * 119.99688 * 146.02132 * 5 4 3 7 7 C 1.38952 * 119.99974 * 326.01154 * 5 4 3 8 8 N 1.31407 * 120.00248 * 337.81170 * 7 5 4 9 9 Si 1.86797 * 119.99668 * 157.80444 * 7 5 4 10 10 H 1.48500 * 109.47321 * 0.02562 * 9 7 5 11 11 H 1.48512 * 109.46814 * 120.00425 * 9 7 5 12 12 H 1.48494 * 109.47323 * 240.00010 * 9 7 5 13 13 C 1.34778 * 120.00036 * 84.53987 * 4 3 2 14 14 O 1.21297 * 119.99581 * 0.02562 * 13 4 3 15 15 C 1.50696 * 120.00070 * 179.97438 * 13 4 3 16 16 N 1.46494 * 109.47147 * 180.02562 * 15 13 4 17 17 C 1.34777 * 120.00171 * 180.02562 * 16 15 13 18 18 O 1.21562 * 119.99857 * 359.97438 * 17 16 15 19 19 C 1.47832 * 120.00243 * 180.02562 * 17 16 15 20 20 N 1.32857 * 119.78436 * 359.97438 * 19 17 16 21 21 C 1.31363 * 121.69912 * 180.02562 * 20 19 17 22 22 C 1.38775 * 121.06876 * 0.02562 * 21 20 19 23 23 C 1.38306 * 119.43914 * 359.97438 * 22 21 20 24 24 C 1.39337 * 118.43979 * 0.02562 * 23 22 21 25 25 O 1.35651 * 120.53706 * 179.97438 * 24 23 22 26 26 H 1.08995 * 109.47080 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46541 * 299.99858 * 1 2 3 28 28 H 1.08993 * 109.46799 * 59.99672 * 1 2 3 29 29 H 1.09000 * 109.46541 * 240.00142 * 2 1 3 30 30 H 1.09004 * 109.46927 * 120.00784 * 2 1 3 31 31 H 1.09004 * 109.46805 * 60.00290 * 3 2 1 32 32 H 1.09001 * 109.47056 * 300.00347 * 3 2 1 33 33 H 0.96998 * 120.00294 * 180.02562 * 8 7 5 34 34 H 1.09005 * 109.46858 * 60.00171 * 15 13 4 35 35 H 1.08999 * 109.47266 * 300.00549 * 15 13 4 36 36 H 0.97006 * 120.00122 * 0.02562 * 16 15 13 37 37 H 1.08009 * 119.47117 * 180.02562 * 21 20 19 38 38 H 1.07996 * 120.27772 * 179.97438 * 22 21 20 39 39 H 1.08000 * 120.77444 * 179.72255 * 23 22 21 40 40 H 0.96699 * 113.99979 * 90.00171 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1911 1.5551 1.1810 6 1 5.1328 1.0422 1.3098 7 6 3.6748 2.3293 2.2129 8 7 2.8039 3.2777 1.9505 9 14 4.2187 2.0218 3.9733 10 1 5.1993 0.9069 4.0009 11 1 4.8511 3.2503 4.5178 12 1 3.0386 1.6642 4.8007 13 6 4.1785 1.3315 -1.1628 14 8 3.5715 1.2322 -2.2083 15 6 5.6855 1.3320 -1.1635 16 7 6.1732 1.2012 -2.5387 17 6 7.4982 1.1778 -2.7845 18 8 8.2885 1.2656 -1.8650 19 6 7.9904 1.0464 -4.1722 20 7 7.1228 0.9512 -5.1739 21 6 7.5186 0.8327 -6.4209 22 6 8.8678 0.8013 -6.7442 23 6 9.8106 0.8970 -5.7368 24 6 9.3665 1.0220 -4.4221 25 8 10.2542 1.1185 -3.4009 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5140 0.8900 31 1 1.6768 1.9563 0.8901 32 1 1.6767 1.9563 -0.8900 33 1 2.4437 3.8183 2.6708 34 1 6.0494 0.4950 -0.5674 35 1 6.0487 2.2669 -0.7369 36 1 5.5426 1.1315 -3.2725 37 1 6.7820 0.7584 -7.2074 38 1 9.1788 0.7030 -7.7737 39 1 10.8662 0.8705 -5.9636 40 1 10.5120 2.0259 -3.1883 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352533757.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:56:12 Heat of formation + Delta-G solvation = -96.842297 kcal Electronic energy + Delta-G solvation = -24889.375118 eV Core-core repulsion = 21089.797225 eV Total energy + Delta-G solvation = -3799.577893 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.136 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.87417 -40.79289 -39.73555 -38.28183 -37.20161 -35.42905 -34.53692 -33.47565 -33.22804 -31.49239 -29.30744 -27.50676 -26.28176 -25.20468 -24.22200 -22.53267 -21.76364 -21.16779 -19.87787 -19.40104 -18.57943 -17.90324 -17.62269 -17.03100 -16.85121 -16.47099 -16.32777 -16.17846 -15.84792 -15.50401 -15.36346 -14.94156 -14.53421 -14.35139 -14.16186 -14.03410 -13.62565 -13.48723 -13.31927 -13.20302 -12.95461 -12.62827 -12.46134 -12.41378 -12.03321 -12.01047 -11.54620 -11.41996 -11.06987 -10.89733 -10.54986 -10.39952 -10.28121 -9.94225 -9.56958 -8.37276 -6.11340 -0.46701 0.12728 1.37735 1.48046 1.60631 1.66756 1.86097 1.93014 2.30707 2.70972 2.89233 3.00446 3.04951 3.21527 3.75863 3.89625 4.00432 4.05879 4.21221 4.31132 4.40656 4.46486 4.49873 4.54743 4.56430 4.77655 4.96390 4.98054 5.01629 5.08387 5.21035 5.21877 5.35242 5.42275 5.51155 5.55113 5.90588 6.33167 6.39912 6.63530 6.79614 7.02922 7.07618 7.45064 7.87517 8.64923 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.017591 B = 0.003540 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.329415 B = 7906.997346 C = 9198.474285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.126 4.126 3 C 0.115 3.885 4 N -0.437 5.437 5 C -0.367 4.367 6 H 0.098 0.902 7 C 0.011 3.989 8 N -0.883 5.883 9 Si 0.982 3.018 10 H -0.261 1.261 11 H -0.279 1.279 12 H -0.272 1.272 13 C 0.447 3.553 14 O -0.623 6.623 15 C 0.132 3.868 16 N -0.695 5.695 17 C 0.559 3.441 18 O -0.555 6.555 19 C 0.016 3.984 20 N -0.470 5.470 21 C 0.080 3.920 22 C -0.107 4.107 23 C -0.108 4.108 24 C 0.112 3.888 25 O -0.487 6.487 26 H 0.072 0.928 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.041 0.959 30 H 0.056 0.944 31 H 0.097 0.903 32 H 0.035 0.965 33 H 0.276 0.724 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.416 0.584 37 H 0.196 0.804 38 H 0.193 0.807 39 H 0.181 0.819 40 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.739 -3.581 -13.673 17.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.164 4.164 3 C -0.008 4.008 4 N -0.154 5.154 5 C -0.494 4.494 6 H 0.115 0.885 7 C -0.193 4.193 8 N -0.519 5.519 9 Si 0.805 3.195 10 H -0.184 1.184 11 H -0.205 1.205 12 H -0.197 1.197 13 C 0.236 3.764 14 O -0.512 6.512 15 C 0.005 3.995 16 N -0.348 5.348 17 C 0.345 3.655 18 O -0.434 6.434 19 C -0.120 4.120 20 N -0.183 5.183 21 C -0.081 4.081 22 C -0.127 4.127 23 C -0.133 4.133 24 C 0.063 3.937 25 O -0.300 6.300 26 H 0.091 0.909 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.115 0.885 32 H 0.053 0.947 33 H 0.086 0.914 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.255 0.745 37 H 0.213 0.787 38 H 0.210 0.790 39 H 0.198 0.802 40 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 8.930 -3.974 -13.084 16.332 hybrid contribution 0.573 0.650 0.675 1.098 sum 9.502 -3.324 -12.409 15.979 Atomic orbital electron populations 1.21605 0.93467 1.02398 1.01828 1.21736 0.97412 0.96700 1.00579 1.21499 0.80573 0.96560 1.02151 1.43676 1.05633 1.61052 1.04991 1.19832 1.08263 1.30495 0.90853 0.88487 1.26142 0.96584 0.92592 1.04024 1.70028 1.30687 1.16574 1.34617 0.85059 0.78584 0.78585 0.77280 1.18444 1.20455 1.19713 1.20611 0.89873 0.81993 0.83895 1.90485 1.70410 1.58143 1.32179 1.20670 0.91905 1.03303 0.83612 1.45688 1.07342 1.72271 1.09546 1.18264 0.81968 0.76900 0.88320 1.90766 1.55755 1.51381 1.45491 1.21408 0.91480 1.06498 0.92644 1.67555 1.38989 1.10184 1.01602 1.23551 0.96958 0.95348 0.92245 1.22849 0.92452 0.94821 1.02551 1.22359 1.03494 0.97901 0.89592 1.19651 0.87280 0.97374 0.89379 1.84706 1.60107 1.34173 1.50964 0.90902 0.92470 0.92809 0.94030 0.92555 0.88525 0.94663 0.91445 0.89596 0.89694 0.74484 0.78722 0.78984 0.80194 0.72879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.39 9.91 71.98 0.71 -3.68 16 2 C -0.13 -5.17 6.22 30.60 0.19 -4.98 16 3 C 0.12 5.62 4.90 86.38 0.42 6.04 16 4 N -0.44 -22.52 2.56 -635.53 -1.63 -24.14 16 5 C -0.37 -18.80 8.70 84.04 0.73 -18.07 16 6 H 0.10 4.81 6.97 -2.91 -0.02 4.79 16 7 C 0.01 0.55 4.92 84.93 0.42 0.96 16 8 N -0.88 -46.20 11.34 21.66 0.25 -45.96 16 9 Si 0.98 39.40 29.61 68.60 2.03 41.43 16 10 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 11 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 12 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 13 C 0.45 22.64 7.67 87.66 0.67 23.31 16 14 O -0.62 -33.25 15.34 -3.08 -0.05 -33.30 16 15 C 0.13 5.98 4.81 85.63 0.41 6.39 16 16 N -0.70 -28.89 5.52 -469.73 -2.59 -31.49 16 17 C 0.56 21.93 7.80 86.78 0.68 22.61 16 18 O -0.56 -23.93 15.14 17.08 0.26 -23.67 16 19 C 0.02 0.50 6.76 41.93 0.28 0.79 16 20 N -0.47 -13.26 9.54 -184.62 -1.76 -15.02 16 21 C 0.08 1.40 11.17 84.89 0.95 2.35 16 22 C -0.11 -1.20 10.10 22.41 0.23 -0.97 16 23 C -0.11 -1.59 10.12 22.55 0.23 -1.36 16 24 C 0.11 2.78 6.74 22.93 0.15 2.94 16 25 O -0.49 -12.49 11.58 -68.67 -0.80 -13.29 16 26 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.10 4.94 5.35 -2.39 -0.01 4.93 16 32 H 0.03 1.80 7.59 -2.39 -0.02 1.78 16 33 H 0.28 13.44 8.31 -92.71 -0.77 12.67 16 34 H 0.09 3.84 7.64 -2.38 -0.02 3.82 16 35 H 0.09 3.97 8.10 -2.39 -0.02 3.95 16 36 H 0.42 17.48 6.76 -92.70 -0.63 16.85 16 37 H 0.20 2.03 8.06 -2.91 -0.02 2.01 16 38 H 0.19 0.31 8.06 -2.91 -0.02 0.29 16 39 H 0.18 1.41 8.06 -2.91 -0.02 1.39 16 40 H 0.41 7.36 9.06 -74.06 -0.67 6.69 16 Total: -1.00 -71.82 346.44 1.59 -70.23 By element: Atomic # 1 Polarization: 39.08 SS G_CDS: -0.20 Total: 38.88 kcal Atomic # 6 Polarization: 30.24 SS G_CDS: 6.08 Total: 36.31 kcal Atomic # 7 Polarization: -110.87 SS G_CDS: -5.73 Total: -116.60 kcal Atomic # 8 Polarization: -69.67 SS G_CDS: -0.58 Total: -70.26 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 2.03 Total: 41.43 kcal Total: -71.82 1.59 -70.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352533757.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.611 kcal (2) G-P(sol) polarization free energy of solvation -71.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds