Wall clock time and date at job start Fri Apr 10 2020 17:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35983 * 117.00165 * 2 1 4 4 C 1.38693 * 120.00106 * 179.97438 * 3 2 1 5 5 C 1.38132 * 120.00051 * 180.02562 * 4 3 2 6 6 C 1.38694 * 119.99985 * 359.97438 * 5 4 3 7 7 O 1.35985 * 120.00176 * 179.97438 * 6 5 4 8 8 C 1.42898 * 116.99800 * 180.02562 * 7 6 5 9 9 C 1.50707 * 109.46781 * 180.02562 * 8 7 6 10 10 O 1.21279 * 119.99658 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00011 * 179.97438 * 9 8 7 12 12 C 1.47584 * 134.49657 * 179.97438 * 11 9 8 13 13 C 1.53946 * 86.12025 * 155.36378 * 12 11 9 14 14 O 1.42897 * 113.74068 * 269.15867 * 13 12 11 15 15 C 1.50700 * 113.74246 * 137.95222 * 13 12 11 16 16 H 1.07998 * 119.99659 * 4.91778 * 15 13 12 17 17 C 1.37870 * 120.00275 * 184.91298 * 15 13 12 18 18 N 1.31521 * 119.99939 * 13.83955 * 17 15 13 19 19 Si 1.86793 * 120.00241 * 193.83635 * 17 15 13 20 20 H 1.48503 * 109.47305 * 180.02562 * 19 17 15 21 21 H 1.48502 * 109.47166 * 299.99995 * 19 17 15 22 22 H 1.48499 * 109.46987 * 59.99962 * 19 17 15 23 23 C 1.47585 * 134.49296 * 0.02562 * 11 9 8 24 24 C 1.38702 * 119.99958 * 0.26238 * 6 5 4 25 25 C 1.38130 * 119.99932 * 359.48847 * 24 6 5 26 26 H 1.08995 * 109.47342 * 60.00113 * 1 2 3 27 27 H 1.09006 * 109.47041 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47313 * 299.99535 * 1 2 3 29 29 H 1.08007 * 120.00348 * 0.02562 * 4 3 2 30 30 H 1.07998 * 119.99960 * 179.97438 * 5 4 3 31 31 H 1.08992 * 109.47571 * 60.00448 * 8 7 6 32 32 H 1.08994 * 109.47426 * 299.99769 * 8 7 6 33 33 H 1.09003 * 113.76727 * 41.05948 * 12 11 9 34 34 H 1.09000 * 113.86995 * 269.68290 * 12 11 9 35 35 H 0.96698 * 114.00098 * 171.44601 * 14 13 12 36 36 H 0.97007 * 119.99483 * 5.87247 * 18 17 15 37 37 H 1.08994 * 113.77423 * 90.33340 * 23 11 9 38 38 H 1.09010 * 113.76672 * 318.93187 * 23 11 9 39 39 H 1.07998 * 120.00206 * 179.71919 * 24 6 5 40 40 H 1.08001 * 120.00460 * 180.22954 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 3.4314 1.2842 0.0005 5 6 4.0585 2.5149 0.0011 6 6 3.3031 3.6781 0.0005 7 8 3.9205 4.8898 0.0016 8 6 3.0805 6.0458 0.0015 9 6 3.9347 7.2874 0.0021 10 8 5.1437 7.1915 0.0021 11 7 3.3552 8.5041 0.0017 12 6 3.8607 9.8907 0.0025 13 6 2.5141 10.2712 -0.6393 14 8 2.5300 10.2452 -2.0679 15 6 1.9115 11.5347 -0.0812 16 1 2.4609 12.1224 0.6393 17 6 0.6591 11.9404 -0.4906 18 7 -0.1204 11.1079 -1.1457 19 14 0.0691 13.6724 -0.1147 20 1 -1.3008 13.8574 -0.6572 21 1 0.0511 13.8810 1.3555 22 1 0.9878 14.6555 -0.7429 23 6 1.9599 8.9851 0.0011 24 6 1.9180 3.6056 0.0050 25 6 1.2909 2.3748 -0.0008 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 4.0197 0.3784 0.0005 30 1 5.1370 2.5714 0.0019 31 1 2.4506 6.0374 0.8910 32 1 2.4519 6.0382 -0.8889 33 1 4.7187 10.0458 -0.6518 34 1 4.0055 10.3068 0.9995 35 1 1.6588 10.3547 -2.4730 36 1 0.1497 10.1841 -1.2667 37 1 1.5460 9.1341 0.9983 38 1 1.2996 8.4171 -0.6545 39 1 1.3298 4.5113 0.0091 40 1 0.2124 2.3182 -0.0011 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356570765.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:56:30 Heat of formation + Delta-G solvation = -110.183158 kcal Electronic energy + Delta-G solvation = -24491.808653 eV Core-core repulsion = 20659.359505 eV Total energy + Delta-G solvation = -3832.449147 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.130 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.73806 -41.23528 -40.13828 -39.08531 -37.27430 -36.17131 -34.33986 -32.32410 -31.61623 -30.37290 -28.70298 -27.91667 -27.29200 -26.45419 -23.81820 -22.95050 -22.14405 -20.32878 -19.86106 -19.52559 -18.78054 -18.09354 -17.61351 -17.58177 -16.84620 -16.70115 -16.57689 -16.18339 -15.82605 -15.68677 -15.46337 -15.05252 -14.58446 -14.52998 -14.34367 -14.05120 -13.92470 -13.56915 -13.49670 -13.40003 -12.98316 -12.69548 -12.62629 -12.57339 -12.38979 -11.90274 -11.78015 -11.48664 -11.22633 -11.18332 -10.72912 -10.26808 -10.14452 -9.73314 -8.81982 -8.67074 -6.47749 0.19324 0.37617 1.27445 1.36191 1.62758 1.66180 1.87317 2.31255 2.43502 2.56677 2.66106 2.90804 3.18033 3.48453 3.71811 3.75324 3.86219 3.87785 3.93155 4.12457 4.26407 4.29891 4.39032 4.41166 4.41343 4.47238 4.57222 4.61185 4.70231 4.74891 4.84486 4.96056 4.98677 5.21679 5.25702 5.50296 5.73678 6.10136 6.17821 6.44328 6.46992 6.58132 6.89545 6.93236 7.27300 8.66532 Molecular weight = 307.13amu Principal moments of inertia in cm(-1) A = 0.021520 B = 0.002753 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.793273 B =10168.874717 C =11193.354287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.332 6.332 3 C 0.083 3.917 4 C -0.114 4.114 5 C -0.118 4.118 6 C 0.070 3.930 7 O -0.316 6.316 8 C 0.059 3.941 9 C 0.526 3.474 10 O -0.581 6.581 11 N -0.631 5.631 12 C 0.124 3.876 13 C 0.198 3.802 14 O -0.577 6.577 15 C -0.631 4.631 16 H 0.062 0.938 17 C 0.001 3.999 18 N -0.914 5.914 19 Si 1.108 2.892 20 H -0.284 1.284 21 H -0.270 1.270 22 H -0.280 1.280 23 C 0.083 3.917 24 C -0.173 4.173 25 C -0.166 4.166 26 H 0.062 0.938 27 H 0.119 0.881 28 H 0.063 0.937 29 H 0.155 0.845 30 H 0.143 0.857 31 H 0.116 0.884 32 H 0.108 0.892 33 H 0.062 0.938 34 H 0.106 0.894 35 H 0.375 0.625 36 H 0.266 0.734 37 H 0.099 0.901 38 H 0.081 0.919 39 H 0.146 0.854 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.620 -17.748 3.528 18.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.247 6.247 3 C 0.038 3.962 4 C -0.133 4.133 5 C -0.137 4.137 6 C 0.026 3.974 7 O -0.230 6.230 8 C -0.019 4.019 9 C 0.316 3.684 10 O -0.462 6.462 11 N -0.366 5.366 12 C 0.002 3.998 13 C 0.157 3.843 14 O -0.384 6.384 15 C -0.669 4.669 16 H 0.080 0.920 17 C -0.201 4.201 18 N -0.551 5.551 19 Si 0.931 3.069 20 H -0.210 1.210 21 H -0.195 1.195 22 H -0.206 1.206 23 C -0.040 4.040 24 C -0.191 4.191 25 C -0.185 4.185 26 H 0.081 0.919 27 H 0.138 0.862 28 H 0.082 0.918 29 H 0.173 0.827 30 H 0.161 0.839 31 H 0.134 0.866 32 H 0.125 0.875 33 H 0.081 0.919 34 H 0.123 0.877 35 H 0.224 0.776 36 H 0.078 0.922 37 H 0.117 0.883 38 H 0.099 0.901 39 H 0.163 0.837 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -3.210 -17.210 3.373 17.828 hybrid contribution 0.479 -0.644 0.068 0.805 sum -2.731 -17.853 3.440 18.386 Atomic orbital electron populations 1.23337 0.76614 1.05603 1.02164 1.86054 1.23257 1.26232 1.89134 1.19092 0.92572 0.84830 0.99729 1.20431 0.91806 0.97889 1.03164 1.20430 1.00886 0.89004 1.03347 1.19251 0.92108 0.84818 1.01254 1.86109 1.35311 1.12032 1.89578 1.22331 0.92092 0.81911 1.05582 1.20298 0.87991 0.83967 0.76145 1.90664 1.16233 1.86780 1.52481 1.50069 1.11145 1.04190 1.71161 1.23354 0.97940 0.77797 1.00730 1.20333 0.92336 0.92570 0.79018 1.86251 1.35436 1.95917 1.20828 1.22429 1.04565 1.10260 1.29652 0.92001 1.27012 0.93110 1.07742 0.92214 1.71021 1.38616 1.05751 1.39742 0.83016 0.75762 0.71000 0.77154 1.20994 1.19505 1.20564 1.24386 0.82427 0.94984 1.02186 1.21302 0.92688 0.99802 1.05338 1.21299 1.01358 0.90916 1.04918 0.91894 0.86248 0.91810 0.82689 0.83912 0.86629 0.87457 0.91944 0.87661 0.77562 0.92238 0.88252 0.90079 0.83655 0.82671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.33 -6.11 10.50 -93.36 -0.98 -7.09 16 3 C 0.08 1.70 6.69 22.49 0.15 1.85 16 4 C -0.11 -2.38 9.98 22.35 0.22 -2.16 16 5 C -0.12 -2.84 9.98 22.35 0.22 -2.62 16 6 C 0.07 1.89 6.69 22.49 0.15 2.05 16 7 O -0.32 -10.37 9.67 -74.34 -0.72 -11.09 16 8 C 0.06 1.75 4.97 71.24 0.35 2.11 16 9 C 0.53 20.75 8.13 87.66 0.71 21.47 16 10 O -0.58 -27.62 17.23 16.01 0.28 -27.34 16 11 N -0.63 -24.83 3.61 -840.07 -3.03 -27.86 16 12 C 0.12 5.19 8.22 86.48 0.71 5.90 16 13 C 0.20 8.87 1.08 -10.87 -0.01 8.86 16 14 O -0.58 -27.44 13.45 -148.98 -2.00 -29.45 16 15 C -0.63 -30.43 8.56 25.60 0.22 -30.21 16 16 H 0.06 2.97 7.85 -2.91 -0.02 2.94 16 17 C 0.00 0.07 5.26 84.65 0.45 0.51 16 18 N -0.91 -45.47 12.80 21.45 0.27 -45.20 16 19 Si 1.11 43.55 29.93 68.60 2.05 45.60 16 20 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 21 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 22 H -0.28 -10.75 7.11 99.48 0.71 -10.04 16 23 C 0.08 3.13 7.05 86.49 0.61 3.74 16 24 C -0.17 -3.84 9.03 22.36 0.20 -3.64 16 25 C -0.17 -3.20 9.03 22.35 0.20 -2.99 16 26 H 0.06 0.56 7.66 -2.39 -0.02 0.54 16 27 H 0.12 0.72 8.14 -2.38 -0.02 0.70 16 28 H 0.06 0.55 7.66 -2.39 -0.02 0.53 16 29 H 0.16 2.54 8.06 -2.91 -0.02 2.51 16 30 H 0.14 3.20 8.06 -2.91 -0.02 3.17 16 31 H 0.12 2.78 7.65 -2.39 -0.02 2.76 16 32 H 0.11 2.78 7.67 -2.39 -0.02 2.76 16 33 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 34 H 0.11 4.06 8.09 -2.39 -0.02 4.04 16 35 H 0.38 17.40 6.95 -74.06 -0.52 16.88 16 36 H 0.27 12.75 5.53 -92.70 -0.51 12.24 16 37 H 0.10 3.61 8.09 -2.39 -0.02 3.59 16 38 H 0.08 2.83 7.80 -2.38 -0.02 2.82 16 39 H 0.15 2.73 6.29 -2.91 -0.02 2.71 16 40 H 0.16 2.11 6.29 -2.91 -0.02 2.09 16 Total: -1.00 -65.09 342.94 1.99 -63.10 By element: Atomic # 1 Polarization: 32.37 SS G_CDS: 0.82 Total: 33.18 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: 5.30 Total: 6.14 kcal Atomic # 7 Polarization: -70.30 SS G_CDS: -2.76 Total: -73.06 kcal Atomic # 8 Polarization: -71.54 SS G_CDS: -3.43 Total: -74.97 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.05 Total: 45.60 kcal Total: -65.09 1.99 -63.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356570765.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.088 kcal (2) G-P(sol) polarization free energy of solvation -65.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds