Wall clock time and date at job start Fri Apr 10 2020 17:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86800 * 120.00497 * 2 1 4 4 H 1.48498 * 109.47296 * 240.00095 * 3 2 1 5 5 H 1.48503 * 109.46731 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46809 * 119.99738 * 3 2 1 7 7 C 1.38959 * 119.99760 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99901 * 179.97438 * 7 2 1 9 9 N 1.37100 * 119.99971 * 0.02562 * 7 2 1 10 10 C 1.34769 * 120.00008 * 179.97438 * 9 7 2 11 11 O 1.21287 * 119.99970 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00014 * 179.97438 * 10 9 7 13 13 N 1.46497 * 109.47447 * 179.97438 * 12 10 9 14 14 C 1.34773 * 120.00407 * 179.97438 * 13 12 10 15 15 O 1.21592 * 120.00048 * 0.02562 * 14 13 12 16 16 N 1.34780 * 120.00340 * 180.02562 * 14 13 12 17 17 C 1.46497 * 120.00156 * 180.02562 * 16 14 13 18 18 H 1.08991 * 109.47169 * 325.00089 * 17 16 14 19 19 C 1.52999 * 109.47084 * 84.99768 * 17 16 14 20 20 O 1.42903 * 109.47256 * 65.00345 * 19 17 16 21 21 C 1.50699 * 109.46998 * 204.99776 * 17 16 14 22 22 C 1.38231 * 120.00361 * 319.72665 * 21 17 16 23 23 C 1.38233 * 120.00375 * 179.78509 * 22 21 17 24 24 C 1.38234 * 119.99828 * 0.44660 * 23 22 21 25 25 C 1.38241 * 120.00091 * 359.80887 * 24 23 22 26 26 C 1.38234 * 119.99846 * 359.97438 * 25 24 23 27 27 H 0.97006 * 119.99830 * 0.02562 * 1 2 3 28 28 H 0.97002 * 119.99863 * 359.97438 * 9 7 2 29 29 H 1.09008 * 109.47207 * 59.99995 * 12 10 9 30 30 H 1.09004 * 109.47284 * 300.00200 * 12 10 9 31 31 H 0.97004 * 120.00037 * 0.02562 * 13 12 10 32 32 H 0.97004 * 119.99534 * 0.02562 * 16 14 13 33 33 H 1.08997 * 109.47286 * 304.99906 * 19 17 16 34 34 H 1.09008 * 109.47201 * 184.99686 * 19 17 16 35 35 H 0.96700 * 114.00311 * 180.02562 * 20 19 17 36 36 H 1.08008 * 119.99926 * 359.97438 * 22 21 17 37 37 H 1.08003 * 120.00254 * 180.27408 * 23 22 21 38 38 H 1.08005 * 120.00164 * 179.83113 * 24 23 22 39 39 H 1.07992 * 119.99876 * 180.02562 * 25 24 23 40 40 H 1.07994 * 120.00385 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1020 1.6963 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1019 1.6962 1.2126 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2099 -3.5580 0.0001 12 6 1.2435 -4.8629 0.0011 13 7 2.1954 -5.9765 0.0004 14 6 1.7461 -7.2472 0.0013 15 8 0.5506 -7.4693 0.0022 16 7 2.6218 -8.2717 0.0011 17 6 2.1334 -9.6528 0.0015 18 1 1.2189 -9.7147 0.5912 19 6 1.8443 -10.0919 -1.4354 20 8 3.0644 -10.1227 -2.1787 21 6 3.1802 -10.5556 0.6017 22 6 4.5157 -10.3590 0.3039 23 6 5.4763 -11.1843 0.8579 24 6 5.1006 -12.2121 1.7025 25 6 3.7646 -12.4122 1.9962 26 6 2.8044 -11.5840 1.4457 27 1 -0.4850 0.8401 -0.0004 28 1 0.3533 -2.3907 0.0005 29 1 0.6165 -4.9209 -0.8887 30 1 0.6171 -4.9205 0.8914 31 1 3.1491 -5.7994 0.0000 32 1 3.5755 -8.0944 0.0007 33 1 1.1541 -9.3870 -1.8988 34 1 1.3979 -11.0864 -1.4286 35 1 2.9564 -10.3930 -3.1009 36 1 4.8089 -9.5585 -0.3593 37 1 6.5200 -11.0279 0.6287 38 1 5.8509 -12.8587 2.1332 39 1 3.4712 -13.2149 2.6563 40 1 1.7608 -11.7399 1.6754 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358276398.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:56:40 Heat of formation + Delta-G solvation = -115.115248 kcal Electronic energy + Delta-G solvation = -24223.926240 eV Core-core repulsion = 20423.555972 eV Total energy + Delta-G solvation = -3800.370268 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 307.136 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.48001 -40.40526 -39.78913 -37.87297 -36.25238 -35.68566 -35.26483 -33.38002 -32.43444 -31.69915 -29.64130 -28.56216 -26.35974 -24.47372 -23.61068 -22.21046 -21.43422 -21.25379 -20.12391 -19.73459 -18.32625 -18.13528 -17.40268 -17.07372 -16.90457 -16.51128 -16.22515 -16.00563 -15.80656 -15.58862 -15.54049 -15.11980 -14.89534 -14.33898 -14.18086 -13.95380 -13.78007 -13.59286 -13.53443 -13.17471 -12.89980 -12.80741 -12.46663 -12.13401 -11.93730 -11.85283 -11.55955 -11.49011 -10.92293 -10.55463 -10.44343 -10.10308 -9.89934 -9.76616 -9.62416 -8.50481 -6.00735 0.41014 0.55151 1.38465 1.42527 1.52585 1.60966 1.90310 2.09358 2.28984 2.89335 3.05384 3.16669 3.31028 3.36366 3.62263 3.99742 4.18415 4.21110 4.22832 4.32927 4.42348 4.45603 4.47185 4.54670 4.63068 4.71919 4.78372 5.09071 5.18422 5.30321 5.38433 5.40502 5.58749 5.66474 5.71970 5.90840 5.94062 6.13592 6.48687 6.87493 6.98044 7.03830 7.42393 7.50727 7.95128 8.66225 Molecular weight = 307.14amu Principal moments of inertia in cm(-1) A = 0.027457 B = 0.002405 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.525899 B =11639.386335 C =12000.810469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.011 4.011 3 Si 0.997 3.003 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.338 4.338 8 H 0.086 0.914 9 N -0.559 5.559 10 C 0.433 3.567 11 O -0.624 6.624 12 C 0.142 3.858 13 N -0.725 5.725 14 C 0.707 3.293 15 O -0.628 6.628 16 N -0.723 5.723 17 C 0.206 3.794 18 H 0.100 0.900 19 C 0.074 3.926 20 O -0.575 6.575 21 C -0.098 4.098 22 C -0.100 4.100 23 C -0.131 4.131 24 C -0.123 4.123 25 C -0.126 4.126 26 C -0.119 4.119 27 H 0.280 0.720 28 H 0.399 0.601 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.409 0.591 32 H 0.405 0.595 33 H 0.039 0.961 34 H 0.073 0.927 35 H 0.393 0.607 36 H 0.121 0.879 37 H 0.136 0.864 38 H 0.142 0.858 39 H 0.144 0.856 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.556 -24.776 0.126 25.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.211 4.211 3 Si 0.820 3.180 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.104 0.896 9 N -0.195 5.195 10 C 0.220 3.780 11 O -0.512 6.512 12 C 0.014 3.986 13 N -0.382 5.382 14 C 0.407 3.593 15 O -0.510 6.510 16 N -0.378 5.378 17 C 0.101 3.899 18 H 0.118 0.882 19 C -0.005 4.005 20 O -0.382 6.382 21 C -0.099 4.099 22 C -0.118 4.118 23 C -0.149 4.149 24 C -0.141 4.141 25 C -0.144 4.144 26 C -0.138 4.138 27 H 0.089 0.911 28 H 0.233 0.767 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.246 0.754 32 H 0.242 0.758 33 H 0.058 0.942 34 H 0.091 0.909 35 H 0.242 0.758 36 H 0.138 0.862 37 H 0.154 0.846 38 H 0.160 0.840 39 H 0.162 0.838 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.350 -24.592 0.693 25.177 hybrid contribution 0.238 1.033 -0.643 1.240 sum 5.587 -23.559 0.049 24.213 Atomic orbital electron populations 1.69676 1.06995 1.29701 1.49217 1.26134 0.96550 1.02678 0.95780 0.84929 0.77724 0.76238 0.79102 1.19475 1.19598 1.19503 1.19700 0.92959 0.83553 1.50506 0.89602 1.41825 1.09598 1.04561 1.63466 1.20419 0.88114 0.85922 0.83510 1.90468 1.15223 1.87553 1.58006 1.20592 0.90939 0.82976 1.04107 1.44696 1.10998 1.03307 1.79176 1.15898 0.85131 0.80708 0.77564 1.90871 1.15259 1.84640 1.60201 1.45036 1.09234 1.04204 1.79360 1.19823 0.96429 0.78358 0.95312 0.88212 1.22484 0.86545 1.00257 0.91252 1.86437 1.31469 1.92199 1.28142 1.19730 0.94133 0.97332 0.98707 1.21006 0.92441 0.99699 0.98687 1.21414 1.00117 0.95699 0.97677 1.21506 0.96814 0.97943 0.97849 1.21407 0.93021 0.99850 1.00133 1.21235 1.00808 0.95090 0.96622 0.91051 0.76666 0.88960 0.88950 0.75388 0.75806 0.94222 0.90851 0.75755 0.86155 0.84606 0.84026 0.83843 0.84703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.85 13.05 21.67 0.28 -48.57 16 2 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 3 Si 1.00 41.89 29.55 68.60 2.03 43.92 16 4 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 6 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 7 C -0.34 -18.72 9.68 84.04 0.81 -17.90 16 8 H 0.09 4.99 7.16 -2.91 -0.02 4.97 16 9 N -0.56 -28.29 5.29 -307.00 -1.62 -29.92 16 10 C 0.43 20.24 7.85 87.66 0.69 20.93 16 11 O -0.62 -32.61 15.24 -3.05 -0.05 -32.66 16 12 C 0.14 5.32 6.15 85.63 0.53 5.85 16 13 N -0.72 -24.74 5.53 -482.29 -2.67 -27.40 16 14 C 0.71 23.06 8.53 179.05 1.53 24.59 16 15 O -0.63 -23.90 16.01 -4.00 -0.06 -23.96 16 16 N -0.72 -18.36 4.98 -461.42 -2.30 -20.66 16 17 C 0.21 4.52 2.61 44.25 0.12 4.64 16 18 H 0.10 2.35 7.44 -2.39 -0.02 2.33 16 19 C 0.07 1.43 6.84 71.98 0.49 1.92 16 20 O -0.57 -10.31 12.02 -148.98 -1.79 -12.10 16 21 C -0.10 -1.92 4.83 -19.87 -0.10 -2.02 16 22 C -0.10 -1.91 8.04 22.27 0.18 -1.73 16 23 C -0.13 -2.14 10.05 22.27 0.22 -1.91 16 24 C -0.12 -1.76 10.05 22.27 0.22 -1.54 16 25 C -0.13 -1.82 10.05 22.27 0.22 -1.59 16 26 C -0.12 -2.00 9.67 22.27 0.22 -1.79 16 27 H 0.28 13.99 8.31 -92.70 -0.77 13.22 16 28 H 0.40 19.39 7.90 -92.71 -0.73 18.66 16 29 H 0.09 3.29 8.14 -2.38 -0.02 3.27 16 30 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 31 H 0.41 13.80 7.45 -92.71 -0.69 13.11 16 32 H 0.41 9.25 6.90 -92.71 -0.64 8.61 16 33 H 0.04 0.91 8.14 -2.39 -0.02 0.90 16 34 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 35 H 0.39 3.95 9.12 -74.06 -0.68 3.27 16 36 H 0.12 2.32 6.67 -2.91 -0.02 2.31 16 37 H 0.14 1.72 8.06 -2.91 -0.02 1.69 16 38 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 39 H 0.14 1.36 8.06 -2.91 -0.02 1.33 16 40 H 0.14 1.83 8.04 -2.91 -0.02 1.81 16 Total: -1.00 -69.64 348.55 -2.19 -71.84 By element: Atomic # 1 Polarization: 51.78 SS G_CDS: -1.62 Total: 50.16 kcal Atomic # 6 Polarization: 23.75 SS G_CDS: 5.60 Total: 29.35 kcal Atomic # 7 Polarization: -120.24 SS G_CDS: -6.30 Total: -126.55 kcal Atomic # 8 Polarization: -66.82 SS G_CDS: -1.90 Total: -68.72 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Total: -69.64 -2.19 -71.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358276398.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.278 kcal (2) G-P(sol) polarization free energy of solvation -69.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds