Wall clock time and date at job start Fri Apr 10 2020 17:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42901 * 109.46816 * 2 1 4 4 C 1.42902 * 113.99728 * 180.02562 * 3 2 1 5 5 H 1.08995 * 112.85186 * 21.68724 * 4 3 2 6 6 C 1.53788 * 113.60986 * 250.49152 * 4 3 2 7 7 C 1.53777 * 87.07934 * 219.93599 * 6 4 3 8 8 H 1.08997 * 113.61318 * 270.79932 * 7 6 4 9 9 N 1.46501 * 113.61352 * 139.98301 * 7 6 4 10 10 S 1.65608 * 120.00079 * 114.50167 * 9 7 6 11 11 O 1.42095 * 104.27841 * 181.07390 * 10 9 7 12 12 O 1.42102 * 104.27658 * 308.93104 * 10 9 7 13 13 C 1.81406 * 104.44741 * 65.00031 * 10 9 7 14 14 C 1.52991 * 109.46937 * 179.97438 * 13 10 9 15 15 C 1.50698 * 109.47171 * 180.02562 * 14 13 10 16 16 H 1.08003 * 120.00001 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00289 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99796 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00185 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47022 * 89.99865 * 19 17 15 21 21 H 1.48501 * 109.47501 * 209.99853 * 19 17 15 22 22 H 1.48502 * 109.47516 * 330.00235 * 19 17 15 23 23 C 1.53780 * 87.08475 * 25.43486 * 7 6 4 24 24 H 1.08997 * 113.61244 * 220.01811 * 23 7 6 25 25 O 1.42896 * 113.61349 * 89.11064 * 23 7 6 26 26 C 1.42904 * 113.99806 * 149.99956 * 25 23 7 27 27 H 1.08991 * 109.47753 * 59.99667 * 1 2 3 28 28 H 1.09004 * 109.46749 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47252 * 299.99601 * 1 2 3 30 30 H 1.09004 * 109.46729 * 240.00366 * 2 1 3 31 31 H 1.08997 * 109.47442 * 120.00020 * 2 1 3 32 32 H 1.09000 * 113.61121 * 105.38834 * 6 4 3 33 33 H 1.08992 * 113.69081 * 334.49795 * 6 4 3 34 34 H 0.97002 * 120.00027 * 294.50678 * 9 7 6 35 35 H 1.09000 * 109.47167 * 300.00580 * 13 10 9 36 36 H 1.09000 * 109.46895 * 59.99901 * 13 10 9 37 37 H 1.09008 * 109.47545 * 300.00011 * 14 13 10 38 38 H 1.09000 * 109.47377 * 60.00235 * 14 13 10 39 39 H 0.96998 * 119.99506 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.47197 * 300.00481 * 26 25 23 41 41 H 1.09006 * 109.46776 * 60.00286 * 26 25 23 42 42 H 1.08995 * 109.47322 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9263 0.5632 -0.3721 6 6 4.0082 1.9777 1.3275 7 6 4.9932 2.8060 0.4858 8 1 5.9164 2.2775 0.2484 9 7 5.2279 4.1524 1.0133 10 16 6.7274 4.5708 1.5780 11 8 6.5730 5.9116 2.0225 12 8 7.0619 3.5314 2.4875 13 6 7.7970 4.5045 0.1143 14 6 9.2272 4.8763 0.5105 15 6 10.1156 4.8218 -0.7055 16 1 9.7016 4.5489 -1.6650 17 6 11.4572 5.1194 -0.5931 18 7 11.9614 5.4514 0.5753 19 14 12.5585 5.0512 -2.1003 20 1 12.5736 6.3802 -2.7629 21 1 13.9383 4.6875 -1.6892 22 1 12.0393 4.0319 -3.0472 23 6 3.9474 2.7595 -0.6408 24 1 4.3790 2.6165 -1.6314 25 8 3.0069 3.8342 -0.5935 26 6 2.5024 4.2218 -1.8731 27 1 -0.3634 0.5138 -0.8898 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 4.4888 1.2036 1.9258 33 1 3.3084 2.5838 1.9027 34 1 4.5049 4.7989 1.0318 35 1 7.7846 3.4961 -0.2994 36 1 7.4329 5.2086 -0.6339 37 1 9.2392 5.8848 0.9239 38 1 9.5915 4.1725 1.2589 39 1 12.9053 5.6604 0.6544 40 1 3.3284 4.5448 -2.5067 41 1 1.9987 3.3737 -2.3371 42 1 1.7956 5.0426 -1.7516 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358904154.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:56:46 Heat of formation + Delta-G solvation = -147.218978 kcal Electronic energy + Delta-G solvation = -23996.752522 eV Core-core repulsion = 20298.141333 eV Total energy + Delta-G solvation = -3698.611190 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 307.133 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.24019 -37.40763 -36.56189 -35.97629 -35.38082 -33.89554 -32.67106 -31.16560 -30.91802 -27.02241 -25.61568 -25.04670 -24.12749 -22.98845 -21.68083 -20.12993 -18.97904 -17.72283 -17.47944 -16.73555 -16.25383 -15.98874 -15.87875 -15.45727 -15.32786 -14.98194 -14.55590 -14.37735 -13.98246 -13.64983 -13.40881 -13.31302 -12.84185 -12.55268 -12.31983 -12.06101 -11.91339 -11.75341 -11.66990 -11.55303 -11.46613 -11.30206 -11.11565 -11.07850 -10.96828 -10.95729 -10.41121 -10.38239 -9.95267 -9.76714 -9.48963 -9.33402 -8.96408 -8.51077 -6.13148 -4.18785 0.82368 3.02089 3.25016 3.31268 3.33569 3.45113 3.56364 4.24426 4.26818 4.35385 4.41038 4.65213 4.72142 4.78080 4.78972 4.86392 4.99368 5.00818 5.08194 5.21838 5.22306 5.28773 5.33981 5.51717 5.54109 5.60384 5.65123 5.74787 5.76257 5.83232 5.92866 6.22719 6.48395 6.86614 7.15171 7.23977 7.30261 7.36860 7.79655 8.16951 8.84618 9.45921 10.97920 Molecular weight = 307.13amu Principal moments of inertia in cm(-1) A = 0.020239 B = 0.003241 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.103096 B = 8637.575440 C = 9054.166486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.052 3.948 3 O -0.359 6.359 4 C 0.043 3.957 5 H 0.096 0.904 6 C -0.160 4.160 7 C 0.133 3.867 8 H 0.123 0.877 9 N -1.104 6.104 10 S 2.590 3.410 11 O -0.966 6.966 12 O -0.966 6.966 13 C -0.591 4.591 14 C 0.028 3.972 15 C -0.520 4.520 16 H 0.061 0.939 17 C 0.057 3.943 18 N -0.890 5.890 19 Si 0.900 3.100 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.273 1.273 23 C 0.065 3.935 24 H 0.084 0.916 25 O -0.348 6.348 26 C 0.033 3.967 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.046 0.954 31 H 0.048 0.952 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.420 0.580 35 H 0.116 0.884 36 H 0.121 0.879 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.265 0.735 40 H 0.042 0.958 41 H 0.042 0.958 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.274 -9.989 -4.788 23.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.025 4.025 3 O -0.277 6.277 4 C -0.016 4.016 5 H 0.114 0.886 6 C -0.200 4.200 7 C 0.023 3.977 8 H 0.141 0.859 9 N -0.860 5.860 10 S 2.687 3.313 11 O -0.957 6.957 12 O -0.955 6.955 13 C -0.724 4.724 14 C -0.011 4.011 15 C -0.560 4.560 16 H 0.079 0.921 17 C -0.145 4.145 18 N -0.528 5.528 19 Si 0.727 3.273 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.198 1.198 23 C 0.004 3.996 24 H 0.102 0.898 25 O -0.265 6.265 26 C -0.063 4.063 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.119 0.881 34 H 0.255 0.745 35 H 0.135 0.865 36 H 0.139 0.861 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.075 0.925 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -20.977 -9.587 -3.588 23.341 hybrid contribution 0.639 -0.260 -1.773 1.903 sum -20.337 -9.847 -5.361 23.223 Atomic orbital electron populations 1.21727 0.93877 1.02052 1.03108 1.22540 0.95600 0.84385 0.99955 1.88033 1.19607 1.25528 1.94556 1.24173 0.82144 0.97676 0.97651 0.88617 1.23946 0.98569 1.00117 0.97345 1.22230 0.97580 0.84000 0.93850 0.85938 1.55550 1.29894 1.19669 1.80847 1.05638 0.73958 0.73966 0.77695 1.93554 1.84722 1.36967 1.80427 1.93550 1.83240 1.58259 1.60487 1.30477 1.13871 1.09900 1.18185 1.18960 0.85395 0.98024 0.98753 1.21001 0.93087 1.47758 0.94134 0.92084 1.25073 0.98209 0.94955 0.96282 1.69957 1.13870 1.45701 1.23285 0.86472 0.79796 0.78436 0.82569 1.20476 1.21010 1.19794 1.23915 0.89970 0.87012 0.98688 0.89823 1.87832 1.59203 1.50594 1.28919 1.22823 0.98486 0.99828 0.85179 0.92003 0.91288 0.91817 0.93571 0.93326 0.90295 0.88119 0.74491 0.86533 0.86072 0.94814 0.94803 0.92518 0.93903 0.93892 0.89546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 10.28 37.16 0.38 -0.63 16 2 C 0.05 0.41 6.51 37.16 0.24 0.65 16 3 O -0.36 -3.80 9.98 -50.21 -0.50 -4.30 16 4 C 0.04 0.41 4.24 -25.91 -0.11 0.30 16 5 H 0.10 0.70 7.89 -51.93 -0.41 0.29 16 6 C -0.16 -1.79 7.64 -25.92 -0.20 -1.98 16 7 C 0.13 1.54 4.17 -67.12 -0.28 1.26 16 8 H 0.12 1.23 7.67 -51.93 -0.40 0.84 16 9 N -1.10 -15.15 5.63 -4.20 -0.02 -15.18 16 10 S 2.59 46.60 5.41 -107.50 -0.58 46.01 16 11 O -0.97 -20.51 18.08 -57.54 -1.04 -21.55 16 12 O -0.97 -19.95 17.82 -57.54 -1.03 -20.98 16 13 C -0.59 -11.09 6.01 37.15 0.22 -10.87 16 14 C 0.03 0.70 4.98 -27.89 -0.14 0.56 16 15 C -0.52 -14.26 9.11 -34.44 -0.31 -14.57 16 16 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 19 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 C 0.07 0.67 4.26 -25.92 -0.11 0.56 16 24 H 0.08 0.70 7.87 -51.93 -0.41 0.29 16 25 O -0.35 -3.97 9.24 -50.21 -0.46 -4.43 16 26 C 0.03 0.29 10.85 101.05 1.10 1.39 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 34 H 0.42 5.45 8.01 -34.48 -0.28 5.17 16 35 H 0.12 1.89 7.75 -51.92 -0.40 1.49 16 36 H 0.12 2.06 8.14 -51.92 -0.42 1.64 16 37 H 0.03 0.91 8.14 -51.92 -0.42 0.49 16 38 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 364.90 15.07 5.50 5.50 Total: -1.00 -35.78 364.90 -8.66 -44.44 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -6.93 Total: 1.96 kcal Atomic # 6 Polarization: -22.51 SS G_CDS: 0.70 Total: -21.81 kcal Atomic # 7 Polarization: -41.58 SS G_CDS: 0.71 Total: -40.87 kcal Atomic # 8 Polarization: -48.23 SS G_CDS: -3.03 Total: -51.26 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 46.60 SS G_CDS: -0.58 Total: 46.01 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.78 -8.66 -44.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358904154.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.779 kcal (2) G-P(sol) polarization free energy of solvation -35.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds