Wall clock time and date at job start Fri Apr 10 2020 17:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42901 * 109.46816 * 2 1 4 4 C 1.42902 * 113.99728 * 180.02562 * 3 2 1 5 5 H 1.08995 * 112.85186 * 21.68724 * 4 3 2 6 6 C 1.53788 * 113.60986 * 250.49152 * 4 3 2 7 7 C 1.53777 * 87.07934 * 219.93599 * 6 4 3 8 8 H 1.08997 * 113.61318 * 270.79932 * 7 6 4 9 9 N 1.46501 * 113.61352 * 139.98301 * 7 6 4 10 10 S 1.65608 * 120.00079 * 114.50167 * 9 7 6 11 11 O 1.42095 * 104.27841 * 181.07390 * 10 9 7 12 12 O 1.42102 * 104.27658 * 308.93104 * 10 9 7 13 13 C 1.81406 * 104.44741 * 65.00031 * 10 9 7 14 14 C 1.52991 * 109.46937 * 179.97438 * 13 10 9 15 15 C 1.50698 * 109.47171 * 180.02562 * 14 13 10 16 16 H 1.08003 * 120.00001 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00289 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99796 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00185 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47022 * 89.99865 * 19 17 15 21 21 H 1.48501 * 109.47501 * 209.99853 * 19 17 15 22 22 H 1.48502 * 109.47516 * 330.00235 * 19 17 15 23 23 C 1.53780 * 87.08475 * 25.43486 * 7 6 4 24 24 H 1.08997 * 113.61244 * 220.01811 * 23 7 6 25 25 O 1.42896 * 113.61349 * 89.11064 * 23 7 6 26 26 C 1.42904 * 113.99806 * 149.99956 * 25 23 7 27 27 H 1.08991 * 109.47753 * 59.99667 * 1 2 3 28 28 H 1.09004 * 109.46749 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47252 * 299.99601 * 1 2 3 30 30 H 1.09004 * 109.46729 * 240.00366 * 2 1 3 31 31 H 1.08997 * 109.47442 * 120.00020 * 2 1 3 32 32 H 1.09000 * 113.61121 * 105.38834 * 6 4 3 33 33 H 1.08992 * 113.69081 * 334.49795 * 6 4 3 34 34 H 0.97002 * 120.00027 * 294.50678 * 9 7 6 35 35 H 1.09000 * 109.47167 * 300.00580 * 13 10 9 36 36 H 1.09000 * 109.46895 * 59.99901 * 13 10 9 37 37 H 1.09008 * 109.47545 * 300.00011 * 14 13 10 38 38 H 1.09000 * 109.47377 * 60.00235 * 14 13 10 39 39 H 0.96998 * 119.99506 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.47197 * 300.00481 * 26 25 23 41 41 H 1.09006 * 109.46776 * 60.00286 * 26 25 23 42 42 H 1.08995 * 109.47322 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9263 0.5632 -0.3721 6 6 4.0082 1.9777 1.3275 7 6 4.9932 2.8060 0.4858 8 1 5.9164 2.2775 0.2484 9 7 5.2279 4.1524 1.0133 10 16 6.7274 4.5708 1.5780 11 8 6.5730 5.9116 2.0225 12 8 7.0619 3.5314 2.4875 13 6 7.7970 4.5045 0.1143 14 6 9.2272 4.8763 0.5105 15 6 10.1156 4.8218 -0.7055 16 1 9.7016 4.5489 -1.6650 17 6 11.4572 5.1194 -0.5931 18 7 11.9614 5.4514 0.5753 19 14 12.5585 5.0512 -2.1003 20 1 12.5736 6.3802 -2.7629 21 1 13.9383 4.6875 -1.6892 22 1 12.0393 4.0319 -3.0472 23 6 3.9474 2.7595 -0.6408 24 1 4.3790 2.6165 -1.6314 25 8 3.0069 3.8342 -0.5935 26 6 2.5024 4.2218 -1.8731 27 1 -0.3634 0.5138 -0.8898 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 4.4888 1.2036 1.9258 33 1 3.3084 2.5838 1.9027 34 1 4.5049 4.7989 1.0318 35 1 7.7846 3.4961 -0.2994 36 1 7.4329 5.2086 -0.6339 37 1 9.2392 5.8848 0.9239 38 1 9.5915 4.1725 1.2589 39 1 12.9053 5.6604 0.6544 40 1 3.3284 4.5448 -2.5067 41 1 1.9987 3.3737 -2.3371 42 1 1.7956 5.0426 -1.7516 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358904154.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:56:45 Heat of formation + Delta-G solvation = -174.929906 kcal Electronic energy + Delta-G solvation = -23997.954158 eV Core-core repulsion = 20298.141333 eV Total energy + Delta-G solvation = -3699.812826 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 307.133 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.03007 -38.16307 -38.08326 -37.00521 -36.81061 -35.87698 -33.64866 -33.10942 -31.56989 -27.70522 -27.57948 -25.83767 -24.96719 -23.61868 -23.54132 -20.96823 -20.33786 -19.13249 -18.50155 -18.31700 -17.32825 -17.01981 -16.80070 -16.60007 -16.50644 -16.44807 -15.93525 -15.41256 -15.00104 -14.69601 -14.46675 -14.43805 -14.11225 -13.71527 -13.42904 -13.31561 -13.17145 -13.08741 -12.93924 -12.92035 -12.76067 -12.65136 -12.31286 -12.22756 -12.17642 -12.11433 -11.81113 -11.79720 -11.65495 -11.12042 -10.65811 -10.63090 -10.29417 -10.06212 -8.24485 -6.38399 -0.65974 1.42303 1.44034 1.55028 1.81752 2.39291 2.63841 2.78697 2.94524 3.09244 3.30780 3.47922 3.59948 3.83267 3.97287 4.04379 4.12474 4.20543 4.23745 4.29642 4.41238 4.55587 4.56071 4.62775 4.67160 4.78078 4.86632 4.92312 4.97099 5.07902 5.08751 5.26413 5.29453 5.30627 5.34273 5.70170 6.06663 6.08805 6.25227 6.48422 6.75775 7.31840 8.87901 Molecular weight = 307.13amu Principal moments of inertia in cm(-1) A = 0.020239 B = 0.003241 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.103096 B = 8637.575440 C = 9054.166486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.045 3.955 3 O -0.380 6.380 4 C 0.050 3.950 5 H 0.124 0.876 6 C -0.167 4.167 7 C 0.115 3.885 8 H 0.141 0.859 9 N -1.088 6.088 10 S 2.615 3.385 11 O -1.003 7.003 12 O -0.994 6.994 13 C -0.585 4.585 14 C 0.019 3.981 15 C -0.536 4.536 16 H 0.078 0.922 17 C -0.006 4.006 18 N -0.936 5.936 19 Si 0.974 3.026 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.255 1.255 23 C 0.066 3.934 24 H 0.109 0.891 25 O -0.372 6.372 26 C 0.030 3.970 27 H 0.058 0.942 28 H 0.087 0.913 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.425 0.575 35 H 0.148 0.852 36 H 0.143 0.857 37 H 0.003 0.997 38 H 0.008 0.992 39 H 0.267 0.733 40 H 0.051 0.949 41 H 0.049 0.951 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.135 -11.493 -7.395 26.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.031 4.031 3 O -0.299 6.299 4 C -0.010 4.010 5 H 0.142 0.858 6 C -0.207 4.207 7 C 0.007 3.993 8 H 0.159 0.841 9 N -0.847 5.847 10 S 2.713 3.287 11 O -0.994 6.994 12 O -0.984 6.984 13 C -0.717 4.717 14 C -0.020 4.020 15 C -0.575 4.575 16 H 0.097 0.903 17 C -0.204 4.204 18 N -0.576 5.576 19 Si 0.798 3.202 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.178 1.178 23 C 0.005 3.995 24 H 0.126 0.874 25 O -0.290 6.290 26 C -0.067 4.067 27 H 0.077 0.923 28 H 0.106 0.894 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.262 0.738 35 H 0.166 0.834 36 H 0.161 0.839 37 H 0.022 0.978 38 H 0.027 0.973 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -21.860 -11.095 -6.205 25.288 hybrid contribution 0.796 0.176 -0.924 1.232 sum -21.064 -10.920 -7.129 24.774 Atomic orbital electron populations 1.21744 0.93359 1.03112 1.02416 1.22735 0.96122 0.83409 1.00864 1.88012 1.20066 1.27234 1.94560 1.24207 0.82099 0.98501 0.96150 0.85829 1.23953 0.98390 1.00067 0.98261 1.22701 0.99036 0.82633 0.94968 0.84103 1.55090 1.27907 1.20952 1.80756 1.04617 0.74442 0.72575 0.77110 1.93497 1.85556 1.39050 1.81259 1.93509 1.84248 1.58948 1.61688 1.30334 1.09893 1.12307 1.19209 1.18829 0.89466 0.95822 0.97849 1.21530 0.93708 1.47027 0.95280 0.90343 1.26134 1.00196 0.94502 0.99547 1.70111 1.14337 1.47145 1.25958 0.85309 0.77324 0.79004 0.78588 1.19809 1.21017 1.17849 1.23974 0.89294 0.86982 0.99203 0.87358 1.87801 1.59587 1.51083 1.30495 1.22951 0.98975 1.00329 0.84397 0.92284 0.89376 0.92895 0.91986 0.92997 0.89955 0.89945 0.73804 0.83390 0.83910 0.97823 0.97327 0.92455 0.93028 0.93251 0.88988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 10.28 71.98 0.74 -1.02 16 2 C 0.04 0.61 6.51 71.98 0.47 1.08 16 3 O -0.38 -7.32 9.98 -134.66 -1.34 -8.67 16 4 C 0.05 0.83 4.24 31.12 0.13 0.96 16 5 H 0.12 1.35 7.89 -2.39 -0.02 1.33 16 6 C -0.17 -3.50 7.64 31.12 0.24 -3.26 16 7 C 0.11 2.43 4.17 45.52 0.19 2.62 16 8 H 0.14 2.42 7.67 -2.39 -0.02 2.40 16 9 N -1.09 -28.60 5.63 -167.20 -0.94 -29.54 16 10 S 2.62 93.70 5.41 -56.49 -0.31 93.39 16 11 O -1.00 -43.33 18.08 -127.65 -2.31 -45.63 16 12 O -0.99 -41.31 17.82 -127.65 -2.27 -43.58 16 13 C -0.58 -21.25 6.01 71.98 0.43 -20.81 16 14 C 0.02 0.99 4.98 29.84 0.15 1.14 16 15 C -0.54 -29.14 9.11 25.60 0.23 -28.91 16 16 H 0.08 3.88 7.74 -2.91 -0.02 3.85 16 17 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 18 N -0.94 -56.77 13.29 21.45 0.28 -56.49 16 19 Si 0.97 42.63 29.54 68.60 2.03 44.66 16 20 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 21 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 22 H -0.25 -10.30 7.11 99.48 0.71 -9.60 16 23 C 0.07 1.18 4.26 31.12 0.13 1.31 16 24 H 0.11 1.38 7.87 -2.39 -0.02 1.36 16 25 O -0.37 -7.78 9.24 -134.66 -1.24 -9.03 16 26 C 0.03 0.45 10.85 113.37 1.23 1.68 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 29 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.43 10.67 8.01 -96.74 -0.77 9.90 16 35 H 0.15 4.39 7.75 -2.39 -0.02 4.37 16 36 H 0.14 4.56 8.14 -2.39 -0.02 4.54 16 37 H 0.00 0.19 8.14 -2.38 -0.02 0.17 16 38 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 40 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 42 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -78.32 364.90 -1.47 -79.79 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: 0.23 Total: 20.16 kcal Atomic # 6 Polarization: -49.47 SS G_CDS: 4.41 Total: -45.06 kcal Atomic # 7 Polarization: -85.37 SS G_CDS: -0.66 Total: -86.03 kcal Atomic # 8 Polarization: -99.74 SS G_CDS: -7.17 Total: -106.91 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Atomic # 16 Polarization: 93.70 SS G_CDS: -0.31 Total: 93.39 kcal Total: -78.32 -1.47 -79.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358904154.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.135 kcal (2) G-P(sol) polarization free energy of solvation -78.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds