Wall clock time and date at job start Fri Apr 10 2020 17:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42897 * 114.00587 * 2 1 4 4 C 1.53002 * 110.45422 * 301.65721 * 3 2 1 5 5 N 1.46500 * 109.47508 * 299.38758 * 4 3 2 6 6 S 1.65598 * 120.00340 * 163.97530 * 5 4 3 7 7 O 1.42093 * 104.27931 * 181.07274 * 6 5 4 8 8 O 1.42108 * 104.27563 * 308.92786 * 6 5 4 9 9 C 1.81392 * 104.44987 * 64.99615 * 6 5 4 10 10 C 1.53008 * 109.47306 * 179.97438 * 9 6 5 11 11 C 1.53002 * 109.47358 * 180.02562 * 10 9 6 12 12 C 1.50694 * 109.46849 * 180.02562 * 11 10 9 13 13 H 1.07997 * 120.00294 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99629 * 180.02562 * 12 11 10 15 15 N 1.31515 * 120.00364 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00020 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47176 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47656 * 119.99778 * 16 14 12 19 19 H 1.48500 * 109.47138 * 239.99916 * 16 14 12 20 20 C 1.54508 * 110.51422 * 64.25929 * 3 2 1 21 21 C 1.54482 * 104.06049 * 118.64530 * 20 3 2 22 22 O 1.44427 * 104.80281 * 23.98746 * 21 20 3 23 23 C 1.44420 * 105.27098 * 319.48084 * 22 21 20 24 24 H 1.08999 * 109.47369 * 64.63833 * 1 2 3 25 25 H 1.09000 * 109.47808 * 184.64774 * 1 2 3 26 26 H 1.09008 * 109.47259 * 304.64677 * 1 2 3 27 27 H 1.09006 * 109.47029 * 59.38739 * 4 3 2 28 28 H 1.09006 * 109.47485 * 179.38509 * 4 3 2 29 29 H 0.96996 * 119.99595 * 343.97437 * 5 4 3 30 30 H 1.08996 * 109.47615 * 300.00422 * 9 6 5 31 31 H 1.09007 * 109.47186 * 60.00647 * 9 6 5 32 32 H 1.08995 * 109.46758 * 300.00656 * 10 9 6 33 33 H 1.09001 * 109.46654 * 60.00008 * 10 9 6 34 34 H 1.09001 * 109.46778 * 300.00323 * 11 10 9 35 35 H 1.09003 * 109.46664 * 60.00057 * 11 10 9 36 36 H 0.97000 * 120.00338 * 180.02562 * 15 14 12 37 37 H 1.08999 * 110.51188 * 237.29414 * 20 3 2 38 38 H 1.08997 * 110.50606 * 359.86792 * 20 3 2 39 39 H 1.09007 * 110.36620 * 142.81086 * 21 20 3 40 40 H 1.08997 * 110.37427 * 265.04140 * 21 20 3 41 41 H 1.08999 * 110.38021 * 281.68079 * 23 22 21 42 42 H 1.09004 * 110.37184 * 159.34490 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5405 2.0999 -1.2202 5 7 1.9544 1.4072 -2.4430 6 16 1.2614 1.8032 -3.8940 7 8 1.8783 0.9274 -4.8276 8 8 -0.1360 1.7405 -3.6436 9 6 1.7787 3.5163 -4.1902 10 6 1.1953 4.0029 -5.5183 11 6 1.6322 5.4478 -5.7685 12 6 1.0570 5.9271 -7.0762 13 1 0.4411 5.2674 -7.6694 14 6 1.3171 7.2079 -7.5155 15 7 2.0666 8.0114 -6.7929 16 14 0.6036 7.8025 -9.1362 17 1 -0.1987 6.7153 -9.7524 18 1 -0.2652 8.9817 -8.8918 19 1 1.7078 8.1828 -10.0533 20 6 1.6564 2.0557 1.3035 21 6 3.0262 2.3261 1.9645 22 8 3.9731 2.3031 0.8742 23 6 3.5520 1.2115 0.0276 24 1 -0.3634 0.4402 -0.9286 25 1 -0.3635 -1.0242 0.0833 26 1 -0.3634 0.5843 0.8455 27 1 0.4540 2.1860 -1.2015 28 1 1.9842 3.0953 -1.1986 29 1 2.6344 0.7167 -2.4027 30 1 1.4176 4.1502 -3.3803 31 1 2.8669 3.5652 -4.2322 32 1 1.5569 3.3690 -6.3279 33 1 0.1072 3.9540 -5.4768 34 1 1.2709 6.0819 -4.9588 35 1 2.7203 5.4962 -5.8101 36 1 2.2493 8.9126 -7.1017 37 1 1.1490 2.9937 1.0785 38 1 1.0361 1.4317 1.9469 39 1 3.0279 3.3032 2.4479 40 1 3.2592 1.5451 2.6882 41 1 3.8664 0.2583 0.4528 42 1 3.9575 1.3320 -0.9769 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359229926.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:56:54 Heat of formation + Delta-G solvation = -171.980462 kcal Electronic energy + Delta-G solvation = -24126.646518 eV Core-core repulsion = 20426.961590 eV Total energy + Delta-G solvation = -3699.684928 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 307.133 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.62895 -37.61105 -36.91957 -35.79928 -35.03959 -34.68951 -32.20112 -31.67133 -29.56754 -27.82850 -27.12136 -25.73560 -23.74682 -23.04248 -20.79030 -20.57404 -19.26419 -17.99973 -17.46618 -16.91325 -16.48869 -16.30798 -15.86406 -15.59972 -15.44255 -15.19813 -14.85456 -14.49535 -14.34498 -14.13087 -13.51926 -13.29455 -12.96009 -12.61493 -12.29772 -12.21229 -11.98574 -11.97708 -11.85755 -11.80058 -11.75121 -11.60563 -11.26088 -11.00311 -10.94504 -10.85426 -10.44102 -10.17690 -9.99770 -9.97402 -9.77314 -9.33920 -9.09367 -8.42163 -6.06764 -4.09880 0.41778 2.74373 3.23372 3.28723 3.36333 3.41194 3.56026 3.89814 4.02696 4.12463 4.31599 4.41662 4.41787 4.66037 4.69771 4.96592 4.99905 5.10543 5.13628 5.15665 5.18303 5.24172 5.29753 5.31937 5.36655 5.39474 5.46103 5.53097 5.66636 5.86764 6.23327 6.24447 6.42577 6.72939 6.84967 6.88894 7.55844 7.65382 7.91270 8.31600 8.96618 9.55006 11.04454 Molecular weight = 307.13amu Principal moments of inertia in cm(-1) A = 0.021175 B = 0.003138 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.983809 B = 8919.929921 C = 9637.859997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.366 6.366 3 C 0.079 3.921 4 C 0.096 3.904 5 N -1.120 6.120 6 S 2.601 3.399 7 O -0.961 6.961 8 O -0.963 6.963 9 C -0.608 4.608 10 C -0.106 4.106 11 C 0.030 3.970 12 C -0.526 4.526 13 H 0.059 0.941 14 C 0.057 3.943 15 N -0.895 5.895 16 Si 0.894 3.106 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.283 1.283 20 C -0.182 4.182 21 C 0.047 3.953 22 O -0.364 6.364 23 C 0.058 3.942 24 H 0.056 0.944 25 H 0.089 0.911 26 H 0.045 0.955 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.416 0.584 30 H 0.126 0.874 31 H 0.130 0.870 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.020 0.980 35 H 0.021 0.979 36 H 0.261 0.739 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.404 -13.984 19.644 24.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.285 6.285 3 C 0.038 3.962 4 C -0.031 4.031 5 N -0.879 5.879 6 S 2.697 3.303 7 O -0.951 6.951 8 O -0.953 6.953 9 C -0.740 4.740 10 C -0.145 4.145 11 C -0.008 4.008 12 C -0.564 4.564 13 H 0.077 0.923 14 C -0.144 4.144 15 N -0.534 5.534 16 Si 0.722 3.278 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.220 4.220 21 C -0.030 4.030 22 O -0.282 6.282 23 C -0.020 4.020 24 H 0.075 0.925 25 H 0.107 0.893 26 H 0.064 0.936 27 H 0.106 0.894 28 H 0.101 0.899 29 H 0.251 0.749 30 H 0.144 0.856 31 H 0.149 0.851 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.039 0.961 35 H 0.039 0.961 36 H 0.071 0.929 37 H 0.107 0.893 38 H 0.110 0.890 39 H 0.115 0.885 40 H 0.082 0.918 41 H 0.094 0.906 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.074 -14.301 19.104 23.864 hybrid contribution -0.126 0.846 -0.498 0.989 sum -0.053 -13.455 18.606 22.962 Atomic orbital electron populations 1.22925 0.80463 1.03157 1.01170 1.87937 1.20380 1.25370 1.94823 1.23052 0.95208 0.84384 0.93595 1.21874 1.01269 0.95971 0.84027 1.55638 1.57930 1.51849 1.22440 1.05317 0.74567 0.77916 0.72522 1.93583 1.77651 1.62898 1.60966 1.93555 1.30888 1.86935 1.83943 1.30547 1.12229 1.21961 1.09308 1.21506 0.99958 1.02646 0.90410 1.19070 0.97009 0.87669 0.97074 1.21289 1.31475 0.98214 1.05452 0.92314 1.25023 0.95143 0.96806 0.97422 1.69966 1.37929 1.07421 1.38076 0.86500 0.78947 0.78775 0.83597 1.19598 1.20943 1.20933 1.23565 0.99463 1.02138 0.96861 1.23379 0.86714 1.02731 0.90148 1.89223 1.50876 1.51558 1.36584 1.23333 0.90209 0.91599 0.96813 0.92504 0.89298 0.93626 0.89403 0.89869 0.74888 0.85559 0.85132 0.91539 0.91586 0.96124 0.96060 0.92939 0.89297 0.89033 0.88517 0.91824 0.90566 0.87625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 10.22 101.05 1.03 1.19 16 2 O -0.37 -3.47 10.26 -35.23 -0.36 -3.83 16 3 C 0.08 0.67 0.77 -89.05 -0.07 0.61 16 4 C 0.10 0.90 4.50 -4.04 -0.02 0.88 16 5 N -1.12 -11.95 5.49 -10.61 -0.06 -12.00 16 6 S 2.60 37.32 5.46 -107.50 -0.59 36.73 16 7 O -0.96 -16.75 18.08 -57.54 -1.04 -17.79 16 8 O -0.96 -16.28 17.48 -57.54 -1.01 -17.29 16 9 C -0.61 -9.17 6.07 37.16 0.23 -8.94 16 10 C -0.11 -2.13 5.16 -26.73 -0.14 -2.26 16 11 C 0.03 0.76 4.97 -27.88 -0.14 0.62 16 12 C -0.53 -14.79 9.11 -34.44 -0.31 -15.10 16 13 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 16 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 17 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 C -0.18 -1.22 5.90 -25.16 -0.15 -1.37 16 21 C 0.05 0.33 7.63 37.94 0.29 0.62 16 22 O -0.36 -3.54 11.65 -35.23 -0.41 -3.95 16 23 C 0.06 0.49 6.66 37.93 0.25 0.74 16 24 H 0.06 0.55 6.71 -51.93 -0.35 0.20 16 25 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.29 6.59 -51.92 -0.34 -0.05 16 27 H 0.09 0.83 6.22 -51.93 -0.32 0.50 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.42 3.89 7.51 -34.47 -0.26 3.63 16 30 H 0.13 1.67 8.14 -51.93 -0.42 1.24 16 31 H 0.13 1.77 8.14 -51.92 -0.42 1.35 16 32 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.09 0.53 7.73 -51.93 -0.40 0.13 16 38 H 0.09 0.53 6.83 -51.93 -0.35 0.17 16 39 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 0.61 8.08 -51.93 -0.42 0.19 16 42 H 0.11 0.84 6.76 -51.93 -0.35 0.49 16 LS Contribution 352.92 15.07 5.32 5.32 Total: -1.00 -35.60 352.92 -8.12 -43.72 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -6.57 Total: -0.18 kcal Atomic # 6 Polarization: -22.36 SS G_CDS: 0.88 Total: -21.48 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.68 Total: -37.78 kcal Atomic # 8 Polarization: -40.04 SS G_CDS: -2.82 Total: -42.85 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 37.32 SS G_CDS: -0.59 Total: 36.73 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.60 -8.12 -43.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359229926.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.259 kcal (2) G-P(sol) polarization free energy of solvation -35.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds