Wall clock time and date at job start Fri Apr 10 2020 17:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 114.00050 * 2 1 4 4 C 1.52995 * 110.91158 * 301.76788 * 3 2 1 5 5 N 1.46506 * 109.46993 * 299.60647 * 4 3 2 6 6 S 1.65598 * 119.99997 * 165.25865 * 5 4 3 7 7 O 1.42095 * 104.27621 * 181.07000 * 6 5 4 8 8 O 1.42098 * 104.27566 * 308.92834 * 6 5 4 9 9 C 1.81404 * 104.45055 * 64.99972 * 6 5 4 10 10 C 1.52995 * 109.47222 * 180.02562 * 9 6 5 11 11 C 1.52995 * 109.46974 * 180.02562 * 10 9 6 12 12 C 1.50703 * 109.46917 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00017 * 0.02562 * 12 11 10 14 14 C 1.37882 * 120.00038 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99470 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00055 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47115 * 60.00081 * 16 14 12 18 18 H 1.48497 * 109.47135 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47214 * 300.00259 * 16 14 12 20 20 C 1.55453 * 110.83325 * 178.09081 * 3 2 1 21 21 C 1.54949 * 100.99128 * 275.89363 * 20 3 2 22 22 O 1.43640 * 105.13529 * 323.60917 * 21 20 3 23 23 C 1.43231 * 109.97641 * 24.42503 * 22 21 20 24 24 H 1.09002 * 109.46614 * 63.10408 * 1 2 3 25 25 H 1.08998 * 109.47305 * 183.10643 * 1 2 3 26 26 H 1.09001 * 109.47428 * 303.11165 * 1 2 3 27 27 H 1.08996 * 109.47067 * 59.60484 * 4 3 2 28 28 H 1.09004 * 109.46898 * 179.61105 * 4 3 2 29 29 H 0.97005 * 119.99879 * 345.26303 * 5 4 3 30 30 H 1.09000 * 109.46956 * 300.00490 * 9 6 5 31 31 H 1.09005 * 109.46845 * 59.99877 * 9 6 5 32 32 H 1.09007 * 109.47144 * 299.99956 * 10 9 6 33 33 H 1.08997 * 109.47301 * 59.99754 * 10 9 6 34 34 H 1.08999 * 109.47537 * 299.99516 * 11 10 9 35 35 H 1.08994 * 109.47362 * 60.00195 * 11 10 9 36 36 H 0.96998 * 119.99287 * 179.97438 * 15 14 12 37 37 H 1.08993 * 111.05650 * 157.97445 * 20 3 2 38 38 H 1.09007 * 111.17948 * 33.86106 * 20 3 2 39 39 H 1.08998 * 110.31098 * 204.68847 * 21 20 3 40 40 H 1.09008 * 110.39244 * 82.56300 * 21 20 3 41 41 H 1.08996 * 109.83531 * 117.80173 * 23 22 21 42 42 H 1.09001 * 109.83811 * 238.68844 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.5450 2.1104 -1.2151 5 7 1.9528 1.4218 -2.4422 6 16 1.2844 1.8528 -3.8947 7 8 1.8877 0.9726 -4.8330 8 8 -0.1164 1.8235 -3.6583 9 6 1.8488 3.5555 -4.1652 10 6 1.2900 4.0733 -5.4921 11 6 1.7665 5.5091 -5.7204 12 6 1.2167 6.0189 -7.0277 13 1 0.5897 5.3825 -7.6346 14 6 1.5132 7.2980 -7.4484 15 7 2.2763 8.0730 -6.7089 16 14 0.8311 7.9301 -9.0683 17 1 -0.6530 7.9016 -9.0253 18 1 1.2937 9.3237 -9.2901 19 1 1.3108 7.0674 -10.1777 20 6 3.5617 1.2199 0.0484 21 6 3.8018 1.0682 1.5716 22 8 2.8016 1.8910 2.1928 23 6 1.6841 2.0521 1.3114 24 1 -0.3632 0.4649 -0.9165 25 1 -0.3634 -1.0261 0.0557 26 1 -0.3634 0.5614 0.8608 27 1 0.4593 2.2041 -1.1947 28 1 1.9960 3.1024 -1.1881 29 1 2.6143 0.7133 -2.4039 30 1 1.4962 4.1888 -3.3511 31 1 2.9382 3.5766 -4.1963 32 1 1.6422 3.4401 -6.3064 33 1 0.2007 4.0522 -5.4605 34 1 1.4147 6.1426 -4.9062 35 1 2.8558 5.5297 -5.7522 36 1 2.4852 8.9728 -7.0050 37 1 4.0164 2.1346 -0.3318 38 1 3.9252 0.3479 -0.4954 39 1 4.7989 1.4214 1.8345 40 1 3.6775 0.0283 1.8741 41 1 0.7898 1.6265 1.7665 42 1 1.5256 3.1105 1.1046 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359229928.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:56:56 Heat of formation + Delta-G solvation = -172.626008 kcal Electronic energy + Delta-G solvation = -24052.159999 eV Core-core repulsion = 20352.447078 eV Total energy + Delta-G solvation = -3699.712921 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 307.133 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.62861 -37.48447 -36.94758 -35.83176 -35.15768 -34.71969 -32.22466 -31.68646 -29.81870 -27.85726 -27.09884 -25.66200 -23.77467 -22.89746 -20.92566 -20.66062 -19.24509 -17.99031 -17.57225 -17.01081 -16.54918 -16.01624 -15.90012 -15.69048 -15.39612 -15.29163 -14.81402 -14.54442 -14.46116 -14.16707 -13.61806 -13.36251 -12.75497 -12.62984 -12.36324 -12.28818 -12.08085 -12.00695 -11.90121 -11.83408 -11.79336 -11.59801 -11.28233 -11.04819 -10.92257 -10.90928 -10.48674 -9.99403 -9.97729 -9.91813 -9.80818 -9.37522 -9.13727 -8.43359 -6.08603 -4.11865 0.37985 2.70898 3.22810 3.30167 3.34205 3.37287 3.44220 3.79055 3.95024 4.09982 4.31282 4.39749 4.41188 4.64321 4.80745 4.92480 4.94979 5.05200 5.07574 5.10267 5.12679 5.26133 5.27857 5.29267 5.36760 5.44677 5.48245 5.58393 5.61866 5.82707 6.21365 6.39221 6.54630 6.69640 6.81502 6.84338 7.52757 7.62586 7.89085 8.29380 8.94095 9.52996 11.02576 Molecular weight = 307.13amu Principal moments of inertia in cm(-1) A = 0.022771 B = 0.003009 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.357883 B = 9303.259393 C = 9934.185488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.363 6.363 3 C 0.077 3.923 4 C 0.097 3.903 5 N -1.118 6.118 6 S 2.600 3.400 7 O -0.960 6.960 8 O -0.963 6.963 9 C -0.608 4.608 10 C -0.106 4.106 11 C 0.031 3.969 12 C -0.528 4.528 13 H 0.058 0.942 14 C 0.058 3.942 15 N -0.895 5.895 16 Si 0.895 3.105 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.144 4.144 21 C 0.053 3.947 22 O -0.378 6.378 23 C 0.030 3.970 24 H 0.057 0.943 25 H 0.090 0.910 26 H 0.046 0.954 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.417 0.583 30 H 0.126 0.874 31 H 0.130 0.870 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.020 0.980 35 H 0.021 0.979 36 H 0.262 0.738 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.326 -14.318 17.621 22.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.282 6.282 3 C 0.035 3.965 4 C -0.030 4.030 5 N -0.876 5.876 6 S 2.696 3.304 7 O -0.951 6.951 8 O -0.953 6.953 9 C -0.740 4.740 10 C -0.146 4.146 11 C -0.007 4.007 12 C -0.566 4.566 13 H 0.076 0.924 14 C -0.143 4.143 15 N -0.534 5.534 16 Si 0.723 3.277 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.201 1.201 20 C -0.181 4.181 21 C -0.023 4.023 22 O -0.297 6.297 23 C -0.048 4.048 24 H 0.075 0.925 25 H 0.109 0.891 26 H 0.065 0.935 27 H 0.106 0.894 28 H 0.100 0.900 29 H 0.252 0.748 30 H 0.144 0.856 31 H 0.148 0.852 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.039 0.961 35 H 0.039 0.961 36 H 0.072 0.928 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.107 0.893 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.828 -14.661 17.314 22.702 hybrid contribution 0.091 0.845 -0.800 1.167 sum 0.919 -13.816 16.513 21.550 Atomic orbital electron populations 1.22958 0.80533 1.03423 1.01070 1.87971 1.20298 1.25153 1.94737 1.23202 0.94889 0.84762 0.93640 1.21752 1.01529 0.95717 0.84050 1.55589 1.59869 1.50248 1.21925 1.05336 0.74673 0.77835 0.72524 1.93586 1.78195 1.62664 1.60625 1.93558 1.30447 1.87136 1.84110 1.30548 1.12388 1.21799 1.09312 1.21507 1.00226 1.02409 0.90414 1.19055 0.96807 0.87741 0.97116 1.21215 1.31301 0.98782 1.05337 0.92414 1.25019 0.95082 0.96856 0.97382 1.69947 1.36956 1.08580 1.37935 0.86605 0.79462 0.77835 0.83832 1.20104 1.21227 1.20107 1.23357 0.92028 1.04844 0.97877 1.23396 0.92451 0.95562 0.90873 1.88423 1.28828 1.71262 1.41175 1.23724 0.90728 1.00860 0.89499 0.92460 0.89122 0.93533 0.89354 0.89953 0.74801 0.85565 0.85189 0.91537 0.91549 0.96135 0.96109 0.92814 0.88228 0.88467 0.89312 0.91605 0.90337 0.89740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 10.30 101.05 1.04 1.18 16 2 O -0.36 -3.47 10.37 -35.23 -0.37 -3.84 16 3 C 0.08 0.63 0.54 -88.59 -0.05 0.59 16 4 C 0.10 0.84 4.57 -4.04 -0.02 0.82 16 5 N -1.12 -11.23 5.69 -10.61 -0.06 -11.29 16 6 S 2.60 36.09 5.46 -107.50 -0.59 35.50 16 7 O -0.96 -16.39 18.08 -57.54 -1.04 -17.43 16 8 O -0.96 -15.94 17.50 -57.54 -1.01 -16.95 16 9 C -0.61 -8.81 6.07 37.16 0.23 -8.58 16 10 C -0.11 -2.09 5.16 -26.74 -0.14 -2.23 16 11 C 0.03 0.77 4.97 -27.88 -0.14 0.63 16 12 C -0.53 -14.72 9.11 -34.44 -0.31 -15.03 16 13 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 15 N -0.90 -26.30 13.29 55.43 0.74 -25.57 16 16 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 C -0.14 -1.01 5.73 -24.40 -0.14 -1.15 16 21 C 0.05 0.40 7.78 38.19 0.30 0.70 16 22 O -0.38 -3.73 11.36 -35.23 -0.40 -4.13 16 23 C 0.03 0.24 6.98 37.89 0.26 0.51 16 24 H 0.06 0.54 6.67 -51.93 -0.35 0.19 16 25 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.31 6.30 -51.93 -0.33 -0.01 16 27 H 0.09 0.78 6.27 -51.93 -0.33 0.45 16 28 H 0.08 0.55 8.12 -51.93 -0.42 0.13 16 29 H 0.42 3.69 8.04 -34.47 -0.28 3.41 16 30 H 0.13 1.58 8.14 -51.92 -0.42 1.15 16 31 H 0.13 1.67 8.14 -51.92 -0.42 1.25 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.10 0.60 8.04 -51.93 -0.42 0.18 16 38 H 0.10 0.62 8.04 -51.92 -0.42 0.20 16 39 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 41 H 0.08 0.60 6.16 -51.93 -0.32 0.28 16 42 H 0.08 0.58 7.80 -51.93 -0.40 0.18 16 LS Contribution 354.04 15.07 5.34 5.34 Total: -1.00 -35.58 354.04 -8.08 -43.66 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -6.60 Total: -0.65 kcal Atomic # 6 Polarization: -21.95 SS G_CDS: 0.93 Total: -21.02 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.68 Total: -36.86 kcal Atomic # 8 Polarization: -39.53 SS G_CDS: -2.81 Total: -42.34 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 36.09 SS G_CDS: -0.59 Total: 35.50 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.58 -8.08 -43.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359229928.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.971 kcal (2) G-P(sol) polarization free energy of solvation -35.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds